Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:121838354-122182140

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc13 9 121797627 to 121839461 41834 - protein coding gene coiled-coil domain containing 13
Cpgi22525 9 121838827 to 121839666 839 CpG island CpG island 22525
Tssr92072 9 121839424 to 121839439 15 - TSS region transcription start site region 92072
Tssr92073 9 121839460 to 121839465 5 - TSS region transcription start site region 92073
Tssr92074 9 121839470 to 121839497 27 - TSS region transcription start site region 92074
Tssr92075 9 121839507 to 121839512 5 - TSS region transcription start site region 92075
Gm47111 9 121843822 to 121846937 3115 - unclassified gene predicted gene, 47111
Tssr92076 9 121847018 to 121847022 4 - TSS region transcription start site region 92076
Higd1a 9 121848560 to 121858357 9797 - protein coding gene HIG1 domain family, member 1A
Cpgi22526 9 121856947 to 121858302 1355 CpG island CpG island 22526
Tssr92077 9 121857557 to 121857572 15 - TSS region transcription start site region 92077
Tssr92078 9 121857576 to 121857633 57 - TSS region transcription start site region 92078
Gm47112 9 121857680 to 121859209 1529 + antisense lncRNA gene predicted gene, 47112
Tssr87819 9 121857732 to 121857752 20 + TSS region transcription start site region 87819
Tssr87820 9 121857761 to 121857768 7 + TSS region transcription start site region 87820
Tssr92079 9 121857894 to 121857948 54 - TSS region transcription start site region 92079
Tssr92080 9 121857952 to 121858012 60 - TSS region transcription start site region 92080
Gm47113 9 121869496 to 121879936 10440 + lincRNA gene predicted gene, 47113
Cpgi22527 9 121890699 to 121890876 177 CpG island CpG island 22527
Ackr2 9 121898355 to 121911074 12719 + protein coding gene atypical chemokine receptor 2
Tssr87821 9 121898409 to 121898423 14 + TSS region transcription start site region 87821
Tssr87822 9 121898458 to 121898466 8 + TSS region transcription start site region 87822
Cyp8b1 9 121914356 to 121916305 1949 - protein coding gene cytochrome P450, family 8, subfamily b, polypeptide 1
Tssr92081 9 121914680 to 121914701 21 - TSS region transcription start site region 92081
Tssr92082 9 121914819 to 121914864 45 - TSS region transcription start site region 92082
Tssr92083 9 121915175 to 121915184 9 - TSS region transcription start site region 92083
Tssr92084 9 121916288 to 121916315 27 - TSS region transcription start site region 92084
Gm47115 9 121934080 to 121935402 1322 + pseudogene predicted gene, 47115
1700048O20Rik 9 121937275 to 121947016 9741 + lincRNA gene RIKEN cDNA 1700048O20 gene
Tssr87823 9 121937285 to 121937297 12 + TSS region transcription start site region 87823
Tssr87824 9 121937777 to 121937805 28 + TSS region transcription start site region 87824
Gm49343 9 121937973 to 121965089 27116 + lincRNA gene predicted gene, 49343
Cpgi22528 9 121938005 to 121938420 415 CpG island CpG island 22528
Tssr87825 9 121938099 to 121938126 27 + TSS region transcription start site region 87825
Gask1a 9 121950988 to 121980209 29221 + protein coding gene golgi associated kinase 1A
Tssr87826 9 121951008 to 121951044 36 + TSS region transcription start site region 87826
Tssr87827 9 121951047 to 121951087 40 + TSS region transcription start site region 87827
Pomgnt2 9 121981606 to 121996026 14420 - protein coding gene protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
Cpgi22529 9 121982109 to 121983800 1691 CpG island CpG island 22529
Cpgi22530 9 121995409 to 121996110 701 CpG island CpG island 22530
Tssr92085 9 121995962 to 121996041 79 - TSS region transcription start site region 92085
Tssr87828 9 121996097 to 121996115 18 + TSS region transcription start site region 87828
Gm39463 9 121996118 to 122012455 16337 + antisense lncRNA gene predicted gene, 39463
Gm47117 9 122008354 to 122012140 3786 - lincRNA gene predicted gene, 47117
Gm39465 9 122029509 to 122051534 22025 - lincRNA gene predicted gene, 39465
Gm39464 9 122046622 to 122051235 4613 + lincRNA gene predicted gene, 39464
Tssr92086 9 122051211 to 122051218 7 - TSS region transcription start site region 92086
Cpgi22531 9 122116970 to 122118039 1069 CpG island CpG island 22531
Tssr87829 9 122117258 to 122117326 68 + TSS region transcription start site region 87829
Snrk 9 122117266 to 122169702 52436 + protein coding gene SNF related kinase
Tssr87830 9 122117338 to 122117367 29 + TSS region transcription start site region 87830
Tssr87831 9 122117380 to 122117391 11 + TSS region transcription start site region 87831
Gm47122 9 122119145 to 122119495 350 + unclassified gene predicted gene, 47122
4632418H02Rik 9 122127294 to 122130014 2720 + unclassified gene RIKEN cDNA 4632418H02 gene
Tssr87832 9 122128906 to 122128914 8 + TSS region transcription start site region 87832
Tssr87833 9 122128934 to 122128950 16 + TSS region transcription start site region 87833
Tssr87834 9 122128954 to 122128963 9 + TSS region transcription start site region 87834
Tssr87835 9 122128969 to 122128986 17 + TSS region transcription start site region 87835
Gm47121 9 122142449 to 122143708 1259 + sense intronic lncRNA gene predicted gene, 47121
Tssr87836 9 122151293 to 122151298 5 + TSS region transcription start site region 87836
Ano10 9 122175874 to 122294423 118549 - protein coding gene anoctamin 10