MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 9:122652676-122752847

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr87849	9	122681893 to 122681896	3	+	TSS region	transcription start site region 87849
Tssr87850	9	122682122 to 122682133	11	+	TSS region	transcription start site region 87850
Tssr87851	9	122682172 to 122682184	12	+	TSS region	transcription start site region 87851
Gm47135	9	122682742 to 122683641	899	+	pseudogene	predicted gene, 47135
Mir138-1	9	122682876 to 122682974	98	+	miRNA gene	microRNA 138-1
Tssr87852	9	122682958 to 122682960	2	+	TSS region	transcription start site region 87852
Tssr87853	9	122686765 to 122686769	4	+	TSS region	transcription start site region 87853
Tssr87854	9	122686795 to 122686802	7	+	TSS region	transcription start site region 87854
Gm35501	9	122686799 to 122693642	6843	+	lincRNA gene	predicted gene, 35501
Gm47136	9	122687068 to 122714333	27265	-	lincRNA gene	predicted gene, 47136
D9Mit52	9	122702676 to 122702847	171		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 52
Gm47137	9	122715203 to 122715364	161	+	pseudogene	predicted gene, 47137
Tssr87855	9	122739278 to 122739284	6	+	TSS region	transcription start site region 87855
Cpgi22538	9	122747070 to 122747580	510		CpG island	CpG island 22538
Tssr87856	9	122747193 to 122747223	30	+	TSS region	transcription start site region 87856
Tssr87857	9	122747224 to 122747241	17	+	TSS region	transcription start site region 87857
Tssr87858	9	122747261 to 122747264	3	+	TSS region	transcription start site region 87858
Topaz1	9	122747346 to 122802074	54728	+	protein coding gene	testis and ovary specific PAZ domain containing 1