Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:118894625-119344658

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20d 9 108915010 to 118915010 10000000 QTL adiposity 20d
Itga9 9 118606709 to 118901003 294294 + protein coding gene integrin alpha 9
Gm2415 9 118902618 to 118906018 3400 - antisense lncRNA gene predicted gene 2415
Gm16295 9 118924873 to 118925777 904 + lincRNA gene predicted gene 16295
Cpgi22463 9 118925018 to 118927467 2449 CpG island CpG island 22463
Tssr91961 9 118925374 to 118925442 68 - TSS region transcription start site region 91961
Ctdspl 9 118926453 to 119043998 117545 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Tssr87657 9 118926498 to 118926568 70 + TSS region transcription start site region 87657
Tssr87658 9 118926638 to 118926654 16 + TSS region transcription start site region 87658
Tssr3049 9 118926663 to 118926674 11 + TSS region transcription start site region 3049
D9Mit120 9 118937878 to 118938021 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 120
Pymr 9 118938021 to 89977005 -28961016 QTL Plasmodium yoelli malaria resistance
Tssr87659 9 118947327 to 118947330 3 + TSS region transcription start site region 87659
Tssr87660 9 118959738 to 118959742 4 + TSS region transcription start site region 87660
Tgq2 9 119000187 to 119000307 120 QTL triglyceride QTL 2
Obq18 9 119000187 to 119000307 120 QTL obesity QTL 18
D9Mit281 9 119000187 to 119000307 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281
D9Mit281.1 9 119000287 to 119000410 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281.1
Gm33645 9 119022850 to 119026266 3416 - lncRNA gene predicted gene, 33645
Mir26a-1 9 119031796 to 119031885 89 + miRNA gene microRNA 26a-1
Tssr87661 9 119035018 to 119035020 2 + TSS region transcription start site region 87661
Tssr87662 9 119037661 to 119037663 2 + TSS region transcription start site region 87662
Tssr87663 9 119052770 to 119052795 25 + TSS region transcription start site region 87663
Vill 9 119052778 to 119071525 18747 + protein coding gene villin-like
Cpgi22464 9 119052862 to 119053253 391 CpG island CpG island 22464
Tssr87664 9 119052863 to 119052893 30 + TSS region transcription start site region 87664
Tssr87665 9 119063429 to 119063467 38 + TSS region transcription start site region 87665
Tssr87666 9 119063468 to 119063492 24 + TSS region transcription start site region 87666
Plcd1 9 119071527 to 119093502 21975 - protein coding gene phospholipase C, delta 1
Cpgi22465 9 119075779 to 119076380 601 CpG island CpG island 22465
Cpgi22466 9 119088023 to 119088250 227 CpG island CpG island 22466
Tssr91962 9 119088207 to 119088280 73 - TSS region transcription start site region 91962
Tssr91963 9 119089317 to 119089321 4 - TSS region transcription start site region 91963
Cpgi22467 9 119092833 to 119093915 1082 CpG island CpG island 22467
Tssr91964 9 119093468 to 119093502 34 - TSS region transcription start site region 91964
Cpgi22468 9 119102301 to 119103117 816 CpG island CpG island 22468
Tssr87667 9 119102463 to 119102530 67 + TSS region transcription start site region 87667
Dlec1 9 119102478 to 119148246 45768 + protein coding gene deleted in lung and esophageal cancer 1
Tssr87668 9 119119625 to 119119658 33 + TSS region transcription start site region 87668
Tssr3050 9 119119660 to 119119666 6 + TSS region transcription start site region 3050
Tssr87669 9 119133587 to 119133615 28 + TSS region transcription start site region 87669
Acaa1b 9 119148043 to 119157093 9050 - protein coding gene acetyl-Coenzyme A acyltransferase 1B
Cpgi22469 9 119156388 to 119157132 744 CpG island CpG island 22469
Tssr91965 9 119157014 to 119157029 15 - TSS region transcription start site region 91965
Tssr91966 9 119157055 to 119157075 20 - TSS region transcription start site region 91966
Gm47289 9 119159161 to 119161669 2508 + protein coding gene predicted gene, 47289
Tssr87670 9 119162620 to 119162643 23 + TSS region transcription start site region 87670
Gm10608 9 119162730 to 119163405 675 + pseudogene predicted gene 10608
Slc22a14 9 119169453 to 119190430 20977 - protein coding gene solute carrier family 22 (organic cation transporter), member 14
Tssr91967 9 119184126 to 119184153 27 - TSS region transcription start site region 91967
Tssr91968 9 119190233 to 119190236 3 - TSS region transcription start site region 91968
Tssr91969 9 119190254 to 119190258 4 - TSS region transcription start site region 91969
Tssr91970 9 119190265 to 119190266 1 - TSS region transcription start site region 91970
Tssr91971 9 119190283 to 119190290 7 - TSS region transcription start site region 91971
Tssr91972 9 119190313 to 119190318 5 - TSS region transcription start site region 91972
Tssr91973 9 119190365 to 119190374 9 - TSS region transcription start site region 91973
Tssr91974 9 119190383 to 119190410 27 - TSS region transcription start site region 91974
Tssr91975 9 119190414 to 119190420 6 - TSS region transcription start site region 91975
Slc22a13 9 119192974 to 119209098 16124 - protein coding gene solute carrier family 22 (organic cation transporter), member 13
Tssr91976 9 119209096 to 119209109 13 - TSS region transcription start site region 91976
Slc22a13b 9 119220491 to 119231692 11201 - polymorphic pseudogene solute carrier family 22 (organic cation transporter), member 13b
Oxsr1 9 119238432 to 119322427 83995 - protein coding gene oxidative-stress responsive 1
Gm22729 9 119306629 to 119306757 128 - snoRNA gene predicted gene, 22729
Cpgi22470 9 119321545 to 119323392 1847 CpG island CpG island 22470
Tssr91977 9 119322330 to 119322358 28 - TSS region transcription start site region 91977
Tssr91978 9 119322376 to 119322417 41 - TSS region transcription start site region 91978
Tssr91979 9 119322421 to 119322449 28 - TSS region transcription start site region 91979
Tssr87671 9 119323047 to 119323064 17 + TSS region transcription start site region 87671
Tssr87672 9 119323139 to 119323153 14 + TSS region transcription start site region 87672
Myd88 9 119335988 to 119340040 4052 - protein coding gene myeloid differentiation primary response gene 88
Cpgi22471 9 119339527 to 119340210 683 CpG island CpG island 22471
Tssr87673 9 119339648 to 119339661 13 + TSS region transcription start site region 87673
Tssr91980 9 119339849 to 119339860 11 - TSS region transcription start site region 91980
Tssr91981 9 119339989 to 119340035 46 - TSS region transcription start site region 91981
Cpgi22472 9 119340898 to 119342030 1132 CpG island CpG island 22472
Acaa1a 9 119341052 to 119350296 9244 + protein coding gene acetyl-Coenzyme A acyltransferase 1A
Tssr87674 9 119341348 to 119341363 15 + TSS region transcription start site region 87674
Tssr87675 9 119341366 to 119341409 43 + TSS region transcription start site region 87675
Tssr91982 9 119341390 to 119341420 30 - TSS region transcription start site region 91982
Tssr87676 9 119341419 to 119341486 67 + TSS region transcription start site region 87676
Tssr87677 9 119341487 to 119341499 12 + TSS region transcription start site region 87677