Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:119601927-119982119

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn10a 9 119608456 to 119719322 110866 - protein coding gene sodium channel, voltage-gated, type X, alpha
Tssr3051 9 119691368 to 119691387 19 + TSS region transcription start site region 3051
Gm33701 9 119744216 to 119754451 10235 + lncRNA gene predicted gene, 33701
Scn11a 9 119753759 to 119825456 71697 - protein coding gene sodium channel, voltage-gated, type XI, alpha
Cpgi22481 9 119791927 to 119792119 192 CpG island CpG island 22481
Tssr87689 9 119796640 to 119796642 2 + TSS region transcription start site region 87689
Cpgi22482 9 119797556 to 119797791 235 CpG island CpG island 22482
Cpgi22483 9 119828488 to 119828763 275 CpG island CpG island 22483
Gm46134 9 119882946 to 119887573 4627 - lncRNA gene predicted gene, 46134
Gm2449 9 119887575 to 119894912 7337 - bidirectional promoter lncRNA gene predicted gene 2449
Cpgi22484 9 119894554 to 119895790 1236 CpG island CpG island 22484
Tssr87690 9 119894876 to 119894913 37 + TSS region transcription start site region 87690
Wdr48 9 119894895 to 119926586 31691 + protein coding gene WD repeat domain 48
Tssr87691 9 119895131 to 119895148 17 + TSS region transcription start site region 87691
Tssr91989 9 119895137 to 119895141 4 - TSS region transcription start site region 91989
Tssr87692 9 119895155 to 119895211 56 + TSS region transcription start site region 87692
Gorasp1 9 119925673 to 119937558 11885 - protein coding gene golgi reassembly stacking protein 1
D9Mit216 9 119934993 to 119935122 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 216
Cpgi22485 9 119937345 to 119937859 514 CpG island CpG island 22485
Tssr91990 9 119937514 to 119937558 44 - TSS region transcription start site region 91990
Ttc21a 9 119937606 to 119967793 30187 + protein coding gene tetratricopeptide repeat domain 21A
Tssr87693 9 119937612 to 119937651 39 + TSS region transcription start site region 87693
Tssr87694 9 119937654 to 119937705 51 + TSS region transcription start site region 87694
Cpgi22486 9 119963011 to 119963317 306 CpG island CpG island 22486
Csrnp1 9 119971163 to 119984658 13495 - protein coding gene cysteine-serine-rich nuclear protein 1
Cpgi22487 9 119974119 to 119974446 327 CpG island CpG island 22487
Tssr91991 9 119976053 to 119976080 27 - TSS region transcription start site region 91991
Tssr91992 9 119977612 to 119977624 12 - TSS region transcription start site region 91992
Tssr91993 9 119978267 to 119978277 10 - TSS region transcription start site region 91993
Tssr91994 9 119978288 to 119978300 12 - TSS region transcription start site region 91994
Tssr91995 9 119980471 to 119980475 4 - TSS region transcription start site region 91995
Tssr91996 9 119981364 to 119981379 15 - TSS region transcription start site region 91996
Tssr87695 9 119981645 to 119981655 10 + TSS region transcription start site region 87695