Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:118084097-118726099

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cmc1 9 118064522 to 118150177 85655 - protein coding gene COX assembly mitochondrial protein 1
Tssr91950 9 118108949 to 118108951 2 - TSS region transcription start site region 91950
Cpgi22452 9 118149786 to 118150397 611 CpG island CpG island 22452
Tssr91951 9 118150041 to 118150077 36 - TSS region transcription start site region 91951
Tssr91952 9 118150079 to 118150106 27 - TSS region transcription start site region 91952
Tssr91953 9 118150171 to 118150182 11 - TSS region transcription start site region 91953
Tssr91954 9 118150201 to 118150208 7 - TSS region transcription start site region 91954
Gm17399 9 118150231 to 118170376 20145 + lincRNA gene predicted gene, 17399
D9Dcr131 9 118218880 to 118218975 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 131
Tssr87626 9 118284382 to 118284393 11 + TSS region transcription start site region 87626
Gm22198 9 118287786 to 118288092 306 + unclassified non-coding RNA gene predicted gene, 22198
Gm33088 9 118344032 to 118346189 2157 + lncRNA gene predicted gene, 33088
Cpgi22453 9 118389514 to 118389803 289 CpG island CpG island 22453
2610509F24Rik 9 118402465 to 118403302 837 - unclassified gene RIKEN cDNA 2610509F24 gene
Platr11 9 118404097 to 118406099 2002 - lincRNA gene pluripotency associated transcript 11
Tssr91955 9 118406112 to 118406160 48 - TSS region transcription start site region 91955
D9Mit293 9 118425504 to 118425617 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 293
4933432G23Rik 9 118429839 to 118437048 7209 + lincRNA gene RIKEN cDNA 4933432G23 gene
Gm33285 9 118441280 to 118445976 4696 + lncRNA gene predicted gene, 33285
Gm33408 9 118447241 to 118478648 31407 - lncRNA gene predicted gene, 33408
Gm22479 9 118466984 to 118467064 80 - snRNA gene predicted gene, 22479
Tssr91956 9 118467061 to 118467065 4 - TSS region transcription start site region 91956
Cpgi22454 9 118476658 to 118477155 497 CpG island CpG island 22454
Cpgi22455 9 118477448 to 118477941 493 CpG island CpG island 22455
Tssr87627 9 118478182 to 118478199 17 + TSS region transcription start site region 87627
Eomes 9 118478212 to 118486132 7920 + protein coding gene eomesodermin
Cpgi22456 9 118478408 to 118479862 1454 CpG island CpG island 22456
Tssr87628 9 118478447 to 118478451 4 + TSS region transcription start site region 87628
Tssr87629 9 118478624 to 118478635 11 + TSS region transcription start site region 87629
Tssr91957 9 118478722 to 118478736 14 - TSS region transcription start site region 91957
Tssr87630 9 118478815 to 118478824 9 + TSS region transcription start site region 87630
Tssr87631 9 118478851 to 118478866 15 + TSS region transcription start site region 87631
Tssr87632 9 118480578 to 118480591 13 + TSS region transcription start site region 87632
Tssr87633 9 118481265 to 118481287 22 + TSS region transcription start site region 87633
Tssr87634 9 118485145 to 118485170 25 + TSS region transcription start site region 87634
Gm33460 9 118486244 to 118489779 3535 - antisense lncRNA gene predicted gene, 33460
Cpgi22457 9 118486500 to 118486988 488 CpG island CpG island 22457
Cpgi22458 9 118488081 to 118488383 302 CpG island CpG island 22458
Cpgi22459 9 118505993 to 118507272 1279 CpG island CpG island 22459
Tssr87635 9 118506226 to 118506289 63 + TSS region transcription start site region 87635
Golga4 9 118506267 to 118582519 76252 + protein coding gene golgi autoantigen, golgin subfamily a, 4
Tssr87636 9 118512912 to 118512934 22 + TSS region transcription start site region 87636
Tssr87637 9 118519576 to 118519580 4 + TSS region transcription start site region 87637
Tssr87638 9 118538875 to 118538905 30 + TSS region transcription start site region 87638
Tssr87639 9 118556549 to 118556567 18 + TSS region transcription start site region 87639
Tssr87640 9 118558028 to 118558041 13 + TSS region transcription start site region 87640
Tssr87641 9 118558436 to 118558439 3 + TSS region transcription start site region 87641
Tssr87642 9 118560354 to 118560372 18 + TSS region transcription start site region 87642
Tssr87643 9 118570515 to 118570522 7 + TSS region transcription start site region 87643
Gm18935 9 118571608 to 118572271 663 - pseudogene predicted gene, 18935
Gm45897 9 118584853 to 118590195 5342 - lincRNA gene predicted gene 45897
Cpgi22460 9 118606276 to 118607525 1249 CpG island CpG island 22460
Tssr87644 9 118606687 to 118606751 64 + TSS region transcription start site region 87644
Itga9 9 118606709 to 118901003 294294 + protein coding gene integrin alpha 9
Tssr87645 9 118629183 to 118629185 2 + TSS region transcription start site region 87645
Cpgi22461 9 118674949 to 118675120 171 CpG island CpG island 22461
Tssr91958 9 118701860 to 118701869 9 - TSS region transcription start site region 91958
Tssr87646 9 118703348 to 118703359 11 + TSS region transcription start site region 87646
Tssr87647 9 118703375 to 118703385 10 + TSS region transcription start site region 87647
Tssr87648 9 118703391 to 118703404 13 + TSS region transcription start site region 87648
Tssr87649 9 118703435 to 118703446 11 + TSS region transcription start site region 87649
Tssr87650 9 118703477 to 118703488 11 + TSS region transcription start site region 87650
Tssr87651 9 118703495 to 118703512 17 + TSS region transcription start site region 87651
Tssr87652 9 118703772 to 118703789 17 + TSS region transcription start site region 87652
D9Dcr132 9 118715110 to 118715209 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 132