Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:123055814-123465822

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tgm4 9 123034741 to 123067558 32817 + protein coding gene transglutaminase 4 (prostate)
Tssr87887 9 123056430 to 123056436 6 + TSS region transcription start site region 87887
Tssr87888 9 123056444 to 123056453 9 + TSS region transcription start site region 87888
Tssr87889 9 123056563 to 123056574 11 + TSS region transcription start site region 87889
Tssr87890 9 123056591 to 123056593 2 + TSS region transcription start site region 87890
Tssr87891 9 123056642 to 123056653 11 + TSS region transcription start site region 87891
Tssr92119 9 123056670 to 123056677 7 - TSS region transcription start site region 92119
Tssr87892 9 123060567 to 123060571 4 + TSS region transcription start site region 87892
Tssr87893 9 123061640 to 123061641 1 + TSS region transcription start site region 87893
Tssr87894 9 123061738 to 123061748 10 + TSS region transcription start site region 87894
Tssr92120 9 123061772 to 123061779 7 - TSS region transcription start site region 92120
Tssr92121 9 123061786 to 123061789 3 - TSS region transcription start site region 92121
Tssr92122 9 123061795 to 123061802 7 - TSS region transcription start site region 92122
Tssr87895 9 123061805 to 123061810 5 + TSS region transcription start site region 87895
Tssr92123 9 123061815 to 123061822 7 - TSS region transcription start site region 92123
Tssr92124 9 123061846 to 123061877 31 - TSS region transcription start site region 92124
Tssr87896 9 123062390 to 123062405 15 + TSS region transcription start site region 87896
Zdhhc3 9 123066802 to 123113205 46403 - protein coding gene zinc finger, DHHC domain containing 3
Tssr87897 9 123067118 to 123067124 6 + TSS region transcription start site region 87897
Tssr87898 9 123067192 to 123067198 6 + TSS region transcription start site region 87898
Tssr87899 9 123067409 to 123067419 10 + TSS region transcription start site region 87899
Tssr87900 9 123067473 to 123067525 52 + TSS region transcription start site region 87900
Tssr92125 9 123071313 to 123071316 3 - TSS region transcription start site region 92125
Tssr92126 9 123085279 to 123085286 7 - TSS region transcription start site region 92126
Tssr92127 9 123100553 to 123100571 18 - TSS region transcription start site region 92127
Tssr3057 9 123104519 to 123104535 16 - TSS region transcription start site region 3057
Cpgi22547 9 123112491 to 123113717 1226 CpG island CpG island 22547
Tssr87901 9 123112890 to 123112908 18 + TSS region transcription start site region 87901
Tssr87902 9 123112918 to 123112932 14 + TSS region transcription start site region 87902
Tssr92128 9 123113131 to 123113156 25 - TSS region transcription start site region 92128
Tssr92129 9 123113158 to 123113204 46 - TSS region transcription start site region 92129
Tssr92130 9 123113206 to 123113213 7 - TSS region transcription start site region 92130
Tssr87903 9 123113227 to 123113264 37 + TSS region transcription start site region 87903
Exosc7 9 123113231 to 123136129 22898 + protein coding gene exosome component 7
Tssr92131 9 123113312 to 123113329 17 - TSS region transcription start site region 92131
Gm47159 9 123138466 to 123139641 1175 + unclassified gene predicted gene, 47159
Tssr87904 9 123150817 to 123150851 34 + TSS region transcription start site region 87904
Tssr87905 9 123150859 to 123150868 9 + TSS region transcription start site region 87905
Tssr87906 9 123150941 to 123151021 80 + TSS region transcription start site region 87906
Clec3b 9 123150946 to 123157432 6486 + protein coding gene C-type lectin domain family 3, member b
Cpgi22548 9 123156530 to 123157245 715 CpG island CpG island 22548
Gm23323 9 123162371 to 123162503 132 + snoRNA gene predicted gene, 23323
Cdcp1 9 123170824 to 123216038 45214 - protein coding gene CUB domain containing protein 1
D9Mit322 9 123187526 to 123187669 143 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-322
Cpgi22549 9 123215377 to 123216186 809 CpG island CpG island 22549
Tssr92132 9 123215942 to 123216016 74 - TSS region transcription start site region 92132
Tssr92133 9 123216022 to 123216046 24 - TSS region transcription start site region 92133
Tmem158 9 123259053 to 123260764 1711 - protein coding gene transmembrane protein 158
Cpgi22550 9 123259373 to 123261088 1715 CpG island CpG island 22550
Tssr92134 9 123260756 to 123260773 17 - TSS region transcription start site region 92134
Tssr92135 9 123260776 to 123260803 27 - TSS region transcription start site region 92135
Tssr92136 9 123260814 to 123260822 8 - TSS region transcription start site region 92136
Gm47162 9 123307084 to 123307983 899 + lincRNA gene predicted gene, 47162
Scp2-ps2 9 123307508 to 123307986 478 - pseudogene sterol carrier protein 2, pseudogene 2
Tssr92137 9 123307938 to 123307957 19 - TSS region transcription start site region 92137
Tssr92138 9 123307976 to 123307989 13 - TSS region transcription start site region 92138
Cpgi22551 9 123366739 to 123367233 494 CpG island CpG island 22551
Tssr87907 9 123366921 to 123366953 32 + TSS region transcription start site region 87907
Lars2 9 123366927 to 123462666 95739 + protein coding gene leucyl-tRNA synthetase, mitochondrial
Gm46137 9 123381659 to 123390477 8818 + lncRNA gene predicted gene, 46137
Tssr87908 9 123461896 to 123461910 14 + TSS region transcription start site region 87908
Tssr87909 9 123461928 to 123461984 56 + TSS region transcription start site region 87909
Cpgi22552 9 123461958 to 123462186 228 CpG island CpG island 22552
Tssr87910 9 123461993 to 123462000 7 + TSS region transcription start site region 87910
Tssr87911 9 123462075 to 123462090 15 + TSS region transcription start site region 87911
Tssr87912 9 123462096 to 123462103 7 + TSS region transcription start site region 87912
Tssr87913 9 123462140 to 123462166 26 + TSS region transcription start site region 87913
Gm40586 9 123464208 to 123470014 5806 + lncRNA gene predicted gene, 40586