Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:113982861-114753695

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxl2 9 113958557 to 114026787 68230 - protein coding gene F-box and leucine-rich repeat protein 2
Gm36035 9 114004771 to 114005261 490 - pseudogene predicted gene, 36035
Cpgi22413 9 114010054 to 114010230 176 CpG island CpG island 22413
Cpgi22414 9 114011340 to 114011504 164 CpG island CpG island 22414
Cpgi22415 9 114026210 to 114026998 788 CpG island CpG island 22415
Tssr91830 9 114026711 to 114026764 53 - TSS region transcription start site region 91830
Gm36883 9 114050649 to 114057041 6392 - lncRNA gene predicted gene, 36883
Cpgi22416 9 114057125 to 114058143 1018 CpG island CpG island 22416
Susd5 9 114057354 to 114098733 41379 + protein coding gene sushi domain containing 5
Tssr87554 9 114057428 to 114057449 21 + TSS region transcription start site region 87554
Tssr87555 9 114057458 to 114057479 21 + TSS region transcription start site region 87555
Cpgi22417 9 114073828 to 114074056 228 CpG island CpG island 22417
Cpgi22418 9 114096540 to 114096954 414 CpG island CpG island 22418
Tssr3046 9 114118085 to 114118089 4 + TSS region transcription start site region 3046
Gm29825 9 114118088 to 114192640 74552 + lincRNA gene predicted gene, 29825
4921528I07Rik 9 114237697 to 114317028 79331 - unclassified non-coding RNA gene RIKEN cDNA 4921528I07 gene
Bcl2a1c 9 114330135 to 114330578 443 + protein coding gene B cell leukemia/lymphoma 2 related protein A1c
4930525D18Rik 9 114341111 to 114364627 23516 - lncRNA gene RIKEN cDNA 4930525D18 gene
Tssr3047 9 114363955 to 114364002 47 - TSS region transcription start site region 3047
Tssr91831 9 114365661 to 114365686 25 - TSS region transcription start site region 91831
4933421H06Rik 9 114366495 to 114368229 1734 unclassified gene RIKEN cDNA 4933421H06 gene
Cpgi22419 9 114367861 to 114368695 834 CpG island CpG island 22419
Tssr91832 9 114368221 to 114368245 24 - TSS region transcription start site region 91832
4930520O04Rik 9 114368324 to 114377238 8914 + lncRNA gene RIKEN cDNA 4930520O04 gene
Tssr87556 9 114368468 to 114368476 8 + TSS region transcription start site region 87556
Crtap 9 114375134 to 114390675 15541 - protein coding gene cartilage associated protein
Cpgi22420 9 114384668 to 114385018 350 CpG island CpG island 22420
Cpgi22421 9 114389729 to 114391103 1374 CpG island CpG island 22421
Tssr87557 9 114390153 to 114390167 14 + TSS region transcription start site region 87557
Tssr91833 9 114390633 to 114390687 54 - TSS region transcription start site region 91833
Cpgi22422 9 114400878 to 114402032 1154 CpG island CpG island 22422
Glb1 9 114401078 to 114474379 73301 + protein coding gene galactosidase, beta 1
Tssr87558 9 114401092 to 114401133 41 + TSS region transcription start site region 87558
Tmppe 9 114401105 to 114407276 6171 + protein coding gene transmembrane protein with metallophosphoesterase domain
Tssr87559 9 114401139 to 114401155 16 + TSS region transcription start site region 87559
Tssr87560 9 114401447 to 114401474 27 + TSS region transcription start site region 87560
Tssr87561 9 114401477 to 114401495 18 + TSS region transcription start site region 87561
Tssr87562 9 114401501 to 114401515 14 + TSS region transcription start site region 87562
Tssr87563 9 114411011 to 114411015 4 + TSS region transcription start site region 87563
Tssr91834 9 114417599 to 114417642 43 - TSS region transcription start site region 91834
Tssr87564 9 114418443 to 114418479 36 + TSS region transcription start site region 87564
Tssr87565 9 114422128 to 114422131 3 + TSS region transcription start site region 87565
Mdq9 9 114428637 to 114428637 0 QTL mammary ductal QTL 9
Tssr87566 9 114440854 to 114440865 11 + TSS region transcription start site region 87566
Gm30254 9 114450679 to 114461047 10368 - lncRNA gene predicted gene, 30254
Tssr91835 9 114461725 to 114461739 14 - TSS region transcription start site region 91835
El7 9 114474379 to 75775364 -38699015 QTL epilepsy 7
El1 9 114474379 to 75775364 -38699015 QTL epilepsy 1
Ccr4 9 114490316 to 114504916 14600 - protein coding gene chemokine (C-C motif) receptor 4
Tssr91836 9 114496537 to 114496551 14 - TSS region transcription start site region 91836
Tssr91837 9 114496571 to 114496581 10 - TSS region transcription start site region 91837
Tssr91838 9 114496596 to 114496605 9 - TSS region transcription start site region 91838
Tssr91839 9 114496609 to 114496620 11 - TSS region transcription start site region 91839
Tssr91840 9 114497337 to 114497351 14 - TSS region transcription start site region 91840
Tssr91841 9 114501213 to 114501254 41 - TSS region transcription start site region 91841
Trim71 9 114511268 to 114564369 53101 - protein coding gene tripartite motif-containing 71
Tssr91842 9 114512439 to 114512443 4 - TSS region transcription start site region 91842
C130032M10Rik 9 114515697 to 114516424 727 + protein coding gene RIKEN cDNA C130032M10 gene
Tssr87567 9 114515713 to 114515750 37 + TSS region transcription start site region 87567
Tssr91843 9 114520614 to 114520620 6 - TSS region transcription start site region 91843
Cpgi22423 9 114560941 to 114561701 760 CpG island CpG island 22423
Cpgi22424 9 114562125 to 114564585 2460 CpG island CpG island 22424
Tssr91844 9 114563242 to 114563253 11 - TSS region transcription start site region 91844
Tssr91845 9 114563269 to 114563283 14 - TSS region transcription start site region 91845
Tssr91846 9 114563287 to 114563303 16 - TSS region transcription start site region 91846
Tssr91847 9 114564086 to 114564103 17 - TSS region transcription start site region 91847
Tssr91848 9 114564197 to 114564209 12 - TSS region transcription start site region 91848
Tssr91849 9 114564288 to 114564295 7 - TSS region transcription start site region 91849
Tssr91850 9 114564315 to 114564334 19 - TSS region transcription start site region 91850
Tssr91851 9 114564338 to 114564349 11 - TSS region transcription start site region 91851
Cpgi22425 9 114579399 to 114579592 193 CpG island CpG island 22425
Cpgi22426 9 114579908 to 114580217 309 CpG island CpG island 22426
Cpgi22427 9 114583828 to 114584195 367 CpG island CpG island 22427
Tssr91852 9 114584262 to 114584275 13 - TSS region transcription start site region 91852
Cnot10 9 114585878 to 114640184 54306 - protein coding gene CCR4-NOT transcription complex, subunit 10
Gm23232 9 114602088 to 114602192 104 - snRNA gene predicted gene, 23232
Cpgi22428 9 114639459 to 114640332 873 CpG island CpG island 22428
Tssr91853 9 114640027 to 114640047 20 - TSS region transcription start site region 91853
Tssr91854 9 114640052 to 114640113 61 - TSS region transcription start site region 91854
Tssr91855 9 114640124 to 114640135 11 - TSS region transcription start site region 91855
Tssr91856 9 114640155 to 114640167 12 - TSS region transcription start site region 91856
Tssr91857 9 114640175 to 114640218 43 - TSS region transcription start site region 91857
Gm7780 9 114647630 to 114648035 405 - pseudogene predicted gene 7780
Cpgi22429 9 114651019 to 114651309 290 CpG island CpG island 22429
D9Mit1000 9 114678896 to 114679119 223 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1000
Cpgi22430 9 114688192 to 114689693 1501 CpG island CpG island 22430
Tssr91858 9 114688633 to 114688663 30 - TSS region transcription start site region 91858
Tssr87568 9 114688729 to 114688740 11 + TSS region transcription start site region 87568
Tssr87569 9 114688744 to 114688778 34 + TSS region transcription start site region 87569
Tssr87570 9 114688782 to 114688813 31 + TSS region transcription start site region 87570
Tssr87571 9 114688814 to 114688819 5 + TSS region transcription start site region 87571
Tssr87572 9 114688820 to 114688833 13 + TSS region transcription start site region 87572
Dync1li1 9 114688831 to 114723788 34957 + protein coding gene dynein cytoplasmic 1 light intermediate chain 1
Tssr87573 9 114688836 to 114688846 10 + TSS region transcription start site region 87573
Tssr87574 9 114688851 to 114688865 14 + TSS region transcription start site region 87574
Tssr87575 9 114688866 to 114688877 11 + TSS region transcription start site region 87575
Tssr87576 9 114689879 to 114689884 5 + TSS region transcription start site region 87576
Tssr87577 9 114722310 to 114722315 5 + TSS region transcription start site region 87577
Tssr87578 9 114723505 to 114723520 15 + TSS region transcription start site region 87578
Cpgi22431 9 114730986 to 114731618 632 CpG island CpG island 22431
Cmtm6 9 114731157 to 114749347 18190 + protein coding gene CKLF-like MARVEL transmembrane domain containing 6
Tssr87579 9 114731177 to 114731234 57 + TSS region transcription start site region 87579
Ierepo2 9 114736397 to 114736826 429 unclassified gene immediate early response, erythropoietin 2
Cpgi22432 9 114752787 to 114753458 671 CpG island CpG island 22432