Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:119710137-120080141

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn10a 9 119608456 to 119719322 110866 - protein coding gene sodium channel, voltage-gated, type X, alpha
Gm33701 9 119744216 to 119754451 10235 + lncRNA gene predicted gene, 33701
Scn11a 9 119753759 to 119825456 71697 - protein coding gene sodium channel, voltage-gated, type XI, alpha
Cpgi22481 9 119791927 to 119792119 192 CpG island CpG island 22481
Tssr87689 9 119796640 to 119796642 2 + TSS region transcription start site region 87689
Cpgi22482 9 119797556 to 119797791 235 CpG island CpG island 22482
Cpgi22483 9 119828488 to 119828763 275 CpG island CpG island 22483
Gm46134 9 119882946 to 119887573 4627 - lncRNA gene predicted gene, 46134
Gm2449 9 119887575 to 119894912 7337 - bidirectional promoter lncRNA gene predicted gene 2449
Cpgi22484 9 119894554 to 119895790 1236 CpG island CpG island 22484
Tssr87690 9 119894876 to 119894913 37 + TSS region transcription start site region 87690
Wdr48 9 119894895 to 119926586 31691 + protein coding gene WD repeat domain 48
Tssr87691 9 119895131 to 119895148 17 + TSS region transcription start site region 87691
Tssr91989 9 119895137 to 119895141 4 - TSS region transcription start site region 91989
Tssr87692 9 119895155 to 119895211 56 + TSS region transcription start site region 87692
Gorasp1 9 119925673 to 119937558 11885 - protein coding gene golgi reassembly stacking protein 1
D9Mit216 9 119934993 to 119935122 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 216
Cpgi22485 9 119937345 to 119937859 514 CpG island CpG island 22485
Tssr91990 9 119937514 to 119937558 44 - TSS region transcription start site region 91990
Ttc21a 9 119937606 to 119967793 30187 + protein coding gene tetratricopeptide repeat domain 21A
Tssr87693 9 119937612 to 119937651 39 + TSS region transcription start site region 87693
Tssr87694 9 119937654 to 119937705 51 + TSS region transcription start site region 87694
Cpgi22486 9 119963011 to 119963317 306 CpG island CpG island 22486
Csrnp1 9 119971163 to 119984658 13495 - protein coding gene cysteine-serine-rich nuclear protein 1
Cpgi22487 9 119974119 to 119974446 327 CpG island CpG island 22487
Tssr91991 9 119976053 to 119976080 27 - TSS region transcription start site region 91991
Tssr91992 9 119977612 to 119977624 12 - TSS region transcription start site region 91992
Tssr91993 9 119978267 to 119978277 10 - TSS region transcription start site region 91993
Tssr91994 9 119978288 to 119978300 12 - TSS region transcription start site region 91994
Tssr91995 9 119980471 to 119980475 4 - TSS region transcription start site region 91995
Tssr91996 9 119981364 to 119981379 15 - TSS region transcription start site region 91996
Tssr87695 9 119981645 to 119981655 10 + TSS region transcription start site region 87695
Cpgi22488 9 119982657 to 119984445 1788 CpG island CpG island 22488
Tssr87696 9 119982732 to 119982744 12 + TSS region transcription start site region 87696
Tssr91997 9 119982860 to 119982869 9 - TSS region transcription start site region 91997
Tssr91998 9 119982981 to 119983003 22 - TSS region transcription start site region 91998
Tssr91999 9 119983005 to 119983040 35 - TSS region transcription start site region 91999
Tssr87697 9 119983124 to 119983131 7 + TSS region transcription start site region 87697
Tssr87698 9 119983133 to 119983168 35 + TSS region transcription start site region 87698
1700019L13Rik 9 119983146 to 119988092 4946 + antisense lncRNA gene RIKEN cDNA 1700019L13 gene
Tssr92000 9 119983733 to 119983748 15 - TSS region transcription start site region 92000
Tssr92001 9 119983762 to 119983780 18 - TSS region transcription start site region 92001
Tssr87699 9 119983908 to 119983974 66 + TSS region transcription start site region 87699
Tssr87700 9 119983976 to 119983987 11 + TSS region transcription start site region 87700
Cpgi22489 9 119984515 to 119984713 198 CpG island CpG island 22489
Tssr92002 9 119984624 to 119984629 5 - TSS region transcription start site region 92002
Tssr92003 9 119984664 to 119984684 20 - TSS region transcription start site region 92003
Gm33800 9 119985406 to 120012150 26744 + lncRNA gene predicted gene, 33800
Cpgi22490 9 120002119 to 120002324 205 CpG island CpG island 22490
Tssr87701 9 120002345 to 120002357 12 + TSS region transcription start site region 87701
Tssr87702 9 120002372 to 120002386 14 + TSS region transcription start site region 87702
Gm47043 9 120004037 to 120005106 1069 + lincRNA gene predicted gene, 47043
Tssr3052 9 120004842 to 120004853 11 + TSS region transcription start site region 3052
Tssr92004 9 120009184 to 120009190 6 - TSS region transcription start site region 92004
Gm49427 9 120009805 to 120011448 1643 + lincRNA gene predicted gene, 49427
Cpgi22491 9 120010924 to 120011680 756 CpG island CpG island 22491
Tssr92005 9 120011191 to 120011233 42 - TSS region transcription start site region 92005
Tssr92006 9 120012757 to 120012770 13 - TSS region transcription start site region 92006
Tssr92007 9 120012836 to 120012846 10 - TSS region transcription start site region 92007
Tssr92008 9 120012860 to 120012879 19 - TSS region transcription start site region 92008
Tssr87703 9 120013042 to 120013077 35 + TSS region transcription start site region 87703
Xirp1 9 120013755 to 120023598 9843 - protein coding gene xin actin-binding repeat containing 1
Tssr92009 9 120023558 to 120023574 16 - TSS region transcription start site region 92009
Cx3cr1 9 120048683 to 120068296 19613 - protein coding gene chemokine (C-X3-C motif) receptor 1
Tssr92010 9 120056322 to 120056327 5 - TSS region transcription start site region 92010
Tssr92011 9 120068263 to 120068291 28 - TSS region transcription start site region 92011
Tssr92012 9 120068292 to 120068301 9 - TSS region transcription start site region 92012
Gm33858 9 120068788 to 120070302 1514 + antisense lncRNA gene predicted gene, 33858
Tssr87704 9 120074815 to 120074826 11 + TSS region transcription start site region 87704