Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:116171898-118331920

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tgfbr2 9 116087695 to 116175363 87668 - protein coding gene transforming growth factor, beta receptor II
Tssr91916 9 116173102 to 116173106 4 - TSS region transcription start site region 91916
Cpgi22447 9 116174406 to 116175585 1179 CpG island CpG island 22447
Tssr91917 9 116175140 to 116175153 13 - TSS region transcription start site region 91917
Tssr91918 9 116175176 to 116175185 9 - TSS region transcription start site region 91918
Tssr91919 9 116175197 to 116175261 64 - TSS region transcription start site region 91919
Tssr91920 9 116175266 to 116175305 39 - TSS region transcription start site region 91920
Tssr87595 9 116175288 to 116175297 9 + TSS region transcription start site region 87595
Tssr91921 9 116175318 to 116175329 11 - TSS region transcription start site region 91921
Tssr91922 9 116175440 to 116175451 11 - TSS region transcription start site region 91922
Gm40582 9 116175644 to 116178607 2963 + lncRNA gene predicted gene, 40582
Tssr91923 9 116175716 to 116175732 16 - TSS region transcription start site region 91923
Tssr91924 9 116175901 to 116175928 27 - TSS region transcription start site region 91924
Tssr87596 9 116189174 to 116189185 11 + TSS region transcription start site region 87596
Gm4668 9 116189180 to 116194886 5706 + lincRNA gene predicted gene 4668
Tssr87597 9 116197964 to 116197973 9 + TSS region transcription start site region 87597
Gm48038 9 116199297 to 116200612 1315 + lincRNA gene predicted gene, 48038
Tssr87598 9 116208578 to 116208597 19 + TSS region transcription start site region 87598
Gm31410 9 116218802 to 116249753 30951 + lincRNA gene predicted gene, 31410
Tssr91925 9 116218972 to 116218977 5 - TSS region transcription start site region 91925
D9Mit119.1 9 116255352 to 116255494 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 119.1
D9Mit119 9 116255529 to 116255645 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 119
D9Mit137 9 116258781 to 116258923 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 137
Tssr87599 9 116314430 to 116314433 3 + TSS region transcription start site region 87599
D730003K21Rik 9 116327337 to 116339511 12174 + lincRNA gene RIKEN cDNA D730003K21 gene
Tssr91926 9 116366303 to 116366330 27 - TSS region transcription start site region 91926
Tssr87600 9 116370134 to 116370135 1 + TSS region transcription start site region 87600
Tssr91927 9 116384280 to 116384316 36 - TSS region transcription start site region 91927
Gm31559 9 116392889 to 116399481 6592 + lncRNA gene predicted gene, 31559
D9Dcr129 9 116518253 to 116518419 166 DNA segment DNA segment, Chr 9, Derry C. Roopenian 129
D9Mit311 9 116518264 to 116518403 139 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 311
Gm39449 9 116525131 to 116540406 15275 + lncRNA gene predicted gene, 39449
Rbms3 9 116572746 to 117629913 1057167 - protein coding gene RNA binding motif, single stranded interacting protein
Tssr91928 9 116612535 to 116612538 3 - TSS region transcription start site region 91928
Tssr91929 9 116618490 to 116618503 13 - TSS region transcription start site region 91929
Tssr91930 9 116618770 to 116618816 46 - TSS region transcription start site region 91930
Tssr91931 9 116673285 to 116673289 4 - TSS region transcription start site region 91931
Tssr91932 9 116715436 to 116715462 26 - TSS region transcription start site region 91932
Tssr91933 9 116860113 to 116860117 4 - TSS region transcription start site region 91933
Cpgi22448 9 116873261 to 116873574 313 CpG island CpG island 22448
Tssr91934 9 116979139 to 116979151 12 - TSS region transcription start site region 91934
Tssr91935 9 116980672 to 116980676 4 - TSS region transcription start site region 91935
Tssr91936 9 117046530 to 117046543 13 - TSS region transcription start site region 91936
Gm18489 9 117059158 to 117059708 550 + pseudogene predicted gene, 18489
Gm20397 9 117065527 to 117065888 361 + pseudogene predicted gene 20397
Tssr91937 9 117093284 to 117093297 13 - TSS region transcription start site region 91937
D9Jpk2 9 117134460 to 117134575 115 DNA segment DNA segment, Chr 9, Japan, Kominami 2
Gm39452 9 117178329 to 117181558 3229 - lncRNA gene predicted gene, 39452
D9Dcr130 9 117193422 to 117193517 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 130
Tssr91938 9 117251898 to 117251920 22 - TSS region transcription start site region 91938
Tssr91939 9 117252065 to 117252082 17 - TSS region transcription start site region 91939
Tssr91940 9 117252111 to 117252125 14 - TSS region transcription start site region 91940
Tssr91941 9 117252126 to 117252183 57 - TSS region transcription start site region 91941
Tssr91942 9 117252192 to 117252216 24 - TSS region transcription start site region 91942
Tssr91943 9 117252345 to 117252383 38 - TSS region transcription start site region 91943
Tssr91944 9 117252450 to 117252489 39 - TSS region transcription start site region 91944
Tssr87601 9 117252521 to 117252559 38 + TSS region transcription start site region 87601
Gm17396 9 117252536 to 117254696 2160 + unclassified non-coding RNA gene predicted gene, 17396
Tssr91945 9 117252665 to 117252724 59 - TSS region transcription start site region 91945
Gm39451 9 117315988 to 117352371 36383 + lncRNA gene predicted gene, 39451
Tssr87602 9 117317523 to 117317546 23 + TSS region transcription start site region 87602
D9Mit56 9 117346072 to 117346177 105 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 56
Gm20396 9 117402979 to 117404342 1363 + pseudogene predicted gene 20396
D9Mit201 9 117436166 to 117436273 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 201
Tssr91946 9 117588673 to 117588675 2 - TSS region transcription start site region 91946
Gm45881 9 117708192 to 117872584 164392 - lincRNA gene predicted gene 45881
Gm39450 9 117722791 to 117725284 2493 + lncRNA gene predicted gene, 39450
Tssr87603 9 117856910 to 117856913 3 + TSS region transcription start site region 87603
Tssr87604 9 117859979 to 117859983 4 + TSS region transcription start site region 87604
Cpgi22449 9 117871925 to 117873451 1526 CpG island CpG island 22449
Tssr87605 9 117872223 to 117872236 13 + TSS region transcription start site region 87605
Tssr91947 9 117872545 to 117872602 57 - TSS region transcription start site region 91947
Gm26614 9 117873144 to 117881202 8058 + lincRNA gene predicted gene, 26614
Zcwpw2 9 117876000 to 118040259 164259 - pseudogene zinc finger, CW type with PWWP domain 2
Cpgi22450 9 117902256 to 117902489 233 CpG island CpG island 22450
Gm22008 9 117999336 to 117999430 94 + miRNA gene predicted gene, 22008
Cpgi22451 9 118040020 to 118041372 1352 CpG island CpG island 22451
Tssr91948 9 118040313 to 118040333 20 - TSS region transcription start site region 91948
Tssr91949 9 118040375 to 118040391 16 - TSS region transcription start site region 91949
Tssr87606 9 118040475 to 118040494 19 + TSS region transcription start site region 87606
Tssr87607 9 118040509 to 118040566 57 + TSS region transcription start site region 87607
Azi2 9 118040522 to 118069798 29276 + protein coding gene 5-azacytidine induced gene 2
Tssr87608 9 118040576 to 118040583 7 + TSS region transcription start site region 87608
Tssr87609 9 118040594 to 118040604 10 + TSS region transcription start site region 87609
Tssr87610 9 118040608 to 118040615 7 + TSS region transcription start site region 87610
Tssr87611 9 118040623 to 118040630 7 + TSS region transcription start site region 87611
Tssr87612 9 118040658 to 118040669 11 + TSS region transcription start site region 87612
Tssr87613 9 118041158 to 118041162 4 + TSS region transcription start site region 87613
Tssr87614 9 118043882 to 118043920 38 + TSS region transcription start site region 87614
Tssr87615 9 118047388 to 118047398 10 + TSS region transcription start site region 87615
Tssr87616 9 118049709 to 118049725 16 + TSS region transcription start site region 87616
Tssr87617 9 118049762 to 118049773 11 + TSS region transcription start site region 87617
Tssr87618 9 118049990 to 118050004 14 + TSS region transcription start site region 87618
Tssr87619 9 118050058 to 118050101 43 + TSS region transcription start site region 87619
Tssr87620 9 118050226 to 118050231 5 + TSS region transcription start site region 87620
Tssr87621 9 118052449 to 118052458 9 + TSS region transcription start site region 87621
Tssr87622 9 118054948 to 118054952 4 + TSS region transcription start site region 87622
Tssr87623 9 118059090 to 118059134 44 + TSS region transcription start site region 87623
Tssr87624 9 118059448 to 118059466 18 + TSS region transcription start site region 87624
Lcho1 9 118060861 to 118061002 141 QTL liver cholesterol 1
D9Mit279 9 118060861 to 118061002 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 279
Cmc1 9 118064522 to 118150177 85655 - protein coding gene COX assembly mitochondrial protein 1
Tssr87625 9 118079271 to 118079275 4 + TSS region transcription start site region 87625
Tssr91950 9 118108949 to 118108951 2 - TSS region transcription start site region 91950
Cpgi22452 9 118149786 to 118150397 611 CpG island CpG island 22452
Tssr91951 9 118150041 to 118150077 36 - TSS region transcription start site region 91951
Tssr91952 9 118150079 to 118150106 27 - TSS region transcription start site region 91952
Tssr91953 9 118150171 to 118150182 11 - TSS region transcription start site region 91953
Tssr91954 9 118150201 to 118150208 7 - TSS region transcription start site region 91954
Gm17399 9 118150231 to 118170376 20145 + lincRNA gene predicted gene, 17399
D9Dcr131 9 118218880 to 118218975 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 131
Tssr87626 9 118284382 to 118284393 11 + TSS region transcription start site region 87626
Gm22198 9 118287786 to 118288092 306 + unclassified non-coding RNA gene predicted gene, 22198