Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:122567958-122797960

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22535 9 122568588 to 122570487 1899 CpG island CpG island 22535
Tssr87846 9 122569088 to 122569090 2 + TSS region transcription start site region 87846
Cpgi22536 9 122571194 to 122572941 1747 CpG island CpG island 22536
Tssr87847 9 122572493 to 122572511 18 + TSS region transcription start site region 87847
9530059O14Rik 9 122572501 to 122580647 8146 + lincRNA gene RIKEN cDNA 9530059O14 gene
Cpgi22537 9 122595242 to 122595680 438 CpG island CpG island 22537
Tssr87848 9 122601155 to 122601163 8 + TSS region transcription start site region 87848
Gm47134 9 122640169 to 122647830 7661 - lincRNA gene predicted gene, 47134
Tssr87849 9 122681893 to 122681896 3 + TSS region transcription start site region 87849
Tssr87850 9 122682122 to 122682133 11 + TSS region transcription start site region 87850
Tssr87851 9 122682172 to 122682184 12 + TSS region transcription start site region 87851
Gm47135 9 122682742 to 122683641 899 + pseudogene predicted gene, 47135
Mir138-1 9 122682876 to 122682974 98 + miRNA gene microRNA 138-1
Tssr87852 9 122682958 to 122682960 2 + TSS region transcription start site region 87852
Tssr87853 9 122686765 to 122686769 4 + TSS region transcription start site region 87853
Tssr87854 9 122686795 to 122686802 7 + TSS region transcription start site region 87854
Gm35501 9 122686799 to 122693642 6843 + lincRNA gene predicted gene, 35501
Gm47136 9 122687068 to 122714333 27265 - lincRNA gene predicted gene, 47136
D9Mit52 9 122702676 to 122702847 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 52
Gm47137 9 122715203 to 122715364 161 + pseudogene predicted gene, 47137
Tssr87855 9 122739278 to 122739284 6 + TSS region transcription start site region 87855
Cpgi22538 9 122747070 to 122747580 510 CpG island CpG island 22538
Tssr87856 9 122747193 to 122747223 30 + TSS region transcription start site region 87856
Tssr87857 9 122747224 to 122747241 17 + TSS region transcription start site region 87857
Tssr87858 9 122747261 to 122747264 3 + TSS region transcription start site region 87858
Topaz1 9 122747346 to 122802074 54728 + protein coding gene testis and ovary specific PAZ domain containing 1