Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:122045874-122424423

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39465 9 122029509 to 122051534 22025 - lincRNA gene predicted gene, 39465
Gm39464 9 122046622 to 122051235 4613 + lincRNA gene predicted gene, 39464
Tssr92086 9 122051211 to 122051218 7 - TSS region transcription start site region 92086
Cpgi22531 9 122116970 to 122118039 1069 CpG island CpG island 22531
Tssr87829 9 122117258 to 122117326 68 + TSS region transcription start site region 87829
Snrk 9 122117266 to 122169702 52436 + protein coding gene SNF related kinase
Tssr87830 9 122117338 to 122117367 29 + TSS region transcription start site region 87830
Tssr87831 9 122117380 to 122117391 11 + TSS region transcription start site region 87831
Gm47122 9 122119145 to 122119495 350 + unclassified gene predicted gene, 47122
4632418H02Rik 9 122127294 to 122130014 2720 + unclassified gene RIKEN cDNA 4632418H02 gene
Tssr87832 9 122128906 to 122128914 8 + TSS region transcription start site region 87832
Tssr87833 9 122128934 to 122128950 16 + TSS region transcription start site region 87833
Tssr87834 9 122128954 to 122128963 9 + TSS region transcription start site region 87834
Tssr87835 9 122128969 to 122128986 17 + TSS region transcription start site region 87835
Gm47121 9 122142449 to 122143708 1259 + sense intronic lncRNA gene predicted gene, 47121
Tssr87836 9 122151293 to 122151298 5 + TSS region transcription start site region 87836
Ano10 9 122175874 to 122294423 118549 - protein coding gene anoctamin 10
Tssr92087 9 122187562 to 122187570 8 - TSS region transcription start site region 92087
Tssr92088 9 122187605 to 122187634 29 - TSS region transcription start site region 92088
Mir8106 9 122273890 to 122274028 138 - miRNA gene microRNA 8106
Cpgi22532 9 122293795 to 122294859 1064 CpG island CpG island 22532
Tssr92089 9 122294343 to 122294355 12 - TSS region transcription start site region 92089
Tssr92090 9 122294361 to 122294407 46 - TSS region transcription start site region 92090
Tssr92091 9 122294409 to 122294431 22 - TSS region transcription start site region 92091
Gm47126 9 122295911 to 122304879 8968 + bidirectional promoter lncRNA gene predicted gene, 47126
Tssr92092 9 122305413 to 122305426 13 - TSS region transcription start site region 92092
Gm26797 9 122307403 to 122311026 3623 - lincRNA gene predicted gene, 26797
Cpgi22533 9 122310803 to 122310979 176 CpG island CpG island 22533
Tssr92093 9 122310896 to 122310910 14 - TSS region transcription start site region 92093
Tssr92094 9 122310921 to 122310936 15 - TSS region transcription start site region 92094
Tssr92095 9 122310945 to 122310955 10 - TSS region transcription start site region 92095
Gm35289 9 122316820 to 122320008 3188 + lncRNA gene predicted gene, 35289
Gm35398 9 122343030 to 122345595 2565 - lncRNA gene predicted gene, 35398
Tssr92096 9 122349228 to 122349255 27 - TSS region transcription start site region 92096
Tssr87837 9 122349570 to 122349603 33 + TSS region transcription start site region 87837
Cpgi22534 9 122351114 to 122352420 1306 CpG island CpG island 22534
Tssr92097 9 122351397 to 122351444 47 - TSS region transcription start site region 92097
Tssr92098 9 122351484 to 122351502 18 - TSS region transcription start site region 92098
Tssr92099 9 122351516 to 122351532 16 - TSS region transcription start site region 92099
Tssr87838 9 122351555 to 122351565 10 + TSS region transcription start site region 87838
Tssr92100 9 122351600 to 122351610 10 - TSS region transcription start site region 92100
Abhd5 9 122351608 to 122381524 29916 + protein coding gene abhydrolase domain containing 5
Tssr87839 9 122351723 to 122351738 15 + TSS region transcription start site region 87839
Tssr87840 9 122351763 to 122351771 8 + TSS region transcription start site region 87840
Tssr87841 9 122351775 to 122351784 9 + TSS region transcription start site region 87841
Tssr87842 9 122351894 to 122351939 45 + TSS region transcription start site region 87842
Tssr87843 9 122358895 to 122358898 3 + TSS region transcription start site region 87843
A730085K08Rik 9 122382022 to 122398801 16779 - antisense lncRNA gene RIKEN cDNA A730085K08 gene
Gm46135 9 122382834 to 122384798 1964 + lncRNA gene predicted gene, 46135
Tssr87844 9 122421302 to 122421307 5 + TSS region transcription start site region 87844
Tssr87845 9 122422120 to 122422128 8 + TSS region transcription start site region 87845
Gm47128 9 122422136 to 122423376 1240 + lincRNA gene predicted gene, 47128