Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:121742275-122142016

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nktr 9 121719169 to 121756843 37674 + protein coding gene natural killer tumor recognition sequence
Tssr87813 9 121746523 to 121746552 29 + TSS region transcription start site region 87813
Tssr87814 9 121748047 to 121748068 21 + TSS region transcription start site region 87814
E530011L22Rik 9 121756640 to 121759943 3303 - antisense lncRNA gene RIKEN cDNA E530011L22 gene
Cpgi22523 9 121758919 to 121761015 2096 CpG island CpG island 22523
Zfp651 9 121759330 to 121771742 12412 + protein coding gene zinc finger protein 651
Tssr87815 9 121759732 to 121759767 35 + TSS region transcription start site region 87815
Tssr92066 9 121759903 to 121759920 17 - TSS region transcription start site region 92066
Tssr87816 9 121760000 to 121760061 61 + TSS region transcription start site region 87816
Gm47108 9 121775024 to 121778146 3122 - unclassified gene predicted gene, 47108
Klhl40 9 121777607 to 121783818 6211 + protein coding gene kelch-like 40
Cpgi22524 9 121777667 to 121779034 1367 CpG island CpG island 22524
Tssr87817 9 121777684 to 121777701 17 + TSS region transcription start site region 87817
Tssr87818 9 121777712 to 121777723 11 + TSS region transcription start site region 87818
Hhatl 9 121784016 to 121792507 8491 - protein coding gene hedgehog acyltransferase-like
Tssr92067 9 121791083 to 121791090 7 - TSS region transcription start site region 92067
Tssr92068 9 121792331 to 121792389 58 - TSS region transcription start site region 92068
Tssr92069 9 121792416 to 121792426 10 - TSS region transcription start site region 92069
Tssr92070 9 121792478 to 121792490 12 - TSS region transcription start site region 92070
Ccdc13 9 121797627 to 121839461 41834 - protein coding gene coiled-coil domain containing 13
Tssr92071 9 121809811 to 121809824 13 - TSS region transcription start site region 92071
D9Mit152 9 121812590 to 121812724 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 152
Gm17163 9 121820289 to 121831193 10904 + antisense lncRNA gene predicted gene 17163
Cpgi22525 9 121838827 to 121839666 839 CpG island CpG island 22525
Tssr92072 9 121839424 to 121839439 15 - TSS region transcription start site region 92072
Tssr92073 9 121839460 to 121839465 5 - TSS region transcription start site region 92073
Tssr92074 9 121839470 to 121839497 27 - TSS region transcription start site region 92074
Tssr92075 9 121839507 to 121839512 5 - TSS region transcription start site region 92075
Gm47111 9 121843822 to 121846937 3115 - unclassified gene predicted gene, 47111
Tssr92076 9 121847018 to 121847022 4 - TSS region transcription start site region 92076
Higd1a 9 121848560 to 121858357 9797 - protein coding gene HIG1 domain family, member 1A
Cpgi22526 9 121856947 to 121858302 1355 CpG island CpG island 22526
Tssr92077 9 121857557 to 121857572 15 - TSS region transcription start site region 92077
Tssr92078 9 121857576 to 121857633 57 - TSS region transcription start site region 92078
Gm47112 9 121857680 to 121859209 1529 + antisense lncRNA gene predicted gene, 47112
Tssr87819 9 121857732 to 121857752 20 + TSS region transcription start site region 87819
Tssr87820 9 121857761 to 121857768 7 + TSS region transcription start site region 87820
Tssr92079 9 121857894 to 121857948 54 - TSS region transcription start site region 92079
Tssr92080 9 121857952 to 121858012 60 - TSS region transcription start site region 92080
Gm47113 9 121869496 to 121879936 10440 + lincRNA gene predicted gene, 47113
Cpgi22527 9 121890699 to 121890876 177 CpG island CpG island 22527
Ackr2 9 121898355 to 121911074 12719 + protein coding gene atypical chemokine receptor 2
Tssr87821 9 121898409 to 121898423 14 + TSS region transcription start site region 87821
Tssr87822 9 121898458 to 121898466 8 + TSS region transcription start site region 87822
Cyp8b1 9 121914356 to 121916305 1949 - protein coding gene cytochrome P450, family 8, subfamily b, polypeptide 1
Tssr92081 9 121914680 to 121914701 21 - TSS region transcription start site region 92081
Tssr92082 9 121914819 to 121914864 45 - TSS region transcription start site region 92082
Tssr92083 9 121915175 to 121915184 9 - TSS region transcription start site region 92083
Tssr92084 9 121916288 to 121916315 27 - TSS region transcription start site region 92084
Gm47115 9 121934080 to 121935402 1322 + pseudogene predicted gene, 47115
1700048O20Rik 9 121937275 to 121947016 9741 + lincRNA gene RIKEN cDNA 1700048O20 gene
Tssr87823 9 121937285 to 121937297 12 + TSS region transcription start site region 87823
Tssr87824 9 121937777 to 121937805 28 + TSS region transcription start site region 87824
Gm49343 9 121937973 to 121965089 27116 + lincRNA gene predicted gene, 49343
Cpgi22528 9 121938005 to 121938420 415 CpG island CpG island 22528
Tssr87825 9 121938099 to 121938126 27 + TSS region transcription start site region 87825
Gask1a 9 121950988 to 121980209 29221 + protein coding gene golgi associated kinase 1A
Tssr87826 9 121951008 to 121951044 36 + TSS region transcription start site region 87826
Tssr87827 9 121951047 to 121951087 40 + TSS region transcription start site region 87827
Pomgnt2 9 121981606 to 121996026 14420 - protein coding gene protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
Cpgi22529 9 121982109 to 121983800 1691 CpG island CpG island 22529
Cpgi22530 9 121995409 to 121996110 701 CpG island CpG island 22530
Tssr92085 9 121995962 to 121996041 79 - TSS region transcription start site region 92085
Tssr87828 9 121996097 to 121996115 18 + TSS region transcription start site region 87828
Gm39463 9 121996118 to 122012455 16337 + antisense lncRNA gene predicted gene, 39463
Gm47117 9 122008354 to 122012140 3786 - lincRNA gene predicted gene, 47117
Gm39465 9 122029509 to 122051534 22025 - lincRNA gene predicted gene, 39465
Gm39464 9 122046622 to 122051235 4613 + lincRNA gene predicted gene, 39464
Tssr92086 9 122051211 to 122051218 7 - TSS region transcription start site region 92086
Cpgi22531 9 122116970 to 122118039 1069 CpG island CpG island 22531
Tssr87829 9 122117258 to 122117326 68 + TSS region transcription start site region 87829
Snrk 9 122117266 to 122169702 52436 + protein coding gene SNF related kinase
Tssr87830 9 122117338 to 122117367 29 + TSS region transcription start site region 87830
Tssr87831 9 122117380 to 122117391 11 + TSS region transcription start site region 87831
Gm47122 9 122119145 to 122119495 350 + unclassified gene predicted gene, 47122
4632418H02Rik 9 122127294 to 122130014 2720 + unclassified gene RIKEN cDNA 4632418H02 gene
Tssr87832 9 122128906 to 122128914 8 + TSS region transcription start site region 87832
Tssr87833 9 122128934 to 122128950 16 + TSS region transcription start site region 87833
Tssr87834 9 122128954 to 122128963 9 + TSS region transcription start site region 87834
Tssr87835 9 122128969 to 122128986 17 + TSS region transcription start site region 87835