Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:122321194-122822941

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35398 9 122343030 to 122345595 2565 - lncRNA gene predicted gene, 35398
Tssr92096 9 122349228 to 122349255 27 - TSS region transcription start site region 92096
Tssr87837 9 122349570 to 122349603 33 + TSS region transcription start site region 87837
Cpgi22534 9 122351114 to 122352420 1306 CpG island CpG island 22534
Tssr92097 9 122351397 to 122351444 47 - TSS region transcription start site region 92097
Tssr92098 9 122351484 to 122351502 18 - TSS region transcription start site region 92098
Tssr92099 9 122351516 to 122351532 16 - TSS region transcription start site region 92099
Tssr87838 9 122351555 to 122351565 10 + TSS region transcription start site region 87838
Tssr92100 9 122351600 to 122351610 10 - TSS region transcription start site region 92100
Abhd5 9 122351608 to 122381524 29916 + protein coding gene abhydrolase domain containing 5
Tssr87839 9 122351723 to 122351738 15 + TSS region transcription start site region 87839
Tssr87840 9 122351763 to 122351771 8 + TSS region transcription start site region 87840
Tssr87841 9 122351775 to 122351784 9 + TSS region transcription start site region 87841
Tssr87842 9 122351894 to 122351939 45 + TSS region transcription start site region 87842
Tssr87843 9 122358895 to 122358898 3 + TSS region transcription start site region 87843
A730085K08Rik 9 122382022 to 122398801 16779 - antisense lncRNA gene RIKEN cDNA A730085K08 gene
Gm46135 9 122382834 to 122384798 1964 + lncRNA gene predicted gene, 46135
Tssr87844 9 122421302 to 122421307 5 + TSS region transcription start site region 87844
Tssr87845 9 122422120 to 122422128 8 + TSS region transcription start site region 87845
Gm47128 9 122422136 to 122423376 1240 + lincRNA gene predicted gene, 47128
Gm35454 9 122435882 to 122438117 2235 - lincRNA gene predicted gene, 35454
Tssr3055 9 122438111 to 122438136 25 - TSS region transcription start site region 3055
Gm47129 9 122478750 to 122479262 512 + pseudogene predicted gene, 47129
Gm47130 9 122511271 to 122511611 340 - pseudogene predicted gene, 47130
D9Mit351.2 9 122511290 to 122511418 128 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 351.2
D9Mit351 9 122511457 to 122511566 109 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 351
Gm47131 9 122512549 to 122513598 1049 - lincRNA gene predicted gene, 47131
Gm47133 9 122531746 to 122535020 3274 - lincRNA gene predicted gene, 47133
Cpgi22535 9 122568588 to 122570487 1899 CpG island CpG island 22535
Tssr87846 9 122569088 to 122569090 2 + TSS region transcription start site region 87846
Cpgi22536 9 122571194 to 122572941 1747 CpG island CpG island 22536
Tssr87847 9 122572493 to 122572511 18 + TSS region transcription start site region 87847
9530059O14Rik 9 122572501 to 122580647 8146 + lincRNA gene RIKEN cDNA 9530059O14 gene
Cpgi22537 9 122595242 to 122595680 438 CpG island CpG island 22537
Tssr87848 9 122601155 to 122601163 8 + TSS region transcription start site region 87848
Gm47134 9 122640169 to 122647830 7661 - lincRNA gene predicted gene, 47134
Tssr87849 9 122681893 to 122681896 3 + TSS region transcription start site region 87849
Tssr87850 9 122682122 to 122682133 11 + TSS region transcription start site region 87850
Tssr87851 9 122682172 to 122682184 12 + TSS region transcription start site region 87851
Gm47135 9 122682742 to 122683641 899 + pseudogene predicted gene, 47135
Mir138-1 9 122682876 to 122682974 98 + miRNA gene microRNA 138-1
Tssr87852 9 122682958 to 122682960 2 + TSS region transcription start site region 87852
Tssr87853 9 122686765 to 122686769 4 + TSS region transcription start site region 87853
Tssr87854 9 122686795 to 122686802 7 + TSS region transcription start site region 87854
Gm35501 9 122686799 to 122693642 6843 + lincRNA gene predicted gene, 35501
Gm47136 9 122687068 to 122714333 27265 - lincRNA gene predicted gene, 47136
D9Mit52 9 122702676 to 122702847 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 52
Gm47137 9 122715203 to 122715364 161 + pseudogene predicted gene, 47137
Tssr87855 9 122739278 to 122739284 6 + TSS region transcription start site region 87855
Cpgi22538 9 122747070 to 122747580 510 CpG island CpG island 22538
Tssr87856 9 122747193 to 122747223 30 + TSS region transcription start site region 87856
Tssr87857 9 122747224 to 122747241 17 + TSS region transcription start site region 87857
Tssr87858 9 122747261 to 122747264 3 + TSS region transcription start site region 87858
Topaz1 9 122747346 to 122802074 54728 + protein coding gene testis and ovary specific PAZ domain containing 1
Cpgi22539 9 122805385 to 122806055 670 CpG island CpG island 22539
Tssr92101 9 122805421 to 122805432 11 - TSS region transcription start site region 92101
Tssr92102 9 122805439 to 122805456 17 - TSS region transcription start site region 92102
Tssr92103 9 122805459 to 122805475 16 - TSS region transcription start site region 92103
Tssr87859 9 122805524 to 122805580 56 + TSS region transcription start site region 87859
Tcaim 9 122805539 to 122836334 30795 + protein coding gene T cell activation inhibitor, mitochondrial
Tssr87860 9 122805591 to 122805625 34 + TSS region transcription start site region 87860
Tssr87861 9 122805626 to 122805668 42 + TSS region transcription start site region 87861
Gm25341 9 122812564 to 122812831 267 + unclassified non-coding RNA gene predicted gene, 25341