Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:113277735-114307752

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr87522 9 113279295 to 113279300 5 + TSS region transcription start site region 87522
Gm36367 9 113295655 to 113310985 15330 + lincRNA gene predicted gene, 36367
Gm39436 9 113324251 to 113352369 28118 - lincRNA gene predicted gene, 39436
Tssr87523 9 113369003 to 113369004 1 + TSS region transcription start site region 87523
D9Dcr123 9 113374074 to 113374180 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 123
D9Mit243 9 113374087 to 113374180 93 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243
D9Mit243.2 9 113374157 to 113374294 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243.2
Gm39437 9 113392473 to 113396139 3666 + lncRNA gene predicted gene, 39437
Gm22492 9 113403475 to 113403771 296 + unclassified non-coding RNA gene predicted gene, 22492
Gm36485 9 113406168 to 113410345 4177 - lincRNA gene predicted gene, 36485
Gm47875 9 113420111 to 113422536 2425 + lincRNA gene predicted gene, 47875
Gm39438 9 113444028 to 113456437 12409 + lncRNA gene predicted gene, 39438
Gm36540 9 113458799 to 113468592 9793 - lncRNA gene predicted gene, 36540
AU023762 9 113496746 to 113587152 90406 - lincRNA gene expressed sequence AU023762
Gm7183 9 113530229 to 113531233 1004 + pseudogene predicted gene 7183
D9Mit349 9 113559647 to 113559820 173 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 349
Gm36592 9 113614998 to 113622104 7106 - lncRNA gene predicted gene, 36592
Gm36686 9 113626508 to 113629024 2516 + lncRNA gene predicted gene, 36686
Gm36745 9 113636528 to 113642054 5526 - lincRNA gene predicted gene, 36745
D9Mit20 9 113645179 to 113645290 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 20
Pdcd6ip 9 113651744 to 113708259 56515 - protein coding gene programmed cell death 6 interacting protein
Tssr91821 9 113653574 to 113653599 25 - TSS region transcription start site region 91821
Tssr91822 9 113662356 to 113662386 30 - TSS region transcription start site region 91822
Tssr91823 9 113662500 to 113662520 20 - TSS region transcription start site region 91823
Tssr91824 9 113668048 to 113668070 22 - TSS region transcription start site region 91824
Tssr91825 9 113671795 to 113671816 21 - TSS region transcription start site region 91825
Cpgi22410 9 113707655 to 113708528 873 CpG island CpG island 22410
Tssr91826 9 113707677 to 113707701 24 - TSS region transcription start site region 91826
Tssr91827 9 113708181 to 113708197 16 - TSS region transcription start site region 91827
Tssr91828 9 113708209 to 113708258 49 - TSS region transcription start site region 91828
4933411B09Rik 9 113708852 to 113710291 1439 unclassified gene RIKEN cDNA 4933411B09 gene
Gm38623 9 113719250 to 113741054 21804 + lncRNA gene predicted gene, 38623
Tssr87524 9 113726414 to 113726420 6 + TSS region transcription start site region 87524
Cpgi22411 9 113740983 to 113742605 1622 CpG island CpG island 22411
Tssr87525 9 113741439 to 113741483 44 + TSS region transcription start site region 87525
Clasp2 9 113741473 to 113919682 178209 + protein coding gene CLIP associating protein 2
Tssr3044 9 113741519 to 113741524 5 + TSS region transcription start site region 3044
Tssr87526 9 113756340 to 113756353 13 + TSS region transcription start site region 87526
Tssr87527 9 113756391 to 113756447 56 + TSS region transcription start site region 87527
Tssr87528 9 113756724 to 113756751 27 + TSS region transcription start site region 87528
Tssr87529 9 113756825 to 113756844 19 + TSS region transcription start site region 87529
Gm25059 9 113776182 to 113776298 116 - snoRNA gene predicted gene, 25059
Tssr87530 9 113792735 to 113792752 17 + TSS region transcription start site region 87530
Tssr87531 9 113792831 to 113792842 11 + TSS region transcription start site region 87531
Tssr87532 9 113792981 to 113792992 11 + TSS region transcription start site region 87532
Tssr87533 9 113793028 to 113793069 41 + TSS region transcription start site region 87533
Tssr3045 9 113793294 to 113793301 7 + TSS region transcription start site region 3045
Tssr87534 9 113793316 to 113793340 24 + TSS region transcription start site region 87534
Tssr87535 9 113793347 to 113793358 11 + TSS region transcription start site region 87535
Tssr87536 9 113803381 to 113803403 22 + TSS region transcription start site region 87536
Tssr87537 9 113812547 to 113812621 74 + TSS region transcription start site region 87537
D9Mit246 9 113903371 to 113903508 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 246
Cnes5 9 113917590 to 113917590 0 QTL C. neoformans susceptibility locus 5
Tssr87538 9 113919357 to 113919361 4 + TSS region transcription start site region 87538
Gm39439 9 113920602 to 113930840 10238 - lncRNA gene predicted gene, 39439
Cpgi22412 9 113930612 to 113932076 1464 CpG island CpG island 22412
Ubp1 9 113930934 to 113977202 46268 + protein coding gene upstream binding protein 1
Tssr87539 9 113930964 to 113930987 23 + TSS region transcription start site region 87539
Tssr87540 9 113930990 to 113931066 76 + TSS region transcription start site region 87540
Tssr87541 9 113931138 to 113931188 50 + TSS region transcription start site region 87541
Tssr87542 9 113931308 to 113931317 9 + TSS region transcription start site region 87542
Tssr91829 9 113955906 to 113955929 23 - TSS region transcription start site region 91829
Tssr87543 9 113955971 to 113955983 12 + TSS region transcription start site region 87543
Tssr87544 9 113955984 to 113956011 27 + TSS region transcription start site region 87544
Tssr87545 9 113956020 to 113956027 7 + TSS region transcription start site region 87545
Tssr87546 9 113956043 to 113956048 5 + TSS region transcription start site region 87546
Tssr87547 9 113956222 to 113956233 11 + TSS region transcription start site region 87547
Tssr87548 9 113956682 to 113956687 5 + TSS region transcription start site region 87548
Fbxl2 9 113958557 to 114026787 68230 - protein coding gene F-box and leucine-rich repeat protein 2
Tssr87549 9 113958697 to 113958712 15 + TSS region transcription start site region 87549
Tssr87550 9 113969209 to 113969216 7 + TSS region transcription start site region 87550
Tssr87551 9 113969221 to 113969229 8 + TSS region transcription start site region 87551
Tssr87552 9 113969236 to 113969252 16 + TSS region transcription start site region 87552
Gm47950 9 113969984 to 113970998 1014 - antisense lncRNA gene predicted gene, 47950
Tssr87553 9 113976287 to 113976314 27 + TSS region transcription start site region 87553
Gm36035 9 114004771 to 114005261 490 - pseudogene predicted gene, 36035
Cpgi22413 9 114010054 to 114010230 176 CpG island CpG island 22413
Cpgi22414 9 114011340 to 114011504 164 CpG island CpG island 22414
Cpgi22415 9 114026210 to 114026998 788 CpG island CpG island 22415
Tssr91830 9 114026711 to 114026764 53 - TSS region transcription start site region 91830
Gm36883 9 114050649 to 114057041 6392 - lncRNA gene predicted gene, 36883
Cpgi22416 9 114057125 to 114058143 1018 CpG island CpG island 22416
Susd5 9 114057354 to 114098733 41379 + protein coding gene sushi domain containing 5
Tssr87554 9 114057428 to 114057449 21 + TSS region transcription start site region 87554
Tssr87555 9 114057458 to 114057479 21 + TSS region transcription start site region 87555
Cpgi22417 9 114073828 to 114074056 228 CpG island CpG island 22417
Cpgi22418 9 114096540 to 114096954 414 CpG island CpG island 22418
Tssr3046 9 114118085 to 114118089 4 + TSS region transcription start site region 3046
Gm29825 9 114118088 to 114192640 74552 + lincRNA gene predicted gene, 29825
4921528I07Rik 9 114237697 to 114317028 79331 - unclassified non-coding RNA gene RIKEN cDNA 4921528I07 gene