Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:113958122-116638125

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287 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubp1 9 113930934 to 113977202 46268 + protein coding gene upstream binding protein 1
Fbxl2 9 113958557 to 114026787 68230 - protein coding gene F-box and leucine-rich repeat protein 2
Tssr87549 9 113958697 to 113958712 15 + TSS region transcription start site region 87549
Tssr87550 9 113969209 to 113969216 7 + TSS region transcription start site region 87550
Tssr87551 9 113969221 to 113969229 8 + TSS region transcription start site region 87551
Tssr87552 9 113969236 to 113969252 16 + TSS region transcription start site region 87552
Gm47950 9 113969984 to 113970998 1014 - antisense lncRNA gene predicted gene, 47950
Tssr87553 9 113976287 to 113976314 27 + TSS region transcription start site region 87553
Gm36035 9 114004771 to 114005261 490 - pseudogene predicted gene, 36035
Cpgi22413 9 114010054 to 114010230 176 CpG island CpG island 22413
Cpgi22414 9 114011340 to 114011504 164 CpG island CpG island 22414
Cpgi22415 9 114026210 to 114026998 788 CpG island CpG island 22415
Tssr91830 9 114026711 to 114026764 53 - TSS region transcription start site region 91830
Gm36883 9 114050649 to 114057041 6392 - lncRNA gene predicted gene, 36883
Cpgi22416 9 114057125 to 114058143 1018 CpG island CpG island 22416
Susd5 9 114057354 to 114098733 41379 + protein coding gene sushi domain containing 5
Tssr87554 9 114057428 to 114057449 21 + TSS region transcription start site region 87554
Tssr87555 9 114057458 to 114057479 21 + TSS region transcription start site region 87555
Cpgi22417 9 114073828 to 114074056 228 CpG island CpG island 22417
Cpgi22418 9 114096540 to 114096954 414 CpG island CpG island 22418
Tssr3046 9 114118085 to 114118089 4 + TSS region transcription start site region 3046
Gm29825 9 114118088 to 114192640 74552 + lincRNA gene predicted gene, 29825
4921528I07Rik 9 114237697 to 114317028 79331 - unclassified non-coding RNA gene RIKEN cDNA 4921528I07 gene
Bcl2a1c 9 114330135 to 114330578 443 + protein coding gene B cell leukemia/lymphoma 2 related protein A1c
4930525D18Rik 9 114341111 to 114364627 23516 - lncRNA gene RIKEN cDNA 4930525D18 gene
Tssr3047 9 114363955 to 114364002 47 - TSS region transcription start site region 3047
Tssr91831 9 114365661 to 114365686 25 - TSS region transcription start site region 91831
4933421H06Rik 9 114366495 to 114368229 1734 unclassified gene RIKEN cDNA 4933421H06 gene
Cpgi22419 9 114367861 to 114368695 834 CpG island CpG island 22419
Tssr91832 9 114368221 to 114368245 24 - TSS region transcription start site region 91832
4930520O04Rik 9 114368324 to 114377238 8914 + lncRNA gene RIKEN cDNA 4930520O04 gene
Tssr87556 9 114368468 to 114368476 8 + TSS region transcription start site region 87556
Crtap 9 114375134 to 114390675 15541 - protein coding gene cartilage associated protein
Cpgi22420 9 114384668 to 114385018 350 CpG island CpG island 22420
Cpgi22421 9 114389729 to 114391103 1374 CpG island CpG island 22421
Tssr87557 9 114390153 to 114390167 14 + TSS region transcription start site region 87557
Tssr91833 9 114390633 to 114390687 54 - TSS region transcription start site region 91833
Cpgi22422 9 114400878 to 114402032 1154 CpG island CpG island 22422
Glb1 9 114401078 to 114474379 73301 + protein coding gene galactosidase, beta 1
Tssr87558 9 114401092 to 114401133 41 + TSS region transcription start site region 87558
Tmppe 9 114401105 to 114407276 6171 + protein coding gene transmembrane protein with metallophosphoesterase domain
Tssr87559 9 114401139 to 114401155 16 + TSS region transcription start site region 87559
Tssr87560 9 114401447 to 114401474 27 + TSS region transcription start site region 87560
Tssr87561 9 114401477 to 114401495 18 + TSS region transcription start site region 87561
Tssr87562 9 114401501 to 114401515 14 + TSS region transcription start site region 87562
Tssr87563 9 114411011 to 114411015 4 + TSS region transcription start site region 87563
Tssr91834 9 114417599 to 114417642 43 - TSS region transcription start site region 91834
Tssr87564 9 114418443 to 114418479 36 + TSS region transcription start site region 87564
Tssr87565 9 114422128 to 114422131 3 + TSS region transcription start site region 87565
Mdq9 9 114428637 to 114428637 0 QTL mammary ductal QTL 9
Tssr87566 9 114440854 to 114440865 11 + TSS region transcription start site region 87566
Gm30254 9 114450679 to 114461047 10368 - lncRNA gene predicted gene, 30254
Tssr91835 9 114461725 to 114461739 14 - TSS region transcription start site region 91835
El1 9 114474379 to 75775364 -38699015 QTL epilepsy 1
El7 9 114474379 to 75775364 -38699015 QTL epilepsy 7
Ccr4 9 114490316 to 114504916 14600 - protein coding gene chemokine (C-C motif) receptor 4
Tssr91836 9 114496537 to 114496551 14 - TSS region transcription start site region 91836
Tssr91837 9 114496571 to 114496581 10 - TSS region transcription start site region 91837
Tssr91838 9 114496596 to 114496605 9 - TSS region transcription start site region 91838
Tssr91839 9 114496609 to 114496620 11 - TSS region transcription start site region 91839
Tssr91840 9 114497337 to 114497351 14 - TSS region transcription start site region 91840
Tssr91841 9 114501213 to 114501254 41 - TSS region transcription start site region 91841
Trim71 9 114511268 to 114564369 53101 - protein coding gene tripartite motif-containing 71
Tssr91842 9 114512439 to 114512443 4 - TSS region transcription start site region 91842
C130032M10Rik 9 114515697 to 114516424 727 + protein coding gene RIKEN cDNA C130032M10 gene
Tssr87567 9 114515713 to 114515750 37 + TSS region transcription start site region 87567
Tssr91843 9 114520614 to 114520620 6 - TSS region transcription start site region 91843
Cpgi22423 9 114560941 to 114561701 760 CpG island CpG island 22423
Cpgi22424 9 114562125 to 114564585 2460 CpG island CpG island 22424
Tssr91844 9 114563242 to 114563253 11 - TSS region transcription start site region 91844
Tssr91845 9 114563269 to 114563283 14 - TSS region transcription start site region 91845
Tssr91846 9 114563287 to 114563303 16 - TSS region transcription start site region 91846
Tssr91847 9 114564086 to 114564103 17 - TSS region transcription start site region 91847
Tssr91848 9 114564197 to 114564209 12 - TSS region transcription start site region 91848
Tssr91849 9 114564288 to 114564295 7 - TSS region transcription start site region 91849
Tssr91850 9 114564315 to 114564334 19 - TSS region transcription start site region 91850
Tssr91851 9 114564338 to 114564349 11 - TSS region transcription start site region 91851
Cpgi22425 9 114579399 to 114579592 193 CpG island CpG island 22425
Cpgi22426 9 114579908 to 114580217 309 CpG island CpG island 22426
Cpgi22427 9 114583828 to 114584195 367 CpG island CpG island 22427
Tssr91852 9 114584262 to 114584275 13 - TSS region transcription start site region 91852
Cnot10 9 114585878 to 114640184 54306 - protein coding gene CCR4-NOT transcription complex, subunit 10
Gm23232 9 114602088 to 114602192 104 - snRNA gene predicted gene, 23232
Cpgi22428 9 114639459 to 114640332 873 CpG island CpG island 22428
Tssr91853 9 114640027 to 114640047 20 - TSS region transcription start site region 91853
Tssr91854 9 114640052 to 114640113 61 - TSS region transcription start site region 91854
Tssr91855 9 114640124 to 114640135 11 - TSS region transcription start site region 91855
Tssr91856 9 114640155 to 114640167 12 - TSS region transcription start site region 91856
Tssr91857 9 114640175 to 114640218 43 - TSS region transcription start site region 91857
Gm7780 9 114647630 to 114648035 405 - pseudogene predicted gene 7780
Cpgi22429 9 114651019 to 114651309 290 CpG island CpG island 22429
D9Mit1000 9 114678896 to 114679119 223 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1000
Cpgi22430 9 114688192 to 114689693 1501 CpG island CpG island 22430
Tssr91858 9 114688633 to 114688663 30 - TSS region transcription start site region 91858
Tssr87568 9 114688729 to 114688740 11 + TSS region transcription start site region 87568
Tssr87569 9 114688744 to 114688778 34 + TSS region transcription start site region 87569
Tssr87570 9 114688782 to 114688813 31 + TSS region transcription start site region 87570
Tssr87571 9 114688814 to 114688819 5 + TSS region transcription start site region 87571
Tssr87572 9 114688820 to 114688833 13 + TSS region transcription start site region 87572
Dync1li1 9 114688831 to 114723788 34957 + protein coding gene dynein cytoplasmic 1 light intermediate chain 1
Tssr87573 9 114688836 to 114688846 10 + TSS region transcription start site region 87573
Tssr87574 9 114688851 to 114688865 14 + TSS region transcription start site region 87574
Tssr87575 9 114688866 to 114688877 11 + TSS region transcription start site region 87575
Tssr87576 9 114689879 to 114689884 5 + TSS region transcription start site region 87576
Tssr87577 9 114722310 to 114722315 5 + TSS region transcription start site region 87577
Tssr87578 9 114723505 to 114723520 15 + TSS region transcription start site region 87578
Cpgi22431 9 114730986 to 114731618 632 CpG island CpG island 22431
Cmtm6 9 114731157 to 114749347 18190 + protein coding gene CKLF-like MARVEL transmembrane domain containing 6
Tssr87579 9 114731177 to 114731234 57 + TSS region transcription start site region 87579
Ierepo2 9 114736397 to 114736826 429 unclassified gene immediate early response, erythropoietin 2
Cpgi22432 9 114752787 to 114753458 671 CpG island CpG island 22432
Tssr87580 9 114756833 to 114756842 9 + TSS region transcription start site region 87580
Cmtm7 9 114756836 to 114781856 25020 - protein coding gene CKLF-like MARVEL transmembrane domain containing 7
Cpgi22433 9 114763195 to 114763459 264 CpG island CpG island 22433
D9Mit81 9 114766805 to 114766971 166 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 81
Tssr91859 9 114774754 to 114774758 4 - TSS region transcription start site region 91859
Tssr91860 9 114775381 to 114775392 11 - TSS region transcription start site region 91860
Tssr91861 9 114775414 to 114775425 11 - TSS region transcription start site region 91861
Tssr91862 9 114775426 to 114775437 11 - TSS region transcription start site region 91862
Tssr91863 9 114775443 to 114775458 15 - TSS region transcription start site region 91863
Tssr91864 9 114775463 to 114775483 20 - TSS region transcription start site region 91864
Tssr91865 9 114775488 to 114775502 14 - TSS region transcription start site region 91865
Tssr91866 9 114778787 to 114778808 21 - TSS region transcription start site region 91866
Tssr91867 9 114778818 to 114778832 14 - TSS region transcription start site region 91867
Tssr91868 9 114778922 to 114778926 4 - TSS region transcription start site region 91868
Tssr91869 9 114778974 to 114778989 15 - TSS region transcription start site region 91869
Tssr91870 9 114779255 to 114779261 6 - TSS region transcription start site region 91870
Gm9888 9 114780100 to 114782257 2157 + antisense lncRNA gene predicted gene 9888
Tssr87581 9 114781086 to 114781125 39 + TSS region transcription start site region 87581
Cpgi22434 9 114781174 to 114782260 1086 CpG island CpG island 22434
Tssr91871 9 114781360 to 114781381 21 - TSS region transcription start site region 91871
Tssr91872 9 114781385 to 114781408 23 - TSS region transcription start site region 91872
Tssr91873 9 114781790 to 114781799 9 - TSS region transcription start site region 91873
Tssr91874 9 114781811 to 114781887 76 - TSS region transcription start site region 91874
Tssr91875 9 114781945 to 114781956 11 - TSS region transcription start site region 91875
Tssr91876 9 114781986 to 114781998 12 - TSS region transcription start site region 91876
Cmtm8 9 114789343 to 114844152 54809 - protein coding gene CKLF-like MARVEL transmembrane domain containing 8
Tssr91877 9 114819033 to 114819042 9 - TSS region transcription start site region 91877
Tssr91878 9 114819077 to 114819086 9 - TSS region transcription start site region 91878
D9Mit55 9 114820285 to 114820396 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 55
Gm23889 9 114838173 to 114838276 103 + snRNA gene predicted gene, 23889
Cpgi22435 9 114843559 to 114844760 1201 CpG island CpG island 22435
Tssr91879 9 114844090 to 114844171 81 - TSS region transcription start site region 91879
Tssr91880 9 114844728 to 114844734 6 - TSS region transcription start site region 91880
Gm30448 9 114846988 to 114853663 6675 - lncRNA gene predicted gene, 30448
Gpd1l 9 114899341 to 114933987 34646 - protein coding gene glycerol-3-phosphate dehydrogenase 1-like
Tssr91881 9 114902334 to 114902340 6 - TSS region transcription start site region 91881
D9Mit16 9 114902536 to 114902713 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 16
Cpgi22436 9 114904779 to 114905031 252 CpG island CpG island 22436
D9Mit125 9 114929102 to 114929213 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 125
Cpgi22437 9 114933084 to 114934205 1121 CpG island CpG island 22437
Gm10609 9 114933424 to 114935989 2565 protein coding gene predicted gene 10609
Tssr91882 9 114933586 to 114933646 60 - TSS region transcription start site region 91882
Tssr91883 9 114933811 to 114933890 79 - TSS region transcription start site region 91883
Tssr91884 9 114933929 to 114933999 70 - TSS region transcription start site region 91884
Cpgi22438 9 114977748 to 114979437 1689 CpG island CpG island 22438
Tssr87582 9 114978433 to 114978461 28 + TSS region transcription start site region 87582
Tssr87583 9 114978479 to 114978506 27 + TSS region transcription start site region 87583
Tssr87584 9 114978507 to 114978550 43 + TSS region transcription start site region 87584
Osbpl10 9 114978569 to 115232225 253656 + protein coding gene oxysterol binding protein-like 10
Rps27rt 9 114982366 to 114982739 373 - protein coding gene ribosomal protein S27, retrogene
Tssr91885 9 114982739 to 114982742 3 - TSS region transcription start site region 91885
Tssr91886 9 114986705 to 114986707 2 - TSS region transcription start site region 91886
Tssr87585 9 114998944 to 114998990 46 + TSS region transcription start site region 87585
Tssr91887 9 115035025 to 115035031 6 - TSS region transcription start site region 91887
Tssr87586 9 115039529 to 115039534 5 + TSS region transcription start site region 87586
Tssr87587 9 115088834 to 115088847 13 + TSS region transcription start site region 87587
D9Dcr125 9 115121857 to 115121969 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 125
Cpgi22439 9 115150422 to 115150890 468 CpG island CpG island 22439
Cpgi22440 9 115151492 to 115151657 165 CpG island CpG island 22440
Tssr87588 9 115167243 to 115167245 2 + TSS region transcription start site region 87588
Gm4665 9 115180404 to 115186058 5654 - antisense lncRNA gene predicted gene 4665
Tssr91888 9 115186038 to 115186071 33 - TSS region transcription start site region 91888
Tssr3048 9 115186199 to 115186230 31 + TSS region transcription start site region 3048
Gm26962 9 115195453 to 115196898 1445 - antisense lncRNA gene predicted gene, 26962
Tssr87589 9 115200395 to 115200438 43 + TSS region transcription start site region 87589
Gm27002 9 115200398 to 115203875 3477 + sense intronic lncRNA gene predicted gene, 27002
Tssr87590 9 115200885 to 115200889 4 + TSS region transcription start site region 87590
Tssr87591 9 115216504 to 115216531 27 + TSS region transcription start site region 87591
Cpgi22441 9 115216550 to 115216751 201 CpG island CpG island 22441
2210411A11Rik 9 115232725 to 115233757 1032 unclassified gene RIKEN cDNA 2210411A11 gene
Stt3b 9 115242581 to 115310421 67840 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
Tssr91889 9 115243712 to 115243728 16 - TSS region transcription start site region 91889
Stmn1-rs1 9 115281520 to 115281981 461 - pseudogene stathmin 1, related sequence 1
Tssr91890 9 115282066 to 115282075 9 - TSS region transcription start site region 91890
Tssr91891 9 115293446 to 115293451 5 - TSS region transcription start site region 91891
Tssr91892 9 115298122 to 115298125 3 - TSS region transcription start site region 91892
Cpgi22442 9 115309254 to 115311128 1874 CpG island CpG island 22442
Gm9757 9 115309820 to 115312072 2252 unclassified gene predicted gene 9757
Tssr91893 9 115310057 to 115310065 8 - TSS region transcription start site region 91893
Tssr91894 9 115310072 to 115310094 22 - TSS region transcription start site region 91894
Tssr91895 9 115310100 to 115310157 57 - TSS region transcription start site region 91895
Tssr91896 9 115310165 to 115310181 16 - TSS region transcription start site region 91896
Tssr91897 9 115310239 to 115310250 11 - TSS region transcription start site region 91897
Tssr91898 9 115310285 to 115310296 11 - TSS region transcription start site region 91898
Tssr91899 9 115310400 to 115310407 7 - TSS region transcription start site region 91899
Tssr91900 9 115310425 to 115310447 22 - TSS region transcription start site region 91900
Tssr91901 9 115310459 to 115310484 25 - TSS region transcription start site region 91901
Tssr91902 9 115310511 to 115310520 9 - TSS region transcription start site region 91902
Tssr91903 9 115310538 to 115310549 11 - TSS region transcription start site region 91903