Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:117047256-118757489

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbms3 9 116572746 to 117629913 1057167 - protein coding gene RNA binding motif, single stranded interacting protein
Gm18489 9 117059158 to 117059708 550 + pseudogene predicted gene, 18489
Gm20397 9 117065527 to 117065888 361 + pseudogene predicted gene 20397
Tssr91937 9 117093284 to 117093297 13 - TSS region transcription start site region 91937
D9Jpk2 9 117134460 to 117134575 115 DNA segment DNA segment, Chr 9, Japan, Kominami 2
Gm39452 9 117178329 to 117181558 3229 - lncRNA gene predicted gene, 39452
D9Dcr130 9 117193422 to 117193517 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 130
Tssr91938 9 117251898 to 117251920 22 - TSS region transcription start site region 91938
Tssr91939 9 117252065 to 117252082 17 - TSS region transcription start site region 91939
Tssr91940 9 117252111 to 117252125 14 - TSS region transcription start site region 91940
Tssr91941 9 117252126 to 117252183 57 - TSS region transcription start site region 91941
Tssr91942 9 117252192 to 117252216 24 - TSS region transcription start site region 91942
Tssr91943 9 117252345 to 117252383 38 - TSS region transcription start site region 91943
Tssr91944 9 117252450 to 117252489 39 - TSS region transcription start site region 91944
Tssr87601 9 117252521 to 117252559 38 + TSS region transcription start site region 87601
Gm17396 9 117252536 to 117254696 2160 + unclassified non-coding RNA gene predicted gene, 17396
Tssr91945 9 117252665 to 117252724 59 - TSS region transcription start site region 91945
Gm39451 9 117315988 to 117352371 36383 + lncRNA gene predicted gene, 39451
Tssr87602 9 117317523 to 117317546 23 + TSS region transcription start site region 87602
D9Mit56 9 117346072 to 117346177 105 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 56
Gm20396 9 117402979 to 117404342 1363 + pseudogene predicted gene 20396
D9Mit201 9 117436166 to 117436273 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 201
Tssr91946 9 117588673 to 117588675 2 - TSS region transcription start site region 91946
Gm45881 9 117708192 to 117872584 164392 - lincRNA gene predicted gene 45881
Gm39450 9 117722791 to 117725284 2493 + lncRNA gene predicted gene, 39450
Tssr87603 9 117856910 to 117856913 3 + TSS region transcription start site region 87603
Tssr87604 9 117859979 to 117859983 4 + TSS region transcription start site region 87604
Cpgi22449 9 117871925 to 117873451 1526 CpG island CpG island 22449
Tssr87605 9 117872223 to 117872236 13 + TSS region transcription start site region 87605
Tssr91947 9 117872545 to 117872602 57 - TSS region transcription start site region 91947
Gm26614 9 117873144 to 117881202 8058 + lincRNA gene predicted gene, 26614
Zcwpw2 9 117876000 to 118040259 164259 - pseudogene zinc finger, CW type with PWWP domain 2
Cpgi22450 9 117902256 to 117902489 233 CpG island CpG island 22450
Gm22008 9 117999336 to 117999430 94 + miRNA gene predicted gene, 22008
Cpgi22451 9 118040020 to 118041372 1352 CpG island CpG island 22451
Tssr91948 9 118040313 to 118040333 20 - TSS region transcription start site region 91948
Tssr91949 9 118040375 to 118040391 16 - TSS region transcription start site region 91949
Tssr87606 9 118040475 to 118040494 19 + TSS region transcription start site region 87606
Tssr87607 9 118040509 to 118040566 57 + TSS region transcription start site region 87607
Azi2 9 118040522 to 118069798 29276 + protein coding gene 5-azacytidine induced gene 2
Tssr87608 9 118040576 to 118040583 7 + TSS region transcription start site region 87608
Tssr87609 9 118040594 to 118040604 10 + TSS region transcription start site region 87609
Tssr87610 9 118040608 to 118040615 7 + TSS region transcription start site region 87610
Tssr87611 9 118040623 to 118040630 7 + TSS region transcription start site region 87611
Tssr87612 9 118040658 to 118040669 11 + TSS region transcription start site region 87612
Tssr87613 9 118041158 to 118041162 4 + TSS region transcription start site region 87613
Tssr87614 9 118043882 to 118043920 38 + TSS region transcription start site region 87614
Tssr87615 9 118047388 to 118047398 10 + TSS region transcription start site region 87615
Tssr87616 9 118049709 to 118049725 16 + TSS region transcription start site region 87616
Tssr87617 9 118049762 to 118049773 11 + TSS region transcription start site region 87617
Tssr87618 9 118049990 to 118050004 14 + TSS region transcription start site region 87618
Tssr87619 9 118050058 to 118050101 43 + TSS region transcription start site region 87619
Tssr87620 9 118050226 to 118050231 5 + TSS region transcription start site region 87620
Tssr87621 9 118052449 to 118052458 9 + TSS region transcription start site region 87621
Tssr87622 9 118054948 to 118054952 4 + TSS region transcription start site region 87622
Tssr87623 9 118059090 to 118059134 44 + TSS region transcription start site region 87623
Tssr87624 9 118059448 to 118059466 18 + TSS region transcription start site region 87624
Lcho1 9 118060861 to 118061002 141 QTL liver cholesterol 1
D9Mit279 9 118060861 to 118061002 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 279
Cmc1 9 118064522 to 118150177 85655 - protein coding gene COX assembly mitochondrial protein 1
Tssr87625 9 118079271 to 118079275 4 + TSS region transcription start site region 87625
Tssr91950 9 118108949 to 118108951 2 - TSS region transcription start site region 91950
Cpgi22452 9 118149786 to 118150397 611 CpG island CpG island 22452
Tssr91951 9 118150041 to 118150077 36 - TSS region transcription start site region 91951
Tssr91952 9 118150079 to 118150106 27 - TSS region transcription start site region 91952
Tssr91953 9 118150171 to 118150182 11 - TSS region transcription start site region 91953
Tssr91954 9 118150201 to 118150208 7 - TSS region transcription start site region 91954
Gm17399 9 118150231 to 118170376 20145 + lincRNA gene predicted gene, 17399
D9Dcr131 9 118218880 to 118218975 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 131
Tssr87626 9 118284382 to 118284393 11 + TSS region transcription start site region 87626
Gm22198 9 118287786 to 118288092 306 + unclassified non-coding RNA gene predicted gene, 22198
Gm33088 9 118344032 to 118346189 2157 + lncRNA gene predicted gene, 33088
Cpgi22453 9 118389514 to 118389803 289 CpG island CpG island 22453
2610509F24Rik 9 118402465 to 118403302 837 - unclassified gene RIKEN cDNA 2610509F24 gene
Platr11 9 118404097 to 118406099 2002 - lincRNA gene pluripotency associated transcript 11
Tssr91955 9 118406112 to 118406160 48 - TSS region transcription start site region 91955
D9Mit293 9 118425504 to 118425617 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 293
4933432G23Rik 9 118429839 to 118437048 7209 + lincRNA gene RIKEN cDNA 4933432G23 gene
Gm33285 9 118441280 to 118445976 4696 + lncRNA gene predicted gene, 33285
Gm33408 9 118447241 to 118478648 31407 - lncRNA gene predicted gene, 33408
Gm22479 9 118466984 to 118467064 80 - snRNA gene predicted gene, 22479
Tssr91956 9 118467061 to 118467065 4 - TSS region transcription start site region 91956
Cpgi22454 9 118476658 to 118477155 497 CpG island CpG island 22454
Cpgi22455 9 118477448 to 118477941 493 CpG island CpG island 22455
Tssr87627 9 118478182 to 118478199 17 + TSS region transcription start site region 87627
Eomes 9 118478212 to 118486132 7920 + protein coding gene eomesodermin
Cpgi22456 9 118478408 to 118479862 1454 CpG island CpG island 22456
Tssr87628 9 118478447 to 118478451 4 + TSS region transcription start site region 87628
Tssr87629 9 118478624 to 118478635 11 + TSS region transcription start site region 87629
Tssr91957 9 118478722 to 118478736 14 - TSS region transcription start site region 91957
Tssr87630 9 118478815 to 118478824 9 + TSS region transcription start site region 87630
Tssr87631 9 118478851 to 118478866 15 + TSS region transcription start site region 87631
Tssr87632 9 118480578 to 118480591 13 + TSS region transcription start site region 87632
Tssr87633 9 118481265 to 118481287 22 + TSS region transcription start site region 87633
Tssr87634 9 118485145 to 118485170 25 + TSS region transcription start site region 87634
Gm33460 9 118486244 to 118489779 3535 - antisense lncRNA gene predicted gene, 33460
Cpgi22457 9 118486500 to 118486988 488 CpG island CpG island 22457
Cpgi22458 9 118488081 to 118488383 302 CpG island CpG island 22458
Cpgi22459 9 118505993 to 118507272 1279 CpG island CpG island 22459
Tssr87635 9 118506226 to 118506289 63 + TSS region transcription start site region 87635
Golga4 9 118506267 to 118582519 76252 + protein coding gene golgi autoantigen, golgin subfamily a, 4
Tssr87636 9 118512912 to 118512934 22 + TSS region transcription start site region 87636
Tssr87637 9 118519576 to 118519580 4 + TSS region transcription start site region 87637
Tssr87638 9 118538875 to 118538905 30 + TSS region transcription start site region 87638
Tssr87639 9 118556549 to 118556567 18 + TSS region transcription start site region 87639
Tssr87640 9 118558028 to 118558041 13 + TSS region transcription start site region 87640
Tssr87641 9 118558436 to 118558439 3 + TSS region transcription start site region 87641
Tssr87642 9 118560354 to 118560372 18 + TSS region transcription start site region 87642
Tssr87643 9 118570515 to 118570522 7 + TSS region transcription start site region 87643
Gm18935 9 118571608 to 118572271 663 - pseudogene predicted gene, 18935
Gm45897 9 118584853 to 118590195 5342 - lincRNA gene predicted gene 45897
Cpgi22460 9 118606276 to 118607525 1249 CpG island CpG island 22460
Tssr87644 9 118606687 to 118606751 64 + TSS region transcription start site region 87644
Itga9 9 118606709 to 118901003 294294 + protein coding gene integrin alpha 9
Tssr87645 9 118629183 to 118629185 2 + TSS region transcription start site region 87645
Cpgi22461 9 118674949 to 118675120 171 CpG island CpG island 22461
Tssr91958 9 118701860 to 118701869 9 - TSS region transcription start site region 91958
Tssr87646 9 118703348 to 118703359 11 + TSS region transcription start site region 87646
Tssr87647 9 118703375 to 118703385 10 + TSS region transcription start site region 87647
Tssr87648 9 118703391 to 118703404 13 + TSS region transcription start site region 87648
Tssr87649 9 118703435 to 118703446 11 + TSS region transcription start site region 87649
Tssr87650 9 118703477 to 118703488 11 + TSS region transcription start site region 87650
Tssr87651 9 118703495 to 118703512 17 + TSS region transcription start site region 87651
Tssr87652 9 118703772 to 118703789 17 + TSS region transcription start site region 87652
D9Dcr132 9 118715110 to 118715209 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 132
D9Dcr133 9 118752963 to 118753063 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 133