Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:122302945-125552957

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452 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47126 9 122295911 to 122304879 8968 + bidirectional promoter lncRNA gene predicted gene, 47126
Tssr92092 9 122305413 to 122305426 13 - TSS region transcription start site region 92092
Gm26797 9 122307403 to 122311026 3623 - lincRNA gene predicted gene, 26797
Cpgi22533 9 122310803 to 122310979 176 CpG island CpG island 22533
Tssr92093 9 122310896 to 122310910 14 - TSS region transcription start site region 92093
Tssr92094 9 122310921 to 122310936 15 - TSS region transcription start site region 92094
Tssr92095 9 122310945 to 122310955 10 - TSS region transcription start site region 92095
Gm35289 9 122316820 to 122320008 3188 + lncRNA gene predicted gene, 35289
Gm35398 9 122343030 to 122345595 2565 - lncRNA gene predicted gene, 35398
Tssr92096 9 122349228 to 122349255 27 - TSS region transcription start site region 92096
Tssr87837 9 122349570 to 122349603 33 + TSS region transcription start site region 87837
Cpgi22534 9 122351114 to 122352420 1306 CpG island CpG island 22534
Tssr92097 9 122351397 to 122351444 47 - TSS region transcription start site region 92097
Tssr92098 9 122351484 to 122351502 18 - TSS region transcription start site region 92098
Tssr92099 9 122351516 to 122351532 16 - TSS region transcription start site region 92099
Tssr87838 9 122351555 to 122351565 10 + TSS region transcription start site region 87838
Tssr92100 9 122351600 to 122351610 10 - TSS region transcription start site region 92100
Abhd5 9 122351608 to 122381524 29916 + protein coding gene abhydrolase domain containing 5
Tssr87839 9 122351723 to 122351738 15 + TSS region transcription start site region 87839
Tssr87840 9 122351763 to 122351771 8 + TSS region transcription start site region 87840
Tssr87841 9 122351775 to 122351784 9 + TSS region transcription start site region 87841
Tssr87842 9 122351894 to 122351939 45 + TSS region transcription start site region 87842
Tssr87843 9 122358895 to 122358898 3 + TSS region transcription start site region 87843
A730085K08Rik 9 122382022 to 122398801 16779 - antisense lncRNA gene RIKEN cDNA A730085K08 gene
Gm46135 9 122382834 to 122384798 1964 + lncRNA gene predicted gene, 46135
Tssr87844 9 122421302 to 122421307 5 + TSS region transcription start site region 87844
Tssr87845 9 122422120 to 122422128 8 + TSS region transcription start site region 87845
Gm47128 9 122422136 to 122423376 1240 + lincRNA gene predicted gene, 47128
Gm35454 9 122435882 to 122438117 2235 - lincRNA gene predicted gene, 35454
Tssr3055 9 122438111 to 122438136 25 - TSS region transcription start site region 3055
Gm47129 9 122478750 to 122479262 512 + pseudogene predicted gene, 47129
Gm47130 9 122511271 to 122511611 340 - pseudogene predicted gene, 47130
D9Mit351.2 9 122511290 to 122511418 128 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 351.2
D9Mit351 9 122511457 to 122511566 109 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 351
Gm47131 9 122512549 to 122513598 1049 - lincRNA gene predicted gene, 47131
Gm47133 9 122531746 to 122535020 3274 - lincRNA gene predicted gene, 47133
Cpgi22535 9 122568588 to 122570487 1899 CpG island CpG island 22535
Tssr87846 9 122569088 to 122569090 2 + TSS region transcription start site region 87846
Cpgi22536 9 122571194 to 122572941 1747 CpG island CpG island 22536
Tssr87847 9 122572493 to 122572511 18 + TSS region transcription start site region 87847
9530059O14Rik 9 122572501 to 122580647 8146 + lincRNA gene RIKEN cDNA 9530059O14 gene
Cpgi22537 9 122595242 to 122595680 438 CpG island CpG island 22537
Tssr87848 9 122601155 to 122601163 8 + TSS region transcription start site region 87848
Gm47134 9 122640169 to 122647830 7661 - lincRNA gene predicted gene, 47134
Tssr87849 9 122681893 to 122681896 3 + TSS region transcription start site region 87849
Tssr87850 9 122682122 to 122682133 11 + TSS region transcription start site region 87850
Tssr87851 9 122682172 to 122682184 12 + TSS region transcription start site region 87851
Gm47135 9 122682742 to 122683641 899 + pseudogene predicted gene, 47135
Mir138-1 9 122682876 to 122682974 98 + miRNA gene microRNA 138-1
Tssr87852 9 122682958 to 122682960 2 + TSS region transcription start site region 87852
Tssr87853 9 122686765 to 122686769 4 + TSS region transcription start site region 87853
Tssr87854 9 122686795 to 122686802 7 + TSS region transcription start site region 87854
Gm35501 9 122686799 to 122693642 6843 + lincRNA gene predicted gene, 35501
Gm47136 9 122687068 to 122714333 27265 - lincRNA gene predicted gene, 47136
D9Mit52 9 122702676 to 122702847 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 52
Gm47137 9 122715203 to 122715364 161 + pseudogene predicted gene, 47137
Tssr87855 9 122739278 to 122739284 6 + TSS region transcription start site region 87855
Cpgi22538 9 122747070 to 122747580 510 CpG island CpG island 22538
Tssr87856 9 122747193 to 122747223 30 + TSS region transcription start site region 87856
Tssr87857 9 122747224 to 122747241 17 + TSS region transcription start site region 87857
Tssr87858 9 122747261 to 122747264 3 + TSS region transcription start site region 87858
Topaz1 9 122747346 to 122802074 54728 + protein coding gene testis and ovary specific PAZ domain containing 1
Cpgi22539 9 122805385 to 122806055 670 CpG island CpG island 22539
Tssr92101 9 122805421 to 122805432 11 - TSS region transcription start site region 92101
Tssr92102 9 122805439 to 122805456 17 - TSS region transcription start site region 92102
Tssr92103 9 122805459 to 122805475 16 - TSS region transcription start site region 92103
Tssr87859 9 122805524 to 122805580 56 + TSS region transcription start site region 87859
Tcaim 9 122805539 to 122836334 30795 + protein coding gene T cell activation inhibitor, mitochondrial
Tssr87860 9 122805591 to 122805625 34 + TSS region transcription start site region 87860
Tssr87861 9 122805626 to 122805668 42 + TSS region transcription start site region 87861
Gm25341 9 122812564 to 122812831 267 + unclassified non-coding RNA gene predicted gene, 25341
Cpgi22540 9 122837921 to 122838119 198 CpG island CpG island 22540
Gm35549 9 122838164 to 122845227 7063 - protein coding gene predicted gene, 35549
Tssr92104 9 122843976 to 122843985 9 - TSS region transcription start site region 92104
Tssr92105 9 122843994 to 122844001 7 - TSS region transcription start site region 92105
Tssr92106 9 122844014 to 122844027 13 - TSS region transcription start site region 92106
Zfp445 9 122844529 to 122866006 21477 - protein coding gene zinc finger protein 445
Gm47140 9 122847019 to 122848418 1399 - sense intronic lncRNA gene predicted gene, 47140
Tssr92107 9 122859395 to 122859401 6 - TSS region transcription start site region 92107
Cpgi22541 9 122865678 to 122866172 494 CpG island CpG island 22541
Tssr92108 9 122865915 to 122865926 11 - TSS region transcription start site region 92108
Tssr92109 9 122865938 to 122865999 61 - TSS region transcription start site region 92109
Tssr92110 9 122866008 to 122866015 7 - TSS region transcription start site region 92110
Tssr87862 9 122873924 to 122873930 6 + TSS region transcription start site region 87862
Tssr87863 9 122875514 to 122875521 7 + TSS region transcription start site region 87863
A530083I20Rik 9 122885080 to 122903531 18451 - lincRNA gene RIKEN cDNA A530083I20 gene
Cpgi22542 9 122886697 to 122887310 613 CpG island CpG island 22542
Tssr87864 9 122886802 to 122886859 57 + TSS region transcription start site region 87864
Zkscan7 9 122886979 to 122914158 27179 + protein coding gene zinc finger with KRAB and SCAN domains 7
Tssr92111 9 122903102 to 122903162 60 - TSS region transcription start site region 92111
Cpgi22543 9 122903157 to 122903608 451 CpG island CpG island 22543
Tssr87865 9 122903238 to 122903263 25 + TSS region transcription start site region 87865
Tssr87866 9 122903293 to 122903308 15 + TSS region transcription start site region 87866
Gm47145 9 122918533 to 122921342 2809 + pseudogene predicted gene, 47145
Cpgi22544 9 122922855 to 122923358 503 CpG island CpG island 22544
Tssr87867 9 122923050 to 122923092 42 + TSS region transcription start site region 87867
Zfp105 9 122923072 to 122931028 7956 + protein coding gene zinc finger protein 105
Tssr87868 9 122923103 to 122923110 7 + TSS region transcription start site region 87868
Gm46136 9 122935812 to 122942819 7007 + lincRNA gene predicted gene, 46136
Gm47146 9 122942530 to 122942691 161 + pseudogene predicted gene, 47146
1110059G10Rik 9 122945089 to 122951000 5911 - protein coding gene RIKEN cDNA 1110059G10 gene
Cpgi22545 9 122950605 to 122951513 908 CpG island CpG island 22545
Tssr92112 9 122950908 to 122950915 7 - TSS region transcription start site region 92112
Tssr92113 9 122950922 to 122950953 31 - TSS region transcription start site region 92113
Tssr92114 9 122950960 to 122951006 46 - TSS region transcription start site region 92114
Kif15 9 122951046 to 123018733 67687 + protein coding gene kinesin family member 15
Tssr87869 9 122951051 to 122951106 55 + TSS region transcription start site region 87869
Gm35691 9 122959997 to 122960412 415 - pseudogene predicted gene, 35691
Tssr87870 9 122981542 to 122981557 15 + TSS region transcription start site region 87870
Gm47148 9 122993127 to 122993704 577 + unclassified gene predicted gene, 47148
Tssr87871 9 122999176 to 122999181 5 + TSS region transcription start site region 87871
Tssr87872 9 122999194 to 122999221 27 + TSS region transcription start site region 87872
Tssr87873 9 122999450 to 122999456 6 + TSS region transcription start site region 87873
Tssr87874 9 122999465 to 122999487 22 + TSS region transcription start site region 87874
Gm9856 9 123018995 to 123021572 2577 - antisense lncRNA gene predicted gene 9856
Cpgi22546 9 123020811 to 123021955 1144 CpG island CpG island 22546
Tssr87875 9 123021119 to 123021132 13 + TSS region transcription start site region 87875
Tssr92115 9 123021214 to 123021218 4 - TSS region transcription start site region 92115
Tssr87876 9 123021315 to 123021374 59 + TSS region transcription start site region 87876
Tmem42 9 123021326 to 123023705 2379 + protein coding gene transmembrane protein 42
Tssr92116 9 123021415 to 123021463 48 - TSS region transcription start site region 92116
Gm49323 9 123021418 to 123045019 23601 + unclassified non-coding RNA gene predicted gene, 49323
Tssr92117 9 123021522 to 123021606 84 - TSS region transcription start site region 92117
Tssr87877 9 123034660 to 123034682 22 + TSS region transcription start site region 87877
Tssr87878 9 123034722 to 123034728 6 + TSS region transcription start site region 87878
Tssr87879 9 123034731 to 123034752 21 + TSS region transcription start site region 87879
Tgm4 9 123034741 to 123067558 32817 + protein coding gene transglutaminase 4 (prostate)
Tssr87880 9 123040463 to 123040468 5 + TSS region transcription start site region 87880
Tssr3056 9 123043057 to 123043087 30 + TSS region transcription start site region 3056
Tssr87881 9 123045037 to 123045052 15 + TSS region transcription start site region 87881
Tssr87882 9 123046533 to 123046549 16 + TSS region transcription start site region 87882
Tssr87883 9 123049378 to 123049425 47 + TSS region transcription start site region 87883
Tssr87884 9 123051184 to 123051204 20 + TSS region transcription start site region 87884
Tssr87885 9 123051326 to 123051347 21 + TSS region transcription start site region 87885
Tssr92118 9 123051423 to 123051445 22 - TSS region transcription start site region 92118
Tssr87886 9 123052735 to 123052749 14 + TSS region transcription start site region 87886
Tssr87887 9 123056430 to 123056436 6 + TSS region transcription start site region 87887
Tssr87888 9 123056444 to 123056453 9 + TSS region transcription start site region 87888
Tssr87889 9 123056563 to 123056574 11 + TSS region transcription start site region 87889
Tssr87890 9 123056591 to 123056593 2 + TSS region transcription start site region 87890
Tssr87891 9 123056642 to 123056653 11 + TSS region transcription start site region 87891
Tssr92119 9 123056670 to 123056677 7 - TSS region transcription start site region 92119
Tssr87892 9 123060567 to 123060571 4 + TSS region transcription start site region 87892
Tssr87893 9 123061640 to 123061641 1 + TSS region transcription start site region 87893
Tssr87894 9 123061738 to 123061748 10 + TSS region transcription start site region 87894
Tssr92120 9 123061772 to 123061779 7 - TSS region transcription start site region 92120
Tssr92121 9 123061786 to 123061789 3 - TSS region transcription start site region 92121
Tssr92122 9 123061795 to 123061802 7 - TSS region transcription start site region 92122
Tssr87895 9 123061805 to 123061810 5 + TSS region transcription start site region 87895
Tssr92123 9 123061815 to 123061822 7 - TSS region transcription start site region 92123
Tssr92124 9 123061846 to 123061877 31 - TSS region transcription start site region 92124
Tssr87896 9 123062390 to 123062405 15 + TSS region transcription start site region 87896
Zdhhc3 9 123066802 to 123113205 46403 - protein coding gene zinc finger, DHHC domain containing 3
Tssr87897 9 123067118 to 123067124 6 + TSS region transcription start site region 87897
Tssr87898 9 123067192 to 123067198 6 + TSS region transcription start site region 87898
Tssr87899 9 123067409 to 123067419 10 + TSS region transcription start site region 87899
Tssr87900 9 123067473 to 123067525 52 + TSS region transcription start site region 87900
Tssr92125 9 123071313 to 123071316 3 - TSS region transcription start site region 92125
Tssr92126 9 123085279 to 123085286 7 - TSS region transcription start site region 92126
Tssr92127 9 123100553 to 123100571 18 - TSS region transcription start site region 92127
Tssr3057 9 123104519 to 123104535 16 - TSS region transcription start site region 3057
Cpgi22547 9 123112491 to 123113717 1226 CpG island CpG island 22547
Tssr87901 9 123112890 to 123112908 18 + TSS region transcription start site region 87901
Tssr87902 9 123112918 to 123112932 14 + TSS region transcription start site region 87902
Tssr92128 9 123113131 to 123113156 25 - TSS region transcription start site region 92128
Tssr92129 9 123113158 to 123113204 46 - TSS region transcription start site region 92129
Tssr92130 9 123113206 to 123113213 7 - TSS region transcription start site region 92130
Tssr87903 9 123113227 to 123113264 37 + TSS region transcription start site region 87903
Exosc7 9 123113231 to 123136129 22898 + protein coding gene exosome component 7
Tssr92131 9 123113312 to 123113329 17 - TSS region transcription start site region 92131
Gm47159 9 123138466 to 123139641 1175 + unclassified gene predicted gene, 47159
Tssr87904 9 123150817 to 123150851 34 + TSS region transcription start site region 87904
Tssr87905 9 123150859 to 123150868 9 + TSS region transcription start site region 87905
Tssr87906 9 123150941 to 123151021 80 + TSS region transcription start site region 87906
Clec3b 9 123150946 to 123157432 6486 + protein coding gene C-type lectin domain family 3, member b
Cpgi22548 9 123156530 to 123157245 715 CpG island CpG island 22548
Gm23323 9 123162371 to 123162503 132 + snoRNA gene predicted gene, 23323
Cdcp1 9 123170824 to 123216038 45214 - protein coding gene CUB domain containing protein 1
D9Mit322 9 123187526 to 123187669 143 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-322
Cpgi22549 9 123215377 to 123216186 809 CpG island CpG island 22549
Tssr92132 9 123215942 to 123216016 74 - TSS region transcription start site region 92132
Tssr92133 9 123216022 to 123216046 24 - TSS region transcription start site region 92133
Tmem158 9 123259053 to 123260764 1711 - protein coding gene transmembrane protein 158
Cpgi22550 9 123259373 to 123261088 1715 CpG island CpG island 22550
Tssr92134 9 123260756 to 123260773 17 - TSS region transcription start site region 92134
Tssr92135 9 123260776 to 123260803 27 - TSS region transcription start site region 92135
Tssr92136 9 123260814 to 123260822 8 - TSS region transcription start site region 92136
Gm47162 9 123307084 to 123307983 899 + lincRNA gene predicted gene, 47162
Scp2-ps2 9 123307508 to 123307986 478 - pseudogene sterol carrier protein 2, pseudogene 2
Tssr92137 9 123307938 to 123307957 19 - TSS region transcription start site region 92137
Tssr92138 9 123307976 to 123307989 13 - TSS region transcription start site region 92138
Cpgi22551 9 123366739 to 123367233 494 CpG island CpG island 22551
Tssr87907 9 123366921 to 123366953 32 + TSS region transcription start site region 87907
Lars2 9 123366927 to 123462666 95739 + protein coding gene leucyl-tRNA synthetase, mitochondrial
Gm46137 9 123381659 to 123390477 8818 + lncRNA gene predicted gene, 46137
Tssr87908 9 123461896 to 123461910 14 + TSS region transcription start site region 87908
Tssr87909 9 123461928 to 123461984 56 + TSS region transcription start site region 87909
Cpgi22552 9 123461958 to 123462186 228 CpG island CpG island 22552
Tssr87910 9 123461993 to 123462000 7 + TSS region transcription start site region 87910
Tssr87911 9 123462075 to 123462090 15 + TSS region transcription start site region 87911