Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:120028016-121138246

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cx3cr1 9 120048683 to 120068296 19613 - protein coding gene chemokine (C-X3-C motif) receptor 1
Tssr92010 9 120056322 to 120056327 5 - TSS region transcription start site region 92010
Tssr92011 9 120068263 to 120068291 28 - TSS region transcription start site region 92011
Tssr92012 9 120068292 to 120068301 9 - TSS region transcription start site region 92012
Gm33858 9 120068788 to 120070302 1514 + antisense lncRNA gene predicted gene, 33858
Tssr87704 9 120074815 to 120074826 11 + TSS region transcription start site region 87704
Tssr92013 9 120091125 to 120091153 28 - TSS region transcription start site region 92013
Tssr87705 9 120091379 to 120091427 48 + TSS region transcription start site region 87705
Tssr92014 9 120091982 to 120092014 32 - TSS region transcription start site region 92014
Tssr87706 9 120092106 to 120092121 15 + TSS region transcription start site region 87706
Ccr8 9 120092133 to 120094906 2773 + protein coding gene chemokine (C-C motif) receptor 8
Tssr87707 9 120094926 to 120094937 11 + TSS region transcription start site region 87707
Gm47050 9 120095663 to 120097838 2175 + unclassified gene predicted gene, 47050
Cpgi22492 9 120110242 to 120110933 691 CpG island CpG island 22492
Tssr87708 9 120110349 to 120110418 69 + TSS region transcription start site region 87708
Slc25a38 9 120110399 to 120124342 13943 + protein coding gene solute carrier family 25, member 38
Tssr87709 9 120110497 to 120110508 11 + TSS region transcription start site region 87709
Tssr92015 9 120110740 to 120110772 32 - TSS region transcription start site region 92015
Tssr87710 9 120114897 to 120114956 59 + TSS region transcription start site region 87710
Tssr87711 9 120114962 to 120114978 16 + TSS region transcription start site region 87711
Tssr87712 9 120114993 to 120115008 15 + TSS region transcription start site region 87712
Tssr87713 9 120116237 to 120116246 9 + TSS region transcription start site region 87713
Tssr87714 9 120116507 to 120116526 19 + TSS region transcription start site region 87714
Tssr3053 9 120120707 to 120120714 7 + TSS region transcription start site region 3053
Cpgi22493 9 120127422 to 120128367 945 CpG island CpG island 22493
Rpsa 9 120127766 to 120132369 4603 + protein coding gene ribosomal protein SA
Tssr87715 9 120127779 to 120127793 14 + TSS region transcription start site region 87715
Gm24044 9 120128780 to 120128935 155 + snoRNA gene predicted gene, 24044
Gm26448 9 120129351 to 120129553 202 + snoRNA gene predicted gene, 26448
Snora62 9 120130434 to 120130563 129 + snoRNA gene small nucleolar RNA, H/ACA box 62
Gm5922 9 120133462 to 120135371 1909 - lincRNA gene predicted gene 5922
Tssr92016 9 120135021 to 120135026 5 - TSS region transcription start site region 92016
Tssr92017 9 120135032 to 120135042 10 - TSS region transcription start site region 92017
Tssr92018 9 120135790 to 120135797 7 - TSS region transcription start site region 92018
Tssr92019 9 120135814 to 120135826 12 - TSS region transcription start site region 92019
Tssr92020 9 120135830 to 120135851 21 - TSS region transcription start site region 92020
Tssr92021 9 120135927 to 120135936 9 - TSS region transcription start site region 92021
Tssr92022 9 120136311 to 120136329 18 - TSS region transcription start site region 92022
Tssr92023 9 120136335 to 120136350 15 - TSS region transcription start site region 92023
Mobp 9 120149690 to 120181329 31639 + protein coding gene myelin-associated oligodendrocytic basic protein
Tssr87716 9 120149733 to 120149748 15 + TSS region transcription start site region 87716
Cpgi22494 9 120164019 to 120164221 202 CpG island CpG island 22494
Tssr87717 9 120168386 to 120168394 8 + TSS region transcription start site region 87717
Cpgi22495 9 120174182 to 120174531 349 CpG island CpG island 22495
Tssr87718 9 120174889 to 120174900 11 + TSS region transcription start site region 87718
Tssr87719 9 120174962 to 120174976 14 + TSS region transcription start site region 87719
Tssr87720 9 120175026 to 120175044 18 + TSS region transcription start site region 87720
Tssr87721 9 120175475 to 120175485 10 + TSS region transcription start site region 87721
Tssr87722 9 120179665 to 120179677 12 + TSS region transcription start site region 87722
Tssr87723 9 120179716 to 120179727 11 + TSS region transcription start site region 87723
Tssr87724 9 120179864 to 120179873 9 + TSS region transcription start site region 87724
Tssr87725 9 120179903 to 120179914 11 + TSS region transcription start site region 87725
Tssr87726 9 120179930 to 120179941 11 + TSS region transcription start site region 87726
Tssr87727 9 120180014 to 120180026 12 + TSS region transcription start site region 87727
Tssr87728 9 120180039 to 120180052 13 + TSS region transcription start site region 87728
Tssr87729 9 120180262 to 120180277 15 + TSS region transcription start site region 87729
Tssr87730 9 120180285 to 120180298 13 + TSS region transcription start site region 87730
Tssr92024 9 120180421 to 120180464 43 - TSS region transcription start site region 92024
Cpgi22496 9 120180654 to 120180852 198 CpG island CpG island 22496
Gm37111 9 120182564 to 120183197 633 + unclassified gene predicted gene, 37111
Cpgi22497 9 120191196 to 120191398 202 CpG island CpG island 22497
Gm38642 9 120214593 to 120257042 42449 + lncRNA gene predicted gene, 38642
Gm47059 9 120259628 to 120264358 4730 + lincRNA gene predicted gene, 47059
D9Mit18 9 120289445 to 120289624 179 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 18
Pbwg4 9 120289445 to 120289624 179 QTL postnatal body weight growth 4
Berr3 9 120289445 to 120289624 179 QTL berghei resistance locus 3
Pvacm1l 9 120289445 to 120289624 179 QTL plasma vascular cell adhesion molecule 1 levels
D9Dcr135 9 120289474 to 120289578 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 135
Dob2 9 120289624 to 86239845 -34049779 QTL dietary obesity 2
Myrip 9 120302956 to 120476101 173145 + protein coding gene myosin VIIA and Rab interacting protein
Cpgi22498 9 120303012 to 120305013 2001 CpG island CpG island 22498
Tssr87731 9 120303896 to 120303960 64 + TSS region transcription start site region 87731
Tssr87732 9 120303965 to 120304021 56 + TSS region transcription start site region 87732
Tssr92025 9 120306037 to 120306049 12 - TSS region transcription start site region 92025
Gm15566 9 120316328 to 120316917 589 + pseudogene predicted gene 15566
Gm34159 9 120344752 to 120363759 19007 - lncRNA gene predicted gene, 34159
D9Mit19 9 120362769 to 120362868 99 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 19
W10q13 9 120362868 to 63332429 -57030439 QTL weight 10 weeks QTL 13
Splq4 9 120362868 to 63332429 -57030439 QTL spleen weight QTL 4
Tailaq2 9 120362868 to 63332429 -57030439 QTL tail length adjusted QTL 2
Tssr87733 9 120384850 to 120384857 7 + TSS region transcription start site region 87733
Gm15565 9 120384911 to 120385337 426 + pseudogene predicted gene 15565
Tssr87734 9 120401917 to 120401918 1 + TSS region transcription start site region 87734
Tssr87735 9 120470341 to 120470354 13 + TSS region transcription start site region 87735
Tssr87736 9 120490156 to 120490166 10 + TSS region transcription start site region 87736
D830035M03Rik 9 120490532 to 120492547 2015 - antisense lncRNA gene RIKEN cDNA D830035M03 gene
Cpgi22499 9 120492050 to 120493335 1285 CpG island CpG island 22499
Tssr87737 9 120492501 to 120492512 11 + TSS region transcription start site region 87737
Tssr87738 9 120492604 to 120492615 11 + TSS region transcription start site region 87738
Eif1b 9 120492606 to 120495327 2721 + protein coding gene eukaryotic translation initiation factor 1B
Tssr87739 9 120492624 to 120492640 16 + TSS region transcription start site region 87739
Tssr3054 9 120492652 to 120492661 9 + TSS region transcription start site region 3054
Tssr87740 9 120492677 to 120492686 9 + TSS region transcription start site region 87740
Tssr87741 9 120492703 to 120492731 28 + TSS region transcription start site region 87741
Tssr87742 9 120492737 to 120492744 7 + TSS region transcription start site region 87742
Tssr87743 9 120521781 to 120521786 5 + TSS region transcription start site region 87743
Gm7229 9 120521813 to 120522819 1006 + pseudogene predicted gene 7229
Cpgi22500 9 120539651 to 120540070 419 CpG island CpG island 22500
Tssr87744 9 120539801 to 120539864 63 + TSS region transcription start site region 87744
Entpd3 9 120539818 to 120568327 28509 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 3
Tssr87745 9 120539876 to 120539886 10 + TSS region transcription start site region 87745
Tssr87746 9 120555585 to 120555588 3 + TSS region transcription start site region 87746
Tssr87747 9 120555599 to 120555623 24 + TSS region transcription start site region 87747
Tssr87748 9 120555638 to 120555647 9 + TSS region transcription start site region 87748
Cpgi22501 9 120571117 to 120572307 1190 CpG island CpG island 22501
Tssr92026 9 120571361 to 120571375 14 - TSS region transcription start site region 92026
Tssr92027 9 120571387 to 120571420 33 - TSS region transcription start site region 92027
Tssr87749 9 120571476 to 120571487 11 + TSS region transcription start site region 87749
Tssr87750 9 120571498 to 120571522 24 + TSS region transcription start site region 87750
Rpl14 9 120571517 to 120574653 3136 + protein coding gene ribosomal protein L14
Cpgi22502 9 120577069 to 120577849 780 CpG island CpG island 22502
5830454E08Rik 9 120577331 to 120578073 742 + lincRNA gene RIKEN cDNA 5830454E08 gene
Gm47062 9 120580135 to 120582738 2603 + pseudogene predicted gene, 47062
Cpgi22503 9 120583016 to 120583246 230 CpG island CpG island 22503
Cpgi22504 9 120602829 to 120603015 186 CpG island CpG island 22504
Gm34323 9 120603732 to 120611663 7931 + lncRNA gene predicted gene, 34323
Gm39456 9 120611654 to 120620299 8645 - lincRNA gene predicted gene, 39456
Cpgi22505 9 120619669 to 120620032 363 CpG island CpG island 22505
Tssr87751 9 120658008 to 120658024 16 + TSS region transcription start site region 87751
Cpgi22506 9 120660801 to 120661013 212 CpG island CpG island 22506
Gm39457 9 120672070 to 120675310 3240 + lncRNA gene predicted gene, 39457
Gm39458 9 120675443 to 120682465 7022 + lncRNA gene predicted gene, 39458
Tssr92028 9 120679841 to 120679846 5 - TSS region transcription start site region 92028
Gm47063 9 120705889 to 120706237 348 - unclassified gene predicted gene, 47063
Tssr92029 9 120743194 to 120743200 6 - TSS region transcription start site region 92029
Gm47064 9 120743590 to 120751143 7553 - lincRNA gene predicted gene, 47064
Gm18101 9 120754978 to 120755525 547 - pseudogene predicted gene, 18101
Tssr92030 9 120755616 to 120755644 28 - TSS region transcription start site region 92030
D9Mit121 9 120772549 to 120772675 126 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 121
Tssr92031 9 120789805 to 120789810 5 - TSS region transcription start site region 92031
Gm23624 9 120791465 to 120791785 320 - unclassified non-coding RNA gene predicted gene, 23624
Gm47066 9 120791986 to 120794882 2896 + lincRNA gene predicted gene, 47066
Tssr92032 9 120807036 to 120807039 3 - TSS region transcription start site region 92032
Cpgi22507 9 120818718 to 120818929 211 CpG island CpG island 22507
Tssr87752 9 120821109 to 120821115 6 + TSS region transcription start site region 87752
Cpgi22508 9 120833907 to 120834166 259 CpG island CpG island 22508
Gm39459 9 120834369 to 120844825 10456 + lincRNA gene predicted gene, 39459
Gm47068 9 120843445 to 120846181 2736 - lincRNA gene predicted gene, 47068
Gm47069 9 120849207 to 120853103 3896 + lincRNA gene predicted gene, 47069
Gm19385 9 120861615 to 120866756 5141 - lincRNA gene predicted gene, 19385
Tssr92033 9 120866540 to 120866549 9 - TSS region transcription start site region 92033
Tssr87753 9 120867070 to 120867096 26 + TSS region transcription start site region 87753
Gm34425 9 120869961 to 120872284 2323 + lincRNA gene predicted gene, 34425
Gm47070 9 120869984 to 120871030 1046 - lincRNA gene predicted gene, 47070
Gm39460 9 120879783 to 120881978 2195 - lincRNA gene predicted gene, 39460
Cpgi22509 9 120881123 to 120881406 283 CpG island CpG island 22509
1700020M21Rik 9 120913774 to 120915250 1476 - lincRNA gene RIKEN cDNA 1700020M21 gene
Tssr92034 9 120919326 to 120919337 11 - TSS region transcription start site region 92034
4930593C16Rik 9 120924455 to 120930802 6347 - antisense lncRNA gene RIKEN cDNA 4930593C16 gene
Gm38502 9 120928533 to 120930209 1676 + lncRNA gene predicted gene, 38502
Tssr87754 9 120929240 to 120929251 11 + TSS region transcription start site region 87754
Tssr87755 9 120929258 to 120929268 10 + TSS region transcription start site region 87755
Cpgi22510 9 120932881 to 120934528 1647 CpG island CpG island 22510
Ctnnb1 9 120933400 to 120960507 27107 + protein coding gene catenin (cadherin associated protein), beta 1
Tssr87756 9 120933483 to 120933491 8 + TSS region transcription start site region 87756
Tssr87757 9 120933838 to 120933862 24 + TSS region transcription start site region 87757
Tssr87758 9 120933877 to 120933910 33 + TSS region transcription start site region 87758
Tssr87759 9 120950162 to 120950193 31 + TSS region transcription start site region 87759
Mir7090 9 120955086 to 120955147 61 + miRNA gene microRNA 7090
Tssr87760 9 120955160 to 120955173 13 + TSS region transcription start site region 87760
Tssr87761 9 120959552 to 120959573 21 + TSS region transcription start site region 87761
Tssr87762 9 120959832 to 120959858 26 + TSS region transcription start site region 87762
Tssr87763 9 120959961 to 120959978 17 + TSS region transcription start site region 87763
Tssr87764 9 120960006 to 120960039 33 + TSS region transcription start site region 87764
Ulk4 9 120964454 to 121286187 321733 - protein coding gene unc-51-like kinase 4
Tssr87765 9 120970725 to 120970765 40 + TSS region transcription start site region 87765
Gm34945 9 120991972 to 121000221 8249 + lncRNA gene predicted gene, 34945
Tssr92035 9 121044883 to 121044900 17 - TSS region transcription start site region 92035
D9Mit282 9 121060715 to 121060838 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 282
Tssr87766 9 121128507 to 121128511 4 + TSS region transcription start site region 87766