Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:114778569-115432225

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cmtm7 9 114756836 to 114781856 25020 - protein coding gene CKLF-like MARVEL transmembrane domain containing 7
Tssr91866 9 114778787 to 114778808 21 - TSS region transcription start site region 91866
Tssr91867 9 114778818 to 114778832 14 - TSS region transcription start site region 91867
Tssr91868 9 114778922 to 114778926 4 - TSS region transcription start site region 91868
Tssr91869 9 114778974 to 114778989 15 - TSS region transcription start site region 91869
Tssr91870 9 114779255 to 114779261 6 - TSS region transcription start site region 91870
Gm9888 9 114780100 to 114782257 2157 + antisense lncRNA gene predicted gene 9888
Tssr87581 9 114781086 to 114781125 39 + TSS region transcription start site region 87581
Cpgi22434 9 114781174 to 114782260 1086 CpG island CpG island 22434
Tssr91871 9 114781360 to 114781381 21 - TSS region transcription start site region 91871
Tssr91872 9 114781385 to 114781408 23 - TSS region transcription start site region 91872
Tssr91873 9 114781790 to 114781799 9 - TSS region transcription start site region 91873
Tssr91874 9 114781811 to 114781887 76 - TSS region transcription start site region 91874
Tssr91875 9 114781945 to 114781956 11 - TSS region transcription start site region 91875
Tssr91876 9 114781986 to 114781998 12 - TSS region transcription start site region 91876
Cmtm8 9 114789343 to 114844152 54809 - protein coding gene CKLF-like MARVEL transmembrane domain containing 8
Tssr91877 9 114819033 to 114819042 9 - TSS region transcription start site region 91877
Tssr91878 9 114819077 to 114819086 9 - TSS region transcription start site region 91878
D9Mit55 9 114820285 to 114820396 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 55
Gm23889 9 114838173 to 114838276 103 + snRNA gene predicted gene, 23889
Cpgi22435 9 114843559 to 114844760 1201 CpG island CpG island 22435
Tssr91879 9 114844090 to 114844171 81 - TSS region transcription start site region 91879
Tssr91880 9 114844728 to 114844734 6 - TSS region transcription start site region 91880
Gm30448 9 114846988 to 114853663 6675 - lncRNA gene predicted gene, 30448
Gpd1l 9 114899341 to 114933987 34646 - protein coding gene glycerol-3-phosphate dehydrogenase 1-like
Tssr91881 9 114902334 to 114902340 6 - TSS region transcription start site region 91881
D9Mit16 9 114902536 to 114902713 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 16
Cpgi22436 9 114904779 to 114905031 252 CpG island CpG island 22436
D9Mit125 9 114929102 to 114929213 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 125
Cpgi22437 9 114933084 to 114934205 1121 CpG island CpG island 22437
Gm10609 9 114933424 to 114935989 2565 protein coding gene predicted gene 10609
Tssr91882 9 114933586 to 114933646 60 - TSS region transcription start site region 91882
Tssr91883 9 114933811 to 114933890 79 - TSS region transcription start site region 91883
Tssr91884 9 114933929 to 114933999 70 - TSS region transcription start site region 91884
Cpgi22438 9 114977748 to 114979437 1689 CpG island CpG island 22438
Tssr87582 9 114978433 to 114978461 28 + TSS region transcription start site region 87582
Tssr87583 9 114978479 to 114978506 27 + TSS region transcription start site region 87583
Tssr87584 9 114978507 to 114978550 43 + TSS region transcription start site region 87584
Osbpl10 9 114978569 to 115232225 253656 + protein coding gene oxysterol binding protein-like 10
Rps27rt 9 114982366 to 114982739 373 - protein coding gene ribosomal protein S27, retrogene
Tssr91885 9 114982739 to 114982742 3 - TSS region transcription start site region 91885
Tssr91886 9 114986705 to 114986707 2 - TSS region transcription start site region 91886
Tssr87585 9 114998944 to 114998990 46 + TSS region transcription start site region 87585
Tssr91887 9 115035025 to 115035031 6 - TSS region transcription start site region 91887
Tssr87586 9 115039529 to 115039534 5 + TSS region transcription start site region 87586
Tssr87587 9 115088834 to 115088847 13 + TSS region transcription start site region 87587
D9Dcr125 9 115121857 to 115121969 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 125
Cpgi22439 9 115150422 to 115150890 468 CpG island CpG island 22439
Cpgi22440 9 115151492 to 115151657 165 CpG island CpG island 22440
Tssr87588 9 115167243 to 115167245 2 + TSS region transcription start site region 87588
Gm4665 9 115180404 to 115186058 5654 - antisense lncRNA gene predicted gene 4665
Tssr91888 9 115186038 to 115186071 33 - TSS region transcription start site region 91888
Tssr3048 9 115186199 to 115186230 31 + TSS region transcription start site region 3048
Gm26962 9 115195453 to 115196898 1445 - antisense lncRNA gene predicted gene, 26962
Tssr87589 9 115200395 to 115200438 43 + TSS region transcription start site region 87589
Gm27002 9 115200398 to 115203875 3477 + sense intronic lncRNA gene predicted gene, 27002
Tssr87590 9 115200885 to 115200889 4 + TSS region transcription start site region 87590
Tssr87591 9 115216504 to 115216531 27 + TSS region transcription start site region 87591
Cpgi22441 9 115216550 to 115216751 201 CpG island CpG island 22441
2210411A11Rik 9 115232725 to 115233757 1032 unclassified gene RIKEN cDNA 2210411A11 gene
Stt3b 9 115242581 to 115310421 67840 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
Tssr91889 9 115243712 to 115243728 16 - TSS region transcription start site region 91889
Stmn1-rs1 9 115281520 to 115281981 461 - pseudogene stathmin 1, related sequence 1
Tssr91890 9 115282066 to 115282075 9 - TSS region transcription start site region 91890
Tssr91891 9 115293446 to 115293451 5 - TSS region transcription start site region 91891
Tssr91892 9 115298122 to 115298125 3 - TSS region transcription start site region 91892
Cpgi22442 9 115309254 to 115311128 1874 CpG island CpG island 22442
Gm9757 9 115309820 to 115312072 2252 unclassified gene predicted gene 9757
Tssr91893 9 115310057 to 115310065 8 - TSS region transcription start site region 91893
Tssr91894 9 115310072 to 115310094 22 - TSS region transcription start site region 91894
Tssr91895 9 115310100 to 115310157 57 - TSS region transcription start site region 91895
Tssr91896 9 115310165 to 115310181 16 - TSS region transcription start site region 91896
Tssr91897 9 115310239 to 115310250 11 - TSS region transcription start site region 91897
Tssr91898 9 115310285 to 115310296 11 - TSS region transcription start site region 91898
Tssr91899 9 115310400 to 115310407 7 - TSS region transcription start site region 91899
Tssr91900 9 115310425 to 115310447 22 - TSS region transcription start site region 91900
Tssr91901 9 115310459 to 115310484 25 - TSS region transcription start site region 91901
Tssr91902 9 115310511 to 115310520 9 - TSS region transcription start site region 91902
Tssr91903 9 115310538 to 115310549 11 - TSS region transcription start site region 91903
Tssr91904 9 115310564 to 115310570 6 - TSS region transcription start site region 91904
Tssr91905 9 115310864 to 115310877 13 - TSS region transcription start site region 91905
Tssr87592 9 115311166 to 115311169 3 + TSS region transcription start site region 87592
4930428G15Rik 9 115336161 to 115341924 5763 + lncRNA gene RIKEN cDNA 4930428G15 gene
Gm30762 9 115347699 to 115370698 22999 + lncRNA gene predicted gene, 30762
Mir467h 9 115381819 to 115381939 120 + miRNA gene microRNA 467h
Gm26303 9 115381960 to 115382078 118 + miRNA gene predicted gene, 26303
Gm25510 9 115382099 to 115382221 122 + miRNA gene predicted gene, 25510
Gm40581 9 115391580 to 115394060 2480 - lncRNA gene predicted gene, 40581
D9Mit214 9 115398712 to 115398849 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 214
D9Dcr126 9 115398712 to 115398840 128 DNA segment DNA segment, Chr 9, Derry C. Roopenian 126
Gm40587 9 115399907 to 115400651 744 + protein coding gene predicted gene, 40587
Gm9487 9 115405149 to 115405620 471 + pseudogene predicted gene 9487
Gm22243 9 115411234 to 115411353 119 - miRNA gene predicted gene, 22243