Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:121274999-121705010

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ulk4 9 120964454 to 121286187 321733 - protein coding gene unc-51-like kinase 4
Cpgi22511 9 121276966 to 121278083 1117 CpG island CpG island 22511
Tssr92036 9 121277160 to 121277217 57 - TSS region transcription start site region 92036
Tssr92037 9 121277676 to 121277687 11 - TSS region transcription start site region 92037
Gm34655 9 121277796 to 121279883 2087 + bidirectional promoter lncRNA gene predicted gene, 34655
Cpgi22512 9 121285663 to 121285963 300 CpG island CpG island 22512
Tssr92038 9 121285958 to 121285971 13 - TSS region transcription start site region 92038
Cpgi22513 9 121296874 to 121298147 1273 CpG island CpG island 22513
Tssr87767 9 121297496 to 121297552 56 + TSS region transcription start site region 87767
Trak1 9 121297507 to 121474919 177412 + protein coding gene trafficking protein, kinesin binding 1
Tssr87768 9 121297561 to 121297574 13 + TSS region transcription start site region 87768
Tssr87769 9 121298746 to 121298757 11 + TSS region transcription start site region 87769
Tssr87770 9 121298776 to 121298800 24 + TSS region transcription start site region 87770
Tssr87771 9 121300709 to 121300714 5 + TSS region transcription start site region 87771
Tssr92039 9 121313700 to 121313706 6 - TSS region transcription start site region 92039
Tssr92040 9 121314126 to 121314140 14 - TSS region transcription start site region 92040
Tssr87772 9 121314251 to 121314268 17 + TSS region transcription start site region 87772
Tssr87773 9 121314280 to 121314317 37 + TSS region transcription start site region 87773
Tssr87774 9 121314387 to 121314393 6 + TSS region transcription start site region 87774
Tssr92041 9 121314795 to 121314817 22 - TSS region transcription start site region 92041
C230053D17Rik 9 121319385 to 121321630 2245 + unclassified gene RIKEN cDNA C230053D17 gene
Gm47092 9 121346556 to 121348368 1812 + unclassified gene predicted gene, 47092
Tssr87775 9 121350907 to 121350909 2 + TSS region transcription start site region 87775
Tssr87776 9 121367020 to 121367042 22 + TSS region transcription start site region 87776
Tssr87777 9 121380658 to 121380678 20 + TSS region transcription start site region 87777
Cpgi22514 9 121382576 to 121382841 265 CpG island CpG island 22514
Tssr87778 9 121382789 to 121382807 18 + TSS region transcription start site region 87778
Tssr87779 9 121382859 to 121382893 34 + TSS region transcription start site region 87779
Tssr87780 9 121403414 to 121403528 114 + TSS region transcription start site region 87780
Tssr87781 9 121415952 to 121415961 9 + TSS region transcription start site region 87781
Tssr87782 9 121415969 to 121415985 16 + TSS region transcription start site region 87782
Cpgi22515 9 121443701 to 121444146 445 CpG island CpG island 22515
Cpgi22516 9 121446603 to 121446826 223 CpG island CpG island 22516
Tssr92042 9 121452469 to 121452475 6 - TSS region transcription start site region 92042
Tssr87783 9 121452832 to 121452863 31 + TSS region transcription start site region 87783
Tssr92043 9 121454659 to 121454678 19 - TSS region transcription start site region 92043
Tssr92044 9 121454739 to 121454744 5 - TSS region transcription start site region 92044
Tssr87784 9 121460230 to 121460239 9 + TSS region transcription start site region 87784
Tssr87785 9 121460252 to 121460272 20 + TSS region transcription start site region 87785
Tssr87786 9 121460280 to 121460305 25 + TSS region transcription start site region 87786
Tssr87787 9 121472461 to 121472465 4 + TSS region transcription start site region 87787
D9Mit151 9 121477874 to 121477987 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 151
Cck 9 121489824 to 121495694 5870 - protein coding gene cholecystokinin
Tssr87788 9 121489960 to 121489966 6 + TSS region transcription start site region 87788
Tssr92045 9 121489999 to 121490010 11 - TSS region transcription start site region 92045
Tssr92046 9 121490011 to 121490037 26 - TSS region transcription start site region 92046
Cpgi22517 9 121494118 to 121494758 640 CpG island CpG island 22517
Tssr92047 9 121494849 to 121494865 16 - TSS region transcription start site region 92047
Tssr92048 9 121495651 to 121495672 21 - TSS region transcription start site region 92048
Tssr92049 9 121495678 to 121495689 11 - TSS region transcription start site region 92049
Tssr92050 9 121495708 to 121495714 6 - TSS region transcription start site region 92050
Gm47095 9 121515665 to 121536151 20486 - lincRNA gene predicted gene, 47095
Gm38661 9 121522968 to 121528157 5189 + lincRNA gene predicted gene, 38661
Lyzl4 9 121577841 to 121641566 63725 - protein coding gene lysozyme-like 4
Tssr92051 9 121586935 to 121586946 11 - TSS region transcription start site region 92051
Tssr92052 9 121586948 to 121586966 18 - TSS region transcription start site region 92052
Tssr87789 9 121586994 to 121587005 11 + TSS region transcription start site region 87789
Tssr87790 9 121587016 to 121587046 30 + TSS region transcription start site region 87790
Lyzl4os 9 121587020 to 121614255 27235 + antisense lncRNA gene lysozyme-like 4, opposite strand
Tssr92053 9 121592030 to 121592041 11 - TSS region transcription start site region 92053
Tssr92054 9 121592066 to 121592082 16 - TSS region transcription start site region 92054
Tssr92055 9 121597209 to 121597215 6 - TSS region transcription start site region 92055
Tssr87791 9 121599799 to 121599804 5 + TSS region transcription start site region 87791
Gm47097 9 121629891 to 121631370 1479 - unclassified gene predicted gene, 47097
Cpgi22518 9 121641505 to 121643273 1768 CpG island CpG island 22518
Vipr1 9 121642716 to 121672954 30238 + protein coding gene vasoactive intestinal peptide receptor 1
Tssr87792 9 121642726 to 121642757 31 + TSS region transcription start site region 87792
Tssr87793 9 121642768 to 121642783 15 + TSS region transcription start site region 87793
Cpgi22519 9 121669266 to 121669872 606 CpG island CpG island 22519
Tssr92056 9 121675102 to 121675112 10 - TSS region transcription start site region 92056
Tssr87794 9 121675188 to 121675229 41 + TSS region transcription start site region 87794
Tssr87795 9 121675243 to 121675259 16 + TSS region transcription start site region 87795
Sec22c 9 121680045 to 121705490 25445 - protein coding gene SEC22 homolog C, vesicle trafficking protein
D9Ertd788e 9 121689692 to 121689897 205 DNA segment DNA segment, Chr 9, ERATO Doi 788, expressed
Cpgi22520 9 121704377 to 121705621 1244 CpG island CpG island 22520
Tssr92057 9 121704686 to 121704700 14 - TSS region transcription start site region 92057
Tssr92058 9 121704996 to 121705041 45 - TSS region transcription start site region 92058