Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:123079843-123979859

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228 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zdhhc3 9 123066802 to 123113205 46403 - protein coding gene zinc finger, DHHC domain containing 3
Tssr92126 9 123085279 to 123085286 7 - TSS region transcription start site region 92126
Tssr92127 9 123100553 to 123100571 18 - TSS region transcription start site region 92127
Tssr3057 9 123104519 to 123104535 16 - TSS region transcription start site region 3057
Cpgi22547 9 123112491 to 123113717 1226 CpG island CpG island 22547
Tssr87901 9 123112890 to 123112908 18 + TSS region transcription start site region 87901
Tssr87902 9 123112918 to 123112932 14 + TSS region transcription start site region 87902
Tssr92128 9 123113131 to 123113156 25 - TSS region transcription start site region 92128
Tssr92129 9 123113158 to 123113204 46 - TSS region transcription start site region 92129
Tssr92130 9 123113206 to 123113213 7 - TSS region transcription start site region 92130
Tssr87903 9 123113227 to 123113264 37 + TSS region transcription start site region 87903
Exosc7 9 123113231 to 123136129 22898 + protein coding gene exosome component 7
Tssr92131 9 123113312 to 123113329 17 - TSS region transcription start site region 92131
Gm47159 9 123138466 to 123139641 1175 + unclassified gene predicted gene, 47159
Tssr87904 9 123150817 to 123150851 34 + TSS region transcription start site region 87904
Tssr87905 9 123150859 to 123150868 9 + TSS region transcription start site region 87905
Tssr87906 9 123150941 to 123151021 80 + TSS region transcription start site region 87906
Clec3b 9 123150946 to 123157432 6486 + protein coding gene C-type lectin domain family 3, member b
Cpgi22548 9 123156530 to 123157245 715 CpG island CpG island 22548
Gm23323 9 123162371 to 123162503 132 + snoRNA gene predicted gene, 23323
Cdcp1 9 123170824 to 123216038 45214 - protein coding gene CUB domain containing protein 1
D9Mit322 9 123187526 to 123187669 143 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-322
Cpgi22549 9 123215377 to 123216186 809 CpG island CpG island 22549
Tssr92132 9 123215942 to 123216016 74 - TSS region transcription start site region 92132
Tssr92133 9 123216022 to 123216046 24 - TSS region transcription start site region 92133
Tmem158 9 123259053 to 123260764 1711 - protein coding gene transmembrane protein 158
Cpgi22550 9 123259373 to 123261088 1715 CpG island CpG island 22550
Tssr92134 9 123260756 to 123260773 17 - TSS region transcription start site region 92134
Tssr92135 9 123260776 to 123260803 27 - TSS region transcription start site region 92135
Tssr92136 9 123260814 to 123260822 8 - TSS region transcription start site region 92136
Gm47162 9 123307084 to 123307983 899 + lincRNA gene predicted gene, 47162
Scp2-ps2 9 123307508 to 123307986 478 - pseudogene sterol carrier protein 2, pseudogene 2
Tssr92137 9 123307938 to 123307957 19 - TSS region transcription start site region 92137
Tssr92138 9 123307976 to 123307989 13 - TSS region transcription start site region 92138
Cpgi22551 9 123366739 to 123367233 494 CpG island CpG island 22551
Tssr87907 9 123366921 to 123366953 32 + TSS region transcription start site region 87907
Lars2 9 123366927 to 123462666 95739 + protein coding gene leucyl-tRNA synthetase, mitochondrial
Gm46137 9 123381659 to 123390477 8818 + lncRNA gene predicted gene, 46137
Tssr87908 9 123461896 to 123461910 14 + TSS region transcription start site region 87908
Tssr87909 9 123461928 to 123461984 56 + TSS region transcription start site region 87909
Cpgi22552 9 123461958 to 123462186 228 CpG island CpG island 22552
Tssr87910 9 123461993 to 123462000 7 + TSS region transcription start site region 87910
Tssr87911 9 123462075 to 123462090 15 + TSS region transcription start site region 87911
Tssr87912 9 123462096 to 123462103 7 + TSS region transcription start site region 87912
Tssr87913 9 123462140 to 123462166 26 + TSS region transcription start site region 87913
Gm40586 9 123464208 to 123470014 5806 + lncRNA gene predicted gene, 40586
Cpgi22553 9 123478101 to 123479491 1390 CpG island CpG island 22553
Tssr87914 9 123478657 to 123478681 24 + TSS region transcription start site region 87914
Tssr87915 9 123478693 to 123478733 40 + TSS region transcription start site region 87915
Limd1 9 123478706 to 123521552 42846 + protein coding gene LIM domains containing 1
Tssr87916 9 123478738 to 123478782 44 + TSS region transcription start site region 87916
Tssr87917 9 123509167 to 123509178 11 + TSS region transcription start site region 87917
Tssr87918 9 123509180 to 123509205 25 + TSS region transcription start site region 87918
Tssr87919 9 123509222 to 123509236 14 + TSS region transcription start site region 87919
Tssr87920 9 123509260 to 123509287 27 + TSS region transcription start site region 87920
Tssr87921 9 123510049 to 123510069 20 + TSS region transcription start site region 87921
Tssr3058 9 123510485 to 123510516 31 + TSS region transcription start site region 3058
Tssr87922 9 123510524 to 123510536 12 + TSS region transcription start site region 87922
Tssr87923 9 123515503 to 123515517 14 + TSS region transcription start site region 87923
Tssr87924 9 123520590 to 123520611 21 + TSS region transcription start site region 87924
Cpgi22554 9 123528916 to 123530373 1457 CpG island CpG island 22554
n-TRacg2 9 123529425 to 123529497 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon ACG)
Tssr92139 9 123529571 to 123529611 40 - TSS region transcription start site region 92139
Tssr87925 9 123529745 to 123529756 11 + TSS region transcription start site region 87925
Tssr87926 9 123529777 to 123529837 60 + TSS region transcription start site region 87926
Tssr87927 9 123529843 to 123529859 16 + TSS region transcription start site region 87927
Sacm1l 9 123529882 to 123592600 62718 + protein coding gene SAC1 suppressor of actin mutations 1-like (yeast)
Tssr87928 9 123534298 to 123534311 13 + TSS region transcription start site region 87928
Tssr87929 9 123561637 to 123561641 4 + TSS region transcription start site region 87929
Slc6a20b 9 123593820 to 123632565 38745 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 20B
Tssr92140 9 123632360 to 123632370 10 - TSS region transcription start site region 92140
Tssr92141 9 123632384 to 123632387 3 - TSS region transcription start site region 92141
Tssr92142 9 123632457 to 123632462 5 - TSS region transcription start site region 92142
Tssr92143 9 123632469 to 123632491 22 - TSS region transcription start site region 92143
Tssr92144 9 123632493 to 123632525 32 - TSS region transcription start site region 92144
Tssr92145 9 123632528 to 123632543 15 - TSS region transcription start site region 92145
Tssr92146 9 123632545 to 123632548 3 - TSS region transcription start site region 92146
Gm17120 9 123635388 to 123637325 1937 + antisense lncRNA gene predicted gene 17120
Slc6a20a 9 123636907 to 123678832 41925 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 20A
Gm47173 9 123643166 to 123645489 2323 + unclassified gene predicted gene, 47173
Gm47171 9 123644194 to 123646987 2793 - unclassified gene predicted gene, 47171
Tssr92147 9 123650720 to 123650734 14 - TSS region transcription start site region 92147
Gm17200 9 123678096 to 123701046 22950 + lincRNA gene predicted gene 17200
Cpgi22555 9 123678263 to 123679317 1054 CpG island CpG island 22555
Tssr92148 9 123678813 to 123678850 37 - TSS region transcription start site region 92148
Tssr92149 9 123678852 to 123678863 11 - TSS region transcription start site region 92149
Tssr92150 9 123678873 to 123678878 5 - TSS region transcription start site region 92150
Gm10052 9 123689233 to 123690192 959 - pseudogene predicted pseudogene 10052
Lztfl1 9 123694413 to 123717668 23255 - protein coding gene leucine zipper transcription factor-like 1
Tssr92151 9 123710587 to 123710622 35 - TSS region transcription start site region 92151
Cpgi22556 9 123717285 to 123718011 726 CpG island CpG island 22556
Tssr92152 9 123717540 to 123717574 34 - TSS region transcription start site region 92152
Tssr92153 9 123717576 to 123717632 56 - TSS region transcription start site region 92153
Tssr87930 9 123757043 to 123757049 6 + TSS region transcription start site region 87930
Tssr92154 9 123760218 to 123760227 9 - TSS region transcription start site region 92154
Tssr87931 9 123761439 to 123761447 8 + TSS region transcription start site region 87931
Gm17020 9 123762503 to 123762776 273 + pseudogene predicted gene 17020
Tssr87932 9 123766961 to 123766971 10 + TSS region transcription start site region 87932
Ccr9 9 123767211 to 123783457 16246 + protein coding gene chemokine (C-C motif) receptor 9
Tssr87933 9 123767217 to 123767241 24 + TSS region transcription start site region 87933
Gm17021 9 123767508 to 123772910 5402 - sense overlapping lncRNA gene predicted gene 17021
Tssr87934 9 123769172 to 123769183 11 + TSS region transcription start site region 87934
Tssr87935 9 123769196 to 123769215 19 + TSS region transcription start site region 87935
Tssr92155 9 123769505 to 123769514 9 - TSS region transcription start site region 92155
Tssr87936 9 123769880 to 123769890 10 + TSS region transcription start site region 87936
Tssr87937 9 123769898 to 123769908 10 + TSS region transcription start site region 87937
Tssr87938 9 123773312 to 123773344 32 + TSS region transcription start site region 87938
Tssr87939 9 123773519 to 123773530 11 + TSS region transcription start site region 87939
Tssr87940 9 123774596 to 123774601 5 + TSS region transcription start site region 87940
Tssr87941 9 123774750 to 123774761 11 + TSS region transcription start site region 87941
Tssr87942 9 123774800 to 123774810 10 + TSS region transcription start site region 87942
Tssr87943 9 123774852 to 123774869 17 + TSS region transcription start site region 87943
Tssr87944 9 123774962 to 123774973 11 + TSS region transcription start site region 87944
Tssr87945 9 123775014 to 123775025 11 + TSS region transcription start site region 87945
Tssr87946 9 123775030 to 123775041 11 + TSS region transcription start site region 87946
Tssr87947 9 123775056 to 123775069 13 + TSS region transcription start site region 87947
Tssr87948 9 123776503 to 123776511 8 + TSS region transcription start site region 87948
Tssr87949 9 123780347 to 123780355 8 + TSS region transcription start site region 87949
Tssr87950 9 123781186 to 123781198 12 + TSS region transcription start site region 87950
Tssr87951 9 123781202 to 123781249 47 + TSS region transcription start site region 87951
Tssr87952 9 123781255 to 123781306 51 + TSS region transcription start site region 87952
Tssr87953 9 123781403 to 123781420 17 + TSS region transcription start site region 87953
Tssr87954 9 123781428 to 123781440 12 + TSS region transcription start site region 87954
Tssr87955 9 123781456 to 123781472 16 + TSS region transcription start site region 87955
Tssr92156 9 123781495 to 123781504 9 - TSS region transcription start site region 92156
Tssr87956 9 123781600 to 123781621 21 + TSS region transcription start site region 87956
Tssr87957 9 123782030 to 123782037 7 + TSS region transcription start site region 87957
Fyco1 9 123789500 to 123851899 62399 - protein coding gene FYVE and coiled-coil domain containing 1
Tssr92157 9 123792054 to 123792066 12 - TSS region transcription start site region 92157
Tssr92158 9 123792069 to 123792072 3 - TSS region transcription start site region 92158
Tssr92159 9 123792077 to 123792096 19 - TSS region transcription start site region 92159
Tssr92160 9 123792470 to 123792471 1 - TSS region transcription start site region 92160
Tssr92161 9 123792487 to 123792492 5 - TSS region transcription start site region 92161
Tssr92162 9 123794825 to 123794843 18 - TSS region transcription start site region 92162
Tssr92163 9 123797586 to 123797603 17 - TSS region transcription start site region 92163
Tssr92164 9 123797959 to 123797974 15 - TSS region transcription start site region 92164
Tssr92165 9 123797979 to 123797990 11 - TSS region transcription start site region 92165
Tssr92166 9 123798122 to 123798130 8 - TSS region transcription start site region 92166
Tssr87958 9 123805536 to 123805544 8 + TSS region transcription start site region 87958
Tssr87959 9 123806468 to 123806485 17 + TSS region transcription start site region 87959
Cxcr6 9 123806477 to 123811754 5277 + protein coding gene chemokine (C-X-C motif) receptor 6
Tssr87960 9 123806491 to 123806504 13 + TSS region transcription start site region 87960
Tssr92167 9 123807746 to 123807761 15 - TSS region transcription start site region 92167
Tssr92168 9 123809042 to 123809056 14 - TSS region transcription start site region 92168
Tssr87961 9 123834363 to 123834392 29 + TSS region transcription start site region 87961
Tssr92169 9 123835977 to 123835995 18 - TSS region transcription start site region 92169
Tssr92170 9 123839836 to 123839841 5 - TSS region transcription start site region 92170
Tssr87962 9 123840641 to 123840661 20 + TSS region transcription start site region 87962
Tssr92171 9 123844573 to 123844584 11 - TSS region transcription start site region 92171
Tssr92172 9 123844588 to 123844620 32 - TSS region transcription start site region 92172
Tssr92173 9 123845188 to 123845200 12 - TSS region transcription start site region 92173
Tssr87963 9 123845437 to 123845450 13 + TSS region transcription start site region 87963
Tssr87964 9 123845454 to 123845463 9 + TSS region transcription start site region 87964
Tssr87965 9 123850286 to 123850302 16 + TSS region transcription start site region 87965
Tssr87966 9 123850321 to 123850333 12 + TSS region transcription start site region 87966
Tssr87967 9 123851038 to 123851073 35 + TSS region transcription start site region 87967
Tssr87968 9 123851248 to 123851283 35 + TSS region transcription start site region 87968
Tssr87969 9 123851284 to 123851314 30 + TSS region transcription start site region 87969
Tssr87970 9 123851324 to 123851335 11 + TSS region transcription start site region 87970
Cpgi22557 9 123851345 to 123852242 897 CpG island CpG island 22557
Tssr87971 9 123851383 to 123851431 48 + TSS region transcription start site region 87971
Tssr92174 9 123851804 to 123851815 11 - TSS region transcription start site region 92174
Tssr92175 9 123851855 to 123851912 57 - TSS region transcription start site region 92175
Tssr87972 9 123852142 to 123852208 66 + TSS region transcription start site region 87972
Xcr1 9 123852315 to 123862029 9714 - protein coding gene chemokine (C motif) receptor 1
Tssr87973 9 123853360 to 123853366 6 + TSS region transcription start site region 87973
Tssr92176 9 123862013 to 123862020 7 - TSS region transcription start site region 92176
Tssr92177 9 123862023 to 123862035 12 - TSS region transcription start site region 92177
Gm2774 9 123867808 to 123868953 1145 - pseudogene predicted gene 2774
Tssr92178 9 123872109 to 123872157 48 - TSS region transcription start site region 92178
Tssr87974 9 123872294 to 123872332 38 + TSS region transcription start site region 87974
Tssr92179 9 123872964 to 123872969 5 - TSS region transcription start site region 92179
Tssr3059 9 123923249 to 123923290 41 - TSS region transcription start site region 3059
Tssr3060 9 123924332 to 123924342 10 - TSS region transcription start site region 3060
Tssr3061 9 123924672 to 123924687 15 - TSS region transcription start site region 3061
Tssr3062 9 123924762 to 123924779 17 - TSS region transcription start site region 3062
Tssr3063 9 123924826 to 123924847 21 - TSS region transcription start site region 3063
Tssr3064 9 123924975 to 123925017 42 + TSS region transcription start site region 3064
Tssr3065 9 123927355 to 123927380 25 - TSS region transcription start site region 3065
Tssr3066 9 123927480 to 123927514 34 + TSS region transcription start site region 3066
Tssr3067 9 123927537 to 123927548 11 + TSS region transcription start site region 3067
Tssr3068 9 123927877 to 123927887 10 - TSS region transcription start site region 3068
Tssr3069 9 123927945 to 123927957 12 - TSS region transcription start site region 3069
Tssr3070 9 123928184 to 123928207 23 + TSS region transcription start site region 3070
Tssr3071 9 123928219 to 123928260 41 + TSS region transcription start site region 3071
Tssr3072 9 123928290 to 123928308 18 + TSS region transcription start site region 3072
Tssr3073 9 123928311 to 123928371 60 + TSS region transcription start site region 3073
Tssr3074 9 123928796 to 123928840 44 - TSS region transcription start site region 3074
Tssr3075 9 123928873 to 123928881 8 - TSS region transcription start site region 3075
Tssr3076 9 123928929 to 123928939 10 + TSS region transcription start site region 3076
Tssr3077 9 123929159 to 123929182 23 + TSS region transcription start site region 3077
Tssr3078 9 123929190 to 123929205 15 - TSS region transcription start site region 3078
Tssr3079 9 123931107 to 123931135 28 - TSS region transcription start site region 3079
Tssr92180 9 123931684 to 123931712 28 - TSS region transcription start site region 92180
Tssr87975 9 123931746 to 123931770 24 + TSS region transcription start site region 87975
Tssr3080 9 123931875 to 123931904 29 + TSS region transcription start site region 3080
Tssr87976 9 123933918 to 123933931 13 + TSS region transcription start site region 87976
Tssr87977 9 123935721 to 123935724 3 + TSS region transcription start site region 87977
Tssr3081 9 123936721 to 123936726 5 - TSS region transcription start site region 3081
Tssr87978 9 123936900 to 123936908 8 + TSS region transcription start site region 87978