Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:118691071-119077222

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20d 9 108915010 to 118915010 10000000 QTL adiposity 20d
Itga9 9 118606709 to 118901003 294294 + protein coding gene integrin alpha 9
Tssr91958 9 118701860 to 118701869 9 - TSS region transcription start site region 91958
Tssr87646 9 118703348 to 118703359 11 + TSS region transcription start site region 87646
Tssr87647 9 118703375 to 118703385 10 + TSS region transcription start site region 87647
Tssr87648 9 118703391 to 118703404 13 + TSS region transcription start site region 87648
Tssr87649 9 118703435 to 118703446 11 + TSS region transcription start site region 87649
Tssr87650 9 118703477 to 118703488 11 + TSS region transcription start site region 87650
Tssr87651 9 118703495 to 118703512 17 + TSS region transcription start site region 87651
Tssr87652 9 118703772 to 118703789 17 + TSS region transcription start site region 87652
D9Dcr132 9 118715110 to 118715209 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 132
D9Dcr133 9 118752963 to 118753063 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 133
Tssr87653 9 118776504 to 118776507 3 + TSS region transcription start site region 87653
D9Mit280 9 118788668 to 118788790 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 280
Tssr87654 9 118835492 to 118835506 14 + TSS region transcription start site region 87654
Tssr87655 9 118835521 to 118835558 37 + TSS region transcription start site region 87655
Gm10157 9 118837613 to 118837955 342 - pseudogene predicted gene 10157
Tssr91959 9 118838090 to 118838100 10 - TSS region transcription start site region 91959
Gm39454 9 118843879 to 118851834 7955 - lncRNA gene predicted gene, 39454
Cpgi22462 9 118871947 to 118872159 212 CpG island CpG island 22462
Tssr87656 9 118877132 to 118877145 13 + TSS region transcription start site region 87656
Tssr91960 9 118887216 to 118887229 13 - TSS region transcription start site region 91960
Gm2415 9 118902618 to 118906018 3400 - antisense lncRNA gene predicted gene 2415
Gm16295 9 118924873 to 118925777 904 + lincRNA gene predicted gene 16295
Cpgi22463 9 118925018 to 118927467 2449 CpG island CpG island 22463
Tssr91961 9 118925374 to 118925442 68 - TSS region transcription start site region 91961
Ctdspl 9 118926453 to 119043998 117545 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Tssr87657 9 118926498 to 118926568 70 + TSS region transcription start site region 87657
Tssr87658 9 118926638 to 118926654 16 + TSS region transcription start site region 87658
Tssr3049 9 118926663 to 118926674 11 + TSS region transcription start site region 3049
D9Mit120 9 118937878 to 118938021 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 120
Pymr 9 118938021 to 89977005 -28961016 QTL Plasmodium yoelli malaria resistance
Tssr87659 9 118947327 to 118947330 3 + TSS region transcription start site region 87659
Tssr87660 9 118959738 to 118959742 4 + TSS region transcription start site region 87660
Obq18 9 119000187 to 119000307 120 QTL obesity QTL 18
Tgq2 9 119000187 to 119000307 120 QTL triglyceride QTL 2
D9Mit281 9 119000187 to 119000307 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281
D9Mit281.1 9 119000287 to 119000410 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281.1
Gm33645 9 119022850 to 119026266 3416 - lncRNA gene predicted gene, 33645
Mir26a-1 9 119031796 to 119031885 89 + miRNA gene microRNA 26a-1
Tssr87661 9 119035018 to 119035020 2 + TSS region transcription start site region 87661
Tssr87662 9 119037661 to 119037663 2 + TSS region transcription start site region 87662
Tssr87663 9 119052770 to 119052795 25 + TSS region transcription start site region 87663
Vill 9 119052778 to 119071525 18747 + protein coding gene villin-like
Cpgi22464 9 119052862 to 119053253 391 CpG island CpG island 22464
Tssr87664 9 119052863 to 119052893 30 + TSS region transcription start site region 87664
Tssr87665 9 119063429 to 119063467 38 + TSS region transcription start site region 87665
Tssr87666 9 119063468 to 119063492 24 + TSS region transcription start site region 87666
Plcd1 9 119071527 to 119093502 21975 - protein coding gene phospholipase C, delta 1
Cpgi22465 9 119075779 to 119076380 601 CpG island CpG island 22465