Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:119353456-119974322

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22473 9 119357343 to 119358187 844 CpG island CpG island 22473
Xylb 9 119357381 to 119393797 36416 + protein coding gene xylulokinase homolog (H. influenzae)
Tssr87678 9 119357543 to 119357564 21 + TSS region transcription start site region 87678
Tssr87679 9 119357574 to 119357604 30 + TSS region transcription start site region 87679
Tssr87680 9 119392021 to 119392034 13 + TSS region transcription start site region 87680
Tssr87681 9 119392235 to 119392265 30 + TSS region transcription start site region 87681
Cpgi22474 9 119401602 to 119403644 2042 CpG island CpG island 22474
Tssr87682 9 119402081 to 119402153 72 + TSS region transcription start site region 87682
Acvr2b 9 119402118 to 119434995 32877 + protein coding gene activin receptor IIB
Tssr87683 9 119402156 to 119402225 69 + TSS region transcription start site region 87683
Tssr87684 9 119402226 to 119402269 43 + TSS region transcription start site region 87684
Tssr91983 9 119403475 to 119403486 11 - TSS region transcription start site region 91983
Gm47320 9 119405108 to 119409016 3908 - antisense lncRNA gene predicted gene, 47320
Tssr87685 9 119408791 to 119408795 4 + TSS region transcription start site region 87685
Tssr87686 9 119434754 to 119434758 4 + TSS region transcription start site region 87686
4930516B21Rik 9 119440278 to 119444830 4552 - lincRNA gene RIKEN cDNA 4930516B21 gene
Tssr87687 9 119441553 to 119441559 6 + TSS region transcription start site region 87687
Cpgi22475 9 119444671 to 119445576 905 CpG island CpG island 22475
Exog 9 119444943 to 119465517 20574 + protein coding gene endo/exonuclease (5'-3'), endonuclease G-like
Tssr87688 9 119444952 to 119444982 30 + TSS region transcription start site region 87688
Scn5a 9 119483408 to 119579016 95608 - protein coding gene sodium channel, voltage-gated, type V, alpha
D9Mit82 9 119496744 to 119496894 150 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 82
D9Dcr134 9 119496776 to 119496879 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 134
Tssr91984 9 119510805 to 119510809 4 - TSS region transcription start site region 91984
Cpgi22476 9 119517425 to 119517687 262 CpG island CpG island 22476
Cpgi22477 9 119519198 to 119519436 238 CpG island CpG island 22477
Tssr91985 9 119564692 to 119564705 13 - TSS region transcription start site region 91985
Tssr91986 9 119564747 to 119564756 9 - TSS region transcription start site region 91986
Cpgi22478 9 119578060 to 119579591 1531 CpG island CpG island 22478
Tssr91987 9 119578981 to 119579031 50 - TSS region transcription start site region 91987
Tssr91988 9 119579040 to 119579051 11 - TSS region transcription start site region 91988
Cpgi22479 9 119580295 to 119580468 173 CpG island CpG island 22479
Cpgi22480 9 119589019 to 119589293 274 CpG island CpG island 22480
Scn10a 9 119608456 to 119719322 110866 - protein coding gene sodium channel, voltage-gated, type X, alpha
Tssr3051 9 119691368 to 119691387 19 + TSS region transcription start site region 3051
Gm33701 9 119744216 to 119754451 10235 + lncRNA gene predicted gene, 33701
Scn11a 9 119753759 to 119825456 71697 - protein coding gene sodium channel, voltage-gated, type XI, alpha
Cpgi22481 9 119791927 to 119792119 192 CpG island CpG island 22481
Tssr87689 9 119796640 to 119796642 2 + TSS region transcription start site region 87689
Cpgi22482 9 119797556 to 119797791 235 CpG island CpG island 22482
Cpgi22483 9 119828488 to 119828763 275 CpG island CpG island 22483
Gm46134 9 119882946 to 119887573 4627 - lncRNA gene predicted gene, 46134
Gm2449 9 119887575 to 119894912 7337 - bidirectional promoter lncRNA gene predicted gene 2449
Cpgi22484 9 119894554 to 119895790 1236 CpG island CpG island 22484
Tssr87690 9 119894876 to 119894913 37 + TSS region transcription start site region 87690
Wdr48 9 119894895 to 119926586 31691 + protein coding gene WD repeat domain 48
Tssr87691 9 119895131 to 119895148 17 + TSS region transcription start site region 87691
Tssr91989 9 119895137 to 119895141 4 - TSS region transcription start site region 91989
Tssr87692 9 119895155 to 119895211 56 + TSS region transcription start site region 87692
Gorasp1 9 119925673 to 119937558 11885 - protein coding gene golgi reassembly stacking protein 1
D9Mit216 9 119934993 to 119935122 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 216
Cpgi22485 9 119937345 to 119937859 514 CpG island CpG island 22485
Tssr91990 9 119937514 to 119937558 44 - TSS region transcription start site region 91990
Ttc21a 9 119937606 to 119967793 30187 + protein coding gene tetratricopeptide repeat domain 21A
Tssr87693 9 119937612 to 119937651 39 + TSS region transcription start site region 87693
Tssr87694 9 119937654 to 119937705 51 + TSS region transcription start site region 87694
Cpgi22486 9 119963011 to 119963317 306 CpG island CpG island 22486
Csrnp1 9 119971163 to 119984658 13495 - protein coding gene cysteine-serine-rich nuclear protein 1
Cpgi22487 9 119974119 to 119974446 327 CpG island CpG island 22487