Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:122674395-123044401

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr87849 9 122681893 to 122681896 3 + TSS region transcription start site region 87849
Tssr87850 9 122682122 to 122682133 11 + TSS region transcription start site region 87850
Tssr87851 9 122682172 to 122682184 12 + TSS region transcription start site region 87851
Gm47135 9 122682742 to 122683641 899 + pseudogene predicted gene, 47135
Mir138-1 9 122682876 to 122682974 98 + miRNA gene microRNA 138-1
Tssr87852 9 122682958 to 122682960 2 + TSS region transcription start site region 87852
Tssr87853 9 122686765 to 122686769 4 + TSS region transcription start site region 87853
Tssr87854 9 122686795 to 122686802 7 + TSS region transcription start site region 87854
Gm35501 9 122686799 to 122693642 6843 + lincRNA gene predicted gene, 35501
Gm47136 9 122687068 to 122714333 27265 - lincRNA gene predicted gene, 47136
D9Mit52 9 122702676 to 122702847 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 52
Gm47137 9 122715203 to 122715364 161 + pseudogene predicted gene, 47137
Tssr87855 9 122739278 to 122739284 6 + TSS region transcription start site region 87855
Cpgi22538 9 122747070 to 122747580 510 CpG island CpG island 22538
Tssr87856 9 122747193 to 122747223 30 + TSS region transcription start site region 87856
Tssr87857 9 122747224 to 122747241 17 + TSS region transcription start site region 87857
Tssr87858 9 122747261 to 122747264 3 + TSS region transcription start site region 87858
Topaz1 9 122747346 to 122802074 54728 + protein coding gene testis and ovary specific PAZ domain containing 1
Cpgi22539 9 122805385 to 122806055 670 CpG island CpG island 22539
Tssr92101 9 122805421 to 122805432 11 - TSS region transcription start site region 92101
Tssr92102 9 122805439 to 122805456 17 - TSS region transcription start site region 92102
Tssr92103 9 122805459 to 122805475 16 - TSS region transcription start site region 92103
Tssr87859 9 122805524 to 122805580 56 + TSS region transcription start site region 87859
Tcaim 9 122805539 to 122836334 30795 + protein coding gene T cell activation inhibitor, mitochondrial
Tssr87860 9 122805591 to 122805625 34 + TSS region transcription start site region 87860
Tssr87861 9 122805626 to 122805668 42 + TSS region transcription start site region 87861
Gm25341 9 122812564 to 122812831 267 + unclassified non-coding RNA gene predicted gene, 25341
Cpgi22540 9 122837921 to 122838119 198 CpG island CpG island 22540
Gm35549 9 122838164 to 122845227 7063 - protein coding gene predicted gene, 35549
Tssr92104 9 122843976 to 122843985 9 - TSS region transcription start site region 92104
Tssr92105 9 122843994 to 122844001 7 - TSS region transcription start site region 92105
Tssr92106 9 122844014 to 122844027 13 - TSS region transcription start site region 92106
Zfp445 9 122844529 to 122866006 21477 - protein coding gene zinc finger protein 445
Gm47140 9 122847019 to 122848418 1399 - sense intronic lncRNA gene predicted gene, 47140
Tssr92107 9 122859395 to 122859401 6 - TSS region transcription start site region 92107
Cpgi22541 9 122865678 to 122866172 494 CpG island CpG island 22541
Tssr92108 9 122865915 to 122865926 11 - TSS region transcription start site region 92108
Tssr92109 9 122865938 to 122865999 61 - TSS region transcription start site region 92109
Tssr92110 9 122866008 to 122866015 7 - TSS region transcription start site region 92110
Tssr87862 9 122873924 to 122873930 6 + TSS region transcription start site region 87862
Tssr87863 9 122875514 to 122875521 7 + TSS region transcription start site region 87863
A530083I20Rik 9 122885080 to 122903531 18451 - lincRNA gene RIKEN cDNA A530083I20 gene
Cpgi22542 9 122886697 to 122887310 613 CpG island CpG island 22542
Tssr87864 9 122886802 to 122886859 57 + TSS region transcription start site region 87864
Zkscan7 9 122886979 to 122914158 27179 + protein coding gene zinc finger with KRAB and SCAN domains 7
Tssr92111 9 122903102 to 122903162 60 - TSS region transcription start site region 92111
Cpgi22543 9 122903157 to 122903608 451 CpG island CpG island 22543
Tssr87865 9 122903238 to 122903263 25 + TSS region transcription start site region 87865
Tssr87866 9 122903293 to 122903308 15 + TSS region transcription start site region 87866
Gm47145 9 122918533 to 122921342 2809 + pseudogene predicted gene, 47145
Cpgi22544 9 122922855 to 122923358 503 CpG island CpG island 22544
Tssr87867 9 122923050 to 122923092 42 + TSS region transcription start site region 87867
Zfp105 9 122923072 to 122931028 7956 + protein coding gene zinc finger protein 105
Tssr87868 9 122923103 to 122923110 7 + TSS region transcription start site region 87868
Gm46136 9 122935812 to 122942819 7007 + lincRNA gene predicted gene, 46136
Gm47146 9 122942530 to 122942691 161 + pseudogene predicted gene, 47146
1110059G10Rik 9 122945089 to 122951000 5911 - protein coding gene RIKEN cDNA 1110059G10 gene
Cpgi22545 9 122950605 to 122951513 908 CpG island CpG island 22545
Tssr92112 9 122950908 to 122950915 7 - TSS region transcription start site region 92112
Tssr92113 9 122950922 to 122950953 31 - TSS region transcription start site region 92113
Tssr92114 9 122950960 to 122951006 46 - TSS region transcription start site region 92114
Kif15 9 122951046 to 123018733 67687 + protein coding gene kinesin family member 15
Tssr87869 9 122951051 to 122951106 55 + TSS region transcription start site region 87869
Gm35691 9 122959997 to 122960412 415 - pseudogene predicted gene, 35691
Tssr87870 9 122981542 to 122981557 15 + TSS region transcription start site region 87870
Gm47148 9 122993127 to 122993704 577 + unclassified gene predicted gene, 47148
Tssr87871 9 122999176 to 122999181 5 + TSS region transcription start site region 87871
Tssr87872 9 122999194 to 122999221 27 + TSS region transcription start site region 87872
Tssr87873 9 122999450 to 122999456 6 + TSS region transcription start site region 87873
Tssr87874 9 122999465 to 122999487 22 + TSS region transcription start site region 87874
Gm9856 9 123018995 to 123021572 2577 - antisense lncRNA gene predicted gene 9856
Cpgi22546 9 123020811 to 123021955 1144 CpG island CpG island 22546
Tssr87875 9 123021119 to 123021132 13 + TSS region transcription start site region 87875
Tssr92115 9 123021214 to 123021218 4 - TSS region transcription start site region 92115
Tssr87876 9 123021315 to 123021374 59 + TSS region transcription start site region 87876
Tmem42 9 123021326 to 123023705 2379 + protein coding gene transmembrane protein 42
Tssr92116 9 123021415 to 123021463 48 - TSS region transcription start site region 92116
Gm49323 9 123021418 to 123045019 23601 + unclassified non-coding RNA gene predicted gene, 49323
Tssr92117 9 123021522 to 123021606 84 - TSS region transcription start site region 92117
Tssr87877 9 123034660 to 123034682 22 + TSS region transcription start site region 87877
Tssr87878 9 123034722 to 123034728 6 + TSS region transcription start site region 87878
Tssr87879 9 123034731 to 123034752 21 + TSS region transcription start site region 87879
Tgm4 9 123034741 to 123067558 32817 + protein coding gene transglutaminase 4 (prostate)
Tssr87880 9 123040463 to 123040468 5 + TSS region transcription start site region 87880
Tssr3056 9 123043057 to 123043087 30 + TSS region transcription start site region 3056