Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:113380179-113910290

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39437 9 113392473 to 113396139 3666 + lncRNA gene predicted gene, 39437
Gm22492 9 113403475 to 113403771 296 + unclassified non-coding RNA gene predicted gene, 22492
Gm36485 9 113406168 to 113410345 4177 - lincRNA gene predicted gene, 36485
Gm47875 9 113420111 to 113422536 2425 + lincRNA gene predicted gene, 47875
Gm39438 9 113444028 to 113456437 12409 + lncRNA gene predicted gene, 39438
Gm36540 9 113458799 to 113468592 9793 - lncRNA gene predicted gene, 36540
AU023762 9 113496746 to 113587152 90406 - lincRNA gene expressed sequence AU023762
Gm7183 9 113530229 to 113531233 1004 + pseudogene predicted gene 7183
D9Mit349 9 113559647 to 113559820 173 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 349
Gm36592 9 113614998 to 113622104 7106 - lncRNA gene predicted gene, 36592
Gm36686 9 113626508 to 113629024 2516 + lncRNA gene predicted gene, 36686
Gm36745 9 113636528 to 113642054 5526 - lincRNA gene predicted gene, 36745
D9Mit20 9 113645179 to 113645290 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 20
Pdcd6ip 9 113651744 to 113708259 56515 - protein coding gene programmed cell death 6 interacting protein
Tssr91821 9 113653574 to 113653599 25 - TSS region transcription start site region 91821
Tssr91822 9 113662356 to 113662386 30 - TSS region transcription start site region 91822
Tssr91823 9 113662500 to 113662520 20 - TSS region transcription start site region 91823
Tssr91824 9 113668048 to 113668070 22 - TSS region transcription start site region 91824
Tssr91825 9 113671795 to 113671816 21 - TSS region transcription start site region 91825
Cpgi22410 9 113707655 to 113708528 873 CpG island CpG island 22410
Tssr91826 9 113707677 to 113707701 24 - TSS region transcription start site region 91826
Tssr91827 9 113708181 to 113708197 16 - TSS region transcription start site region 91827
Tssr91828 9 113708209 to 113708258 49 - TSS region transcription start site region 91828
4933411B09Rik 9 113708852 to 113710291 1439 unclassified gene RIKEN cDNA 4933411B09 gene
Gm38623 9 113719250 to 113741054 21804 + lncRNA gene predicted gene, 38623
Tssr87524 9 113726414 to 113726420 6 + TSS region transcription start site region 87524
Cpgi22411 9 113740983 to 113742605 1622 CpG island CpG island 22411
Tssr87525 9 113741439 to 113741483 44 + TSS region transcription start site region 87525
Clasp2 9 113741473 to 113919682 178209 + protein coding gene CLIP associating protein 2
Tssr3044 9 113741519 to 113741524 5 + TSS region transcription start site region 3044
Tssr87526 9 113756340 to 113756353 13 + TSS region transcription start site region 87526
Tssr87527 9 113756391 to 113756447 56 + TSS region transcription start site region 87527
Tssr87528 9 113756724 to 113756751 27 + TSS region transcription start site region 87528
Tssr87529 9 113756825 to 113756844 19 + TSS region transcription start site region 87529
Gm25059 9 113776182 to 113776298 116 - snoRNA gene predicted gene, 25059
Tssr87530 9 113792735 to 113792752 17 + TSS region transcription start site region 87530
Tssr87531 9 113792831 to 113792842 11 + TSS region transcription start site region 87531
Tssr87532 9 113792981 to 113792992 11 + TSS region transcription start site region 87532
Tssr87533 9 113793028 to 113793069 41 + TSS region transcription start site region 87533
Tssr3045 9 113793294 to 113793301 7 + TSS region transcription start site region 3045
Tssr87534 9 113793316 to 113793340 24 + TSS region transcription start site region 87534
Tssr87535 9 113793347 to 113793358 11 + TSS region transcription start site region 87535
Tssr87536 9 113803381 to 113803403 22 + TSS region transcription start site region 87536
Tssr87537 9 113812547 to 113812621 74 + TSS region transcription start site region 87537
D9Mit246 9 113903371 to 113903508 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 246