Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:120224207-121478103

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38642 9 120214593 to 120257042 42449 + lncRNA gene predicted gene, 38642
Gm47059 9 120259628 to 120264358 4730 + lincRNA gene predicted gene, 47059
Berr3 9 120289445 to 120289624 179 QTL berghei resistance locus 3
Pbwg4 9 120289445 to 120289624 179 QTL postnatal body weight growth 4
Pvacm1l 9 120289445 to 120289624 179 QTL plasma vascular cell adhesion molecule 1 levels
D9Mit18 9 120289445 to 120289624 179 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 18
D9Dcr135 9 120289474 to 120289578 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 135
Dob2 9 120289624 to 86239845 -34049779 QTL dietary obesity 2
Myrip 9 120302956 to 120476101 173145 + protein coding gene myosin VIIA and Rab interacting protein
Cpgi22498 9 120303012 to 120305013 2001 CpG island CpG island 22498
Tssr87731 9 120303896 to 120303960 64 + TSS region transcription start site region 87731
Tssr87732 9 120303965 to 120304021 56 + TSS region transcription start site region 87732
Tssr92025 9 120306037 to 120306049 12 - TSS region transcription start site region 92025
Gm15566 9 120316328 to 120316917 589 + pseudogene predicted gene 15566
Gm34159 9 120344752 to 120363759 19007 - lncRNA gene predicted gene, 34159
D9Mit19 9 120362769 to 120362868 99 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 19
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13
Tssr87733 9 120384850 to 120384857 7 + TSS region transcription start site region 87733
Gm15565 9 120384911 to 120385337 426 + pseudogene predicted gene 15565
Tssr87734 9 120401917 to 120401918 1 + TSS region transcription start site region 87734
Tssr87735 9 120470341 to 120470354 13 + TSS region transcription start site region 87735
Tssr87736 9 120490156 to 120490166 10 + TSS region transcription start site region 87736
D830035M03Rik 9 120490532 to 120492547 2015 - antisense lncRNA gene RIKEN cDNA D830035M03 gene
Cpgi22499 9 120492050 to 120493335 1285 CpG island CpG island 22499
Tssr87737 9 120492501 to 120492512 11 + TSS region transcription start site region 87737
Tssr87738 9 120492604 to 120492615 11 + TSS region transcription start site region 87738
Eif1b 9 120492606 to 120495327 2721 + protein coding gene eukaryotic translation initiation factor 1B
Tssr87739 9 120492624 to 120492640 16 + TSS region transcription start site region 87739
Tssr3054 9 120492652 to 120492661 9 + TSS region transcription start site region 3054
Tssr87740 9 120492677 to 120492686 9 + TSS region transcription start site region 87740
Tssr87741 9 120492703 to 120492731 28 + TSS region transcription start site region 87741
Tssr87742 9 120492737 to 120492744 7 + TSS region transcription start site region 87742
Tssr87743 9 120521781 to 120521786 5 + TSS region transcription start site region 87743
Gm7229 9 120521813 to 120522819 1006 + pseudogene predicted gene 7229
Cpgi22500 9 120539651 to 120540070 419 CpG island CpG island 22500
Tssr87744 9 120539801 to 120539864 63 + TSS region transcription start site region 87744
Entpd3 9 120539818 to 120568327 28509 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 3
Tssr87745 9 120539876 to 120539886 10 + TSS region transcription start site region 87745
Tssr87746 9 120555585 to 120555588 3 + TSS region transcription start site region 87746
Tssr87747 9 120555599 to 120555623 24 + TSS region transcription start site region 87747
Tssr87748 9 120555638 to 120555647 9 + TSS region transcription start site region 87748
Cpgi22501 9 120571117 to 120572307 1190 CpG island CpG island 22501
Tssr92026 9 120571361 to 120571375 14 - TSS region transcription start site region 92026
Tssr92027 9 120571387 to 120571420 33 - TSS region transcription start site region 92027
Tssr87749 9 120571476 to 120571487 11 + TSS region transcription start site region 87749
Tssr87750 9 120571498 to 120571522 24 + TSS region transcription start site region 87750
Rpl14 9 120571517 to 120574653 3136 + protein coding gene ribosomal protein L14
Cpgi22502 9 120577069 to 120577849 780 CpG island CpG island 22502
5830454E08Rik 9 120577331 to 120578073 742 + lincRNA gene RIKEN cDNA 5830454E08 gene
Gm47062 9 120580135 to 120582738 2603 + pseudogene predicted gene, 47062
Cpgi22503 9 120583016 to 120583246 230 CpG island CpG island 22503
Cpgi22504 9 120602829 to 120603015 186 CpG island CpG island 22504
Gm34323 9 120603732 to 120611663 7931 + lncRNA gene predicted gene, 34323
Gm39456 9 120611654 to 120620299 8645 - lincRNA gene predicted gene, 39456
Cpgi22505 9 120619669 to 120620032 363 CpG island CpG island 22505
Tssr87751 9 120658008 to 120658024 16 + TSS region transcription start site region 87751
Cpgi22506 9 120660801 to 120661013 212 CpG island CpG island 22506
Gm39457 9 120672070 to 120675310 3240 + lncRNA gene predicted gene, 39457
Gm39458 9 120675443 to 120682465 7022 + lncRNA gene predicted gene, 39458
Tssr92028 9 120679841 to 120679846 5 - TSS region transcription start site region 92028
Gm47063 9 120705889 to 120706237 348 - unclassified gene predicted gene, 47063
Tssr92029 9 120743194 to 120743200 6 - TSS region transcription start site region 92029
Gm47064 9 120743590 to 120751143 7553 - lincRNA gene predicted gene, 47064
Gm18101 9 120754978 to 120755525 547 - pseudogene predicted gene, 18101
Tssr92030 9 120755616 to 120755644 28 - TSS region transcription start site region 92030
D9Mit121 9 120772549 to 120772675 126 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 121
Tssr92031 9 120789805 to 120789810 5 - TSS region transcription start site region 92031
Gm23624 9 120791465 to 120791785 320 - unclassified non-coding RNA gene predicted gene, 23624
Gm47066 9 120791986 to 120794882 2896 + lincRNA gene predicted gene, 47066
Tssr92032 9 120807036 to 120807039 3 - TSS region transcription start site region 92032
Cpgi22507 9 120818718 to 120818929 211 CpG island CpG island 22507
Tssr87752 9 120821109 to 120821115 6 + TSS region transcription start site region 87752
Cpgi22508 9 120833907 to 120834166 259 CpG island CpG island 22508
Gm39459 9 120834369 to 120844825 10456 + lincRNA gene predicted gene, 39459
Gm47068 9 120843445 to 120846181 2736 - lincRNA gene predicted gene, 47068
Gm47069 9 120849207 to 120853103 3896 + lincRNA gene predicted gene, 47069
Gm19385 9 120861615 to 120866756 5141 - lincRNA gene predicted gene, 19385
Tssr92033 9 120866540 to 120866549 9 - TSS region transcription start site region 92033
Tssr87753 9 120867070 to 120867096 26 + TSS region transcription start site region 87753
Gm34425 9 120869961 to 120872284 2323 + lincRNA gene predicted gene, 34425
Gm47070 9 120869984 to 120871030 1046 - lincRNA gene predicted gene, 47070
Gm39460 9 120879783 to 120881978 2195 - lincRNA gene predicted gene, 39460
Cpgi22509 9 120881123 to 120881406 283 CpG island CpG island 22509
1700020M21Rik 9 120913774 to 120915250 1476 - lincRNA gene RIKEN cDNA 1700020M21 gene
Tssr92034 9 120919326 to 120919337 11 - TSS region transcription start site region 92034
4930593C16Rik 9 120924455 to 120930802 6347 - antisense lncRNA gene RIKEN cDNA 4930593C16 gene
Gm38502 9 120928533 to 120930209 1676 + lncRNA gene predicted gene, 38502
Tssr87754 9 120929240 to 120929251 11 + TSS region transcription start site region 87754
Tssr87755 9 120929258 to 120929268 10 + TSS region transcription start site region 87755
Cpgi22510 9 120932881 to 120934528 1647 CpG island CpG island 22510
Ctnnb1 9 120933400 to 120960507 27107 + protein coding gene catenin (cadherin associated protein), beta 1
Tssr87756 9 120933483 to 120933491 8 + TSS region transcription start site region 87756
Tssr87757 9 120933838 to 120933862 24 + TSS region transcription start site region 87757
Tssr87758 9 120933877 to 120933910 33 + TSS region transcription start site region 87758
Tssr87759 9 120950162 to 120950193 31 + TSS region transcription start site region 87759
Mir7090 9 120955086 to 120955147 61 + miRNA gene microRNA 7090
Tssr87760 9 120955160 to 120955173 13 + TSS region transcription start site region 87760
Tssr87761 9 120959552 to 120959573 21 + TSS region transcription start site region 87761
Tssr87762 9 120959832 to 120959858 26 + TSS region transcription start site region 87762
Tssr87763 9 120959961 to 120959978 17 + TSS region transcription start site region 87763
Tssr87764 9 120960006 to 120960039 33 + TSS region transcription start site region 87764
Ulk4 9 120964454 to 121286187 321733 - protein coding gene unc-51-like kinase 4
Tssr87765 9 120970725 to 120970765 40 + TSS region transcription start site region 87765
Gm34945 9 120991972 to 121000221 8249 + lncRNA gene predicted gene, 34945
Tssr92035 9 121044883 to 121044900 17 - TSS region transcription start site region 92035
D9Mit282 9 121060715 to 121060838 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 282
Tssr87766 9 121128507 to 121128511 4 + TSS region transcription start site region 87766
Gm18229 9 121194911 to 121196048 1137 + pseudogene predicted gene, 18229
Gm22987 9 121242342 to 121242587 245 + unclassified non-coding RNA gene predicted gene, 22987
Gm17157 9 121247317 to 121247664 347 + pseudogene predicted gene 17157
Gm34735 9 121267769 to 121270346 2577 - lncRNA gene predicted gene, 34735
Cpgi22511 9 121276966 to 121278083 1117 CpG island CpG island 22511
Tssr92036 9 121277160 to 121277217 57 - TSS region transcription start site region 92036
Tssr92037 9 121277676 to 121277687 11 - TSS region transcription start site region 92037
Gm34655 9 121277796 to 121279883 2087 + bidirectional promoter lncRNA gene predicted gene, 34655
Cpgi22512 9 121285663 to 121285963 300 CpG island CpG island 22512
Tssr92038 9 121285958 to 121285971 13 - TSS region transcription start site region 92038
Cpgi22513 9 121296874 to 121298147 1273 CpG island CpG island 22513
Tssr87767 9 121297496 to 121297552 56 + TSS region transcription start site region 87767
Trak1 9 121297507 to 121474919 177412 + protein coding gene trafficking protein, kinesin binding 1
Tssr87768 9 121297561 to 121297574 13 + TSS region transcription start site region 87768
Tssr87769 9 121298746 to 121298757 11 + TSS region transcription start site region 87769
Tssr87770 9 121298776 to 121298800 24 + TSS region transcription start site region 87770
Tssr87771 9 121300709 to 121300714 5 + TSS region transcription start site region 87771
Tssr92039 9 121313700 to 121313706 6 - TSS region transcription start site region 92039
Tssr92040 9 121314126 to 121314140 14 - TSS region transcription start site region 92040
Tssr87772 9 121314251 to 121314268 17 + TSS region transcription start site region 87772
Tssr87773 9 121314280 to 121314317 37 + TSS region transcription start site region 87773
Tssr87774 9 121314387 to 121314393 6 + TSS region transcription start site region 87774
Tssr92041 9 121314795 to 121314817 22 - TSS region transcription start site region 92041
C230053D17Rik 9 121319385 to 121321630 2245 + unclassified gene RIKEN cDNA C230053D17 gene
Gm47092 9 121346556 to 121348368 1812 + unclassified gene predicted gene, 47092
Tssr87775 9 121350907 to 121350909 2 + TSS region transcription start site region 87775
Tssr87776 9 121367020 to 121367042 22 + TSS region transcription start site region 87776
Tssr87777 9 121380658 to 121380678 20 + TSS region transcription start site region 87777
Cpgi22514 9 121382576 to 121382841 265 CpG island CpG island 22514
Tssr87778 9 121382789 to 121382807 18 + TSS region transcription start site region 87778
Tssr87779 9 121382859 to 121382893 34 + TSS region transcription start site region 87779
Tssr87780 9 121403414 to 121403528 114 + TSS region transcription start site region 87780
Tssr87781 9 121415952 to 121415961 9 + TSS region transcription start site region 87781
Tssr87782 9 121415969 to 121415985 16 + TSS region transcription start site region 87782
Cpgi22515 9 121443701 to 121444146 445 CpG island CpG island 22515
Cpgi22516 9 121446603 to 121446826 223 CpG island CpG island 22516
Tssr92042 9 121452469 to 121452475 6 - TSS region transcription start site region 92042
Tssr87783 9 121452832 to 121452863 31 + TSS region transcription start site region 87783
Tssr92043 9 121454659 to 121454678 19 - TSS region transcription start site region 92043
Tssr92044 9 121454739 to 121454744 5 - TSS region transcription start site region 92044
Tssr87784 9 121460230 to 121460239 9 + TSS region transcription start site region 87784
Tssr87785 9 121460252 to 121460272 20 + TSS region transcription start site region 87785
Tssr87786 9 121460280 to 121460305 25 + TSS region transcription start site region 87786
Tssr87787 9 121472461 to 121472465 4 + TSS region transcription start site region 87787
D9Mit151 9 121477874 to 121477987 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 151