Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:121381083-122201090

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trak1 9 121297507 to 121474919 177412 + protein coding gene trafficking protein, kinesin binding 1
Cpgi22514 9 121382576 to 121382841 265 CpG island CpG island 22514
Tssr87778 9 121382789 to 121382807 18 + TSS region transcription start site region 87778
Tssr87779 9 121382859 to 121382893 34 + TSS region transcription start site region 87779
Tssr87780 9 121403414 to 121403528 114 + TSS region transcription start site region 87780
Tssr87781 9 121415952 to 121415961 9 + TSS region transcription start site region 87781
Tssr87782 9 121415969 to 121415985 16 + TSS region transcription start site region 87782
Cpgi22515 9 121443701 to 121444146 445 CpG island CpG island 22515
Cpgi22516 9 121446603 to 121446826 223 CpG island CpG island 22516
Tssr92042 9 121452469 to 121452475 6 - TSS region transcription start site region 92042
Tssr87783 9 121452832 to 121452863 31 + TSS region transcription start site region 87783
Tssr92043 9 121454659 to 121454678 19 - TSS region transcription start site region 92043
Tssr92044 9 121454739 to 121454744 5 - TSS region transcription start site region 92044
Tssr87784 9 121460230 to 121460239 9 + TSS region transcription start site region 87784
Tssr87785 9 121460252 to 121460272 20 + TSS region transcription start site region 87785
Tssr87786 9 121460280 to 121460305 25 + TSS region transcription start site region 87786
Tssr87787 9 121472461 to 121472465 4 + TSS region transcription start site region 87787
D9Mit151 9 121477874 to 121477987 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 151
Cck 9 121489824 to 121495694 5870 - protein coding gene cholecystokinin
Tssr87788 9 121489960 to 121489966 6 + TSS region transcription start site region 87788
Tssr92045 9 121489999 to 121490010 11 - TSS region transcription start site region 92045
Tssr92046 9 121490011 to 121490037 26 - TSS region transcription start site region 92046
Cpgi22517 9 121494118 to 121494758 640 CpG island CpG island 22517
Tssr92047 9 121494849 to 121494865 16 - TSS region transcription start site region 92047
Tssr92048 9 121495651 to 121495672 21 - TSS region transcription start site region 92048
Tssr92049 9 121495678 to 121495689 11 - TSS region transcription start site region 92049
Tssr92050 9 121495708 to 121495714 6 - TSS region transcription start site region 92050
Gm47095 9 121515665 to 121536151 20486 - lincRNA gene predicted gene, 47095
Gm38661 9 121522968 to 121528157 5189 + lincRNA gene predicted gene, 38661
Lyzl4 9 121577841 to 121641566 63725 - protein coding gene lysozyme-like 4
Tssr92051 9 121586935 to 121586946 11 - TSS region transcription start site region 92051
Tssr92052 9 121586948 to 121586966 18 - TSS region transcription start site region 92052
Tssr87789 9 121586994 to 121587005 11 + TSS region transcription start site region 87789
Tssr87790 9 121587016 to 121587046 30 + TSS region transcription start site region 87790
Lyzl4os 9 121587020 to 121614255 27235 + antisense lncRNA gene lysozyme-like 4, opposite strand
Tssr92053 9 121592030 to 121592041 11 - TSS region transcription start site region 92053
Tssr92054 9 121592066 to 121592082 16 - TSS region transcription start site region 92054
Tssr92055 9 121597209 to 121597215 6 - TSS region transcription start site region 92055
Tssr87791 9 121599799 to 121599804 5 + TSS region transcription start site region 87791
Gm47097 9 121629891 to 121631370 1479 - unclassified gene predicted gene, 47097
Cpgi22518 9 121641505 to 121643273 1768 CpG island CpG island 22518
Vipr1 9 121642716 to 121672954 30238 + protein coding gene vasoactive intestinal peptide receptor 1
Tssr87792 9 121642726 to 121642757 31 + TSS region transcription start site region 87792
Tssr87793 9 121642768 to 121642783 15 + TSS region transcription start site region 87793
Cpgi22519 9 121669266 to 121669872 606 CpG island CpG island 22519
Tssr92056 9 121675102 to 121675112 10 - TSS region transcription start site region 92056
Tssr87794 9 121675188 to 121675229 41 + TSS region transcription start site region 87794
Tssr87795 9 121675243 to 121675259 16 + TSS region transcription start site region 87795
Sec22c 9 121680045 to 121705490 25445 - protein coding gene SEC22 homolog C, vesicle trafficking protein
D9Ertd788e 9 121689692 to 121689897 205 DNA segment DNA segment, Chr 9, ERATO Doi 788, expressed
Cpgi22520 9 121704377 to 121705621 1244 CpG island CpG island 22520
Tssr92057 9 121704686 to 121704700 14 - TSS region transcription start site region 92057
Tssr92058 9 121704996 to 121705041 45 - TSS region transcription start site region 92058
Tssr87796 9 121705103 to 121705120 17 + TSS region transcription start site region 87796
Tssr92059 9 121705296 to 121705322 26 - TSS region transcription start site region 92059
Tssr92060 9 121705348 to 121705364 16 - TSS region transcription start site region 92060
Tssr92061 9 121705522 to 121705539 17 - TSS region transcription start site region 92061
Tssr92062 9 121706368 to 121706388 20 - TSS region transcription start site region 92062
Tssr87797 9 121706797 to 121706799 2 + TSS region transcription start site region 87797
Tssr87798 9 121707998 to 121708001 3 + TSS region transcription start site region 87798
Cpgi22521 9 121710162 to 121710875 713 CpG island CpG island 22521
Tssr87799 9 121710346 to 121710361 15 + TSS region transcription start site region 87799
Tssr87800 9 121710370 to 121710375 5 + TSS region transcription start site region 87800
Tssr87801 9 121710378 to 121710386 8 + TSS region transcription start site region 87801
Tssr87802 9 121710389 to 121710422 33 + TSS region transcription start site region 87802
Ss18l2 9 121710389 to 121712921 2532 + protein coding gene SS18, nBAF chromatin remodeling complex subunit like 2
Tssr87803 9 121710447 to 121710456 9 + TSS region transcription start site region 87803
Tssr87804 9 121710486 to 121710493 7 + TSS region transcription start site region 87804
Cpgi22522 9 121718670 to 121720344 1674 CpG island CpG island 22522
Tssr92063 9 121718858 to 121718892 34 - TSS region transcription start site region 92063
Tssr92064 9 121718927 to 121719013 86 - TSS region transcription start site region 92064
Tssr87805 9 121719124 to 121719137 13 + TSS region transcription start site region 87805
Tssr87806 9 121719154 to 121719166 12 + TSS region transcription start site region 87806
Nktr 9 121719169 to 121756843 37674 + protein coding gene natural killer tumor recognition sequence
Tssr87807 9 121719172 to 121719278 106 + TSS region transcription start site region 87807
Tssr87808 9 121719287 to 121719305 18 + TSS region transcription start site region 87808
Tssr87809 9 121719403 to 121719471 68 + TSS region transcription start site region 87809
Tssr87810 9 121719842 to 121719846 4 + TSS region transcription start site region 87810
Tssr92065 9 121720088 to 121720093 5 - TSS region transcription start site region 92065
Tssr87811 9 121720566 to 121720569 3 + TSS region transcription start site region 87811
Tssr87812 9 121730666 to 121730705 39 + TSS region transcription start site region 87812
Tssr87813 9 121746523 to 121746552 29 + TSS region transcription start site region 87813
Tssr87814 9 121748047 to 121748068 21 + TSS region transcription start site region 87814
E530011L22Rik 9 121756640 to 121759943 3303 - antisense lncRNA gene RIKEN cDNA E530011L22 gene
Cpgi22523 9 121758919 to 121761015 2096 CpG island CpG island 22523
Zfp651 9 121759330 to 121771742 12412 + protein coding gene zinc finger protein 651
Tssr87815 9 121759732 to 121759767 35 + TSS region transcription start site region 87815
Tssr92066 9 121759903 to 121759920 17 - TSS region transcription start site region 92066
Tssr87816 9 121760000 to 121760061 61 + TSS region transcription start site region 87816
Gm47108 9 121775024 to 121778146 3122 - unclassified gene predicted gene, 47108
Klhl40 9 121777607 to 121783818 6211 + protein coding gene kelch-like 40
Cpgi22524 9 121777667 to 121779034 1367 CpG island CpG island 22524
Tssr87817 9 121777684 to 121777701 17 + TSS region transcription start site region 87817
Tssr87818 9 121777712 to 121777723 11 + TSS region transcription start site region 87818
Hhatl 9 121784016 to 121792507 8491 - protein coding gene hedgehog acyltransferase-like
Tssr92067 9 121791083 to 121791090 7 - TSS region transcription start site region 92067
Tssr92068 9 121792331 to 121792389 58 - TSS region transcription start site region 92068
Tssr92069 9 121792416 to 121792426 10 - TSS region transcription start site region 92069
Tssr92070 9 121792478 to 121792490 12 - TSS region transcription start site region 92070
Ccdc13 9 121797627 to 121839461 41834 - protein coding gene coiled-coil domain containing 13
Tssr92071 9 121809811 to 121809824 13 - TSS region transcription start site region 92071
D9Mit152 9 121812590 to 121812724 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 152
Gm17163 9 121820289 to 121831193 10904 + antisense lncRNA gene predicted gene 17163
Cpgi22525 9 121838827 to 121839666 839 CpG island CpG island 22525
Tssr92072 9 121839424 to 121839439 15 - TSS region transcription start site region 92072
Tssr92073 9 121839460 to 121839465 5 - TSS region transcription start site region 92073
Tssr92074 9 121839470 to 121839497 27 - TSS region transcription start site region 92074
Tssr92075 9 121839507 to 121839512 5 - TSS region transcription start site region 92075
Gm47111 9 121843822 to 121846937 3115 - unclassified gene predicted gene, 47111
Tssr92076 9 121847018 to 121847022 4 - TSS region transcription start site region 92076
Higd1a 9 121848560 to 121858357 9797 - protein coding gene HIG1 domain family, member 1A
Cpgi22526 9 121856947 to 121858302 1355 CpG island CpG island 22526
Tssr92077 9 121857557 to 121857572 15 - TSS region transcription start site region 92077
Tssr92078 9 121857576 to 121857633 57 - TSS region transcription start site region 92078
Gm47112 9 121857680 to 121859209 1529 + antisense lncRNA gene predicted gene, 47112
Tssr87819 9 121857732 to 121857752 20 + TSS region transcription start site region 87819
Tssr87820 9 121857761 to 121857768 7 + TSS region transcription start site region 87820
Tssr92079 9 121857894 to 121857948 54 - TSS region transcription start site region 92079
Tssr92080 9 121857952 to 121858012 60 - TSS region transcription start site region 92080
Gm47113 9 121869496 to 121879936 10440 + lincRNA gene predicted gene, 47113
Cpgi22527 9 121890699 to 121890876 177 CpG island CpG island 22527
Ackr2 9 121898355 to 121911074 12719 + protein coding gene atypical chemokine receptor 2
Tssr87821 9 121898409 to 121898423 14 + TSS region transcription start site region 87821
Tssr87822 9 121898458 to 121898466 8 + TSS region transcription start site region 87822
Cyp8b1 9 121914356 to 121916305 1949 - protein coding gene cytochrome P450, family 8, subfamily b, polypeptide 1
Tssr92081 9 121914680 to 121914701 21 - TSS region transcription start site region 92081
Tssr92082 9 121914819 to 121914864 45 - TSS region transcription start site region 92082
Tssr92083 9 121915175 to 121915184 9 - TSS region transcription start site region 92083
Tssr92084 9 121916288 to 121916315 27 - TSS region transcription start site region 92084
Gm47115 9 121934080 to 121935402 1322 + pseudogene predicted gene, 47115
1700048O20Rik 9 121937275 to 121947016 9741 + lincRNA gene RIKEN cDNA 1700048O20 gene
Tssr87823 9 121937285 to 121937297 12 + TSS region transcription start site region 87823
Tssr87824 9 121937777 to 121937805 28 + TSS region transcription start site region 87824
Gm49343 9 121937973 to 121965089 27116 + lincRNA gene predicted gene, 49343
Cpgi22528 9 121938005 to 121938420 415 CpG island CpG island 22528
Tssr87825 9 121938099 to 121938126 27 + TSS region transcription start site region 87825
Gask1a 9 121950988 to 121980209 29221 + protein coding gene golgi associated kinase 1A
Tssr87826 9 121951008 to 121951044 36 + TSS region transcription start site region 87826
Tssr87827 9 121951047 to 121951087 40 + TSS region transcription start site region 87827
Pomgnt2 9 121981606 to 121996026 14420 - protein coding gene protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
Cpgi22529 9 121982109 to 121983800 1691 CpG island CpG island 22529
Cpgi22530 9 121995409 to 121996110 701 CpG island CpG island 22530
Tssr92085 9 121995962 to 121996041 79 - TSS region transcription start site region 92085
Tssr87828 9 121996097 to 121996115 18 + TSS region transcription start site region 87828
Gm39463 9 121996118 to 122012455 16337 + antisense lncRNA gene predicted gene, 39463
Gm47117 9 122008354 to 122012140 3786 - lincRNA gene predicted gene, 47117
Gm39465 9 122029509 to 122051534 22025 - lincRNA gene predicted gene, 39465
Gm39464 9 122046622 to 122051235 4613 + lincRNA gene predicted gene, 39464
Tssr92086 9 122051211 to 122051218 7 - TSS region transcription start site region 92086
Cpgi22531 9 122116970 to 122118039 1069 CpG island CpG island 22531
Tssr87829 9 122117258 to 122117326 68 + TSS region transcription start site region 87829
Snrk 9 122117266 to 122169702 52436 + protein coding gene SNF related kinase
Tssr87830 9 122117338 to 122117367 29 + TSS region transcription start site region 87830
Tssr87831 9 122117380 to 122117391 11 + TSS region transcription start site region 87831
Gm47122 9 122119145 to 122119495 350 + unclassified gene predicted gene, 47122
4632418H02Rik 9 122127294 to 122130014 2720 + unclassified gene RIKEN cDNA 4632418H02 gene
Tssr87832 9 122128906 to 122128914 8 + TSS region transcription start site region 87832
Tssr87833 9 122128934 to 122128950 16 + TSS region transcription start site region 87833
Tssr87834 9 122128954 to 122128963 9 + TSS region transcription start site region 87834
Tssr87835 9 122128969 to 122128986 17 + TSS region transcription start site region 87835
Gm47121 9 122142449 to 122143708 1259 + sense intronic lncRNA gene predicted gene, 47121
Tssr87836 9 122151293 to 122151298 5 + TSS region transcription start site region 87836
Ano10 9 122175874 to 122294423 118549 - protein coding gene anoctamin 10
Tssr92087 9 122187562 to 122187570 8 - TSS region transcription start site region 92087
Tssr92088 9 122187605 to 122187634 29 - TSS region transcription start site region 92088