Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:112215426-117335437

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435 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91789 9 112216544 to 112216563 19 - TSS region transcription start site region 91789
Tssr91790 9 112217318 to 112217337 19 - TSS region transcription start site region 91790
Tssr91791 9 112217344 to 112217355 11 - TSS region transcription start site region 91791
Tssr91792 9 112227205 to 112227217 12 - TSS region transcription start site region 91792
Tssr87515 9 112227427 to 112227442 15 + TSS region transcription start site region 87515
Tssr87516 9 112227443 to 112227461 18 + TSS region transcription start site region 87516
2310075C17Rik 9 112227579 to 112228242 663 + lincRNA gene RIKEN cDNA 2310075C17 gene
Tssr91793 9 112229985 to 112229996 11 - TSS region transcription start site region 91793
Tssr91794 9 112231169 to 112231184 15 - TSS region transcription start site region 91794
Tssr91795 9 112232368 to 112232386 18 - TSS region transcription start site region 91795
Tssr91796 9 112232407 to 112232422 15 - TSS region transcription start site region 91796
Tssr91797 9 112232449 to 112232460 11 - TSS region transcription start site region 91797
Tssr91798 9 112233119 to 112233128 9 - TSS region transcription start site region 91798
Tssr91799 9 112233240 to 112233254 14 - TSS region transcription start site region 91799
Tssr91800 9 112233255 to 112233269 14 - TSS region transcription start site region 91800
Tssr91801 9 112233274 to 112233286 12 - TSS region transcription start site region 91801
Tssr91802 9 112233312 to 112233323 11 - TSS region transcription start site region 91802
Tssr91803 9 112233379 to 112233412 33 - TSS region transcription start site region 91803
Tssr91804 9 112233551 to 112233570 19 - TSS region transcription start site region 91804
Tssr87517 9 112234233 to 112234251 18 + TSS region transcription start site region 87517
Tssr87518 9 112234257 to 112234313 56 + TSS region transcription start site region 87518
2900079G21Rik 9 112234277 to 112348925 114648 + lincRNA gene RIKEN cDNA 2900079G21 gene
Cpgi22409 9 112234345 to 112235763 1418 CpG island CpG island 22409
Tssr91805 9 112234591 to 112234619 28 - TSS region transcription start site region 91805
Tssr91806 9 112234627 to 112234644 17 - TSS region transcription start site region 91806
Tssr91807 9 112234808 to 112234822 14 - TSS region transcription start site region 91807
Tssr91808 9 112234830 to 112234858 28 - TSS region transcription start site region 91808
Tssr91809 9 112234884 to 112234903 19 - TSS region transcription start site region 91809
Tssr91810 9 112234956 to 112234967 11 - TSS region transcription start site region 91810
Tssr91811 9 112235142 to 112235196 54 - TSS region transcription start site region 91811
Tssr91812 9 112235452 to 112235502 50 - TSS region transcription start site region 91812
Tssr91813 9 112235511 to 112235536 25 - TSS region transcription start site region 91813
Tssr91814 9 112235830 to 112235842 12 - TSS region transcription start site region 91814
Tssr91815 9 112235854 to 112235865 11 - TSS region transcription start site region 91815
Tssr91816 9 112235889 to 112235894 5 - TSS region transcription start site region 91816
Tssr91817 9 112235900 to 112235911 11 - TSS region transcription start site region 91817
Tssr91818 9 112235919 to 112235933 14 - TSS region transcription start site region 91818
Tssr91819 9 112235940 to 112235946 6 - TSS region transcription start site region 91819
Tssr91820 9 112235966 to 112235975 9 - TSS region transcription start site region 91820
Tssr87519 9 112256292 to 112256341 49 + TSS region transcription start site region 87519
Gm39431 9 112308195 to 112415008 106813 + lncRNA gene predicted gene, 39431
Tssr3043 9 112308224 to 112308249 25 + TSS region transcription start site region 3043
4933411E02Rik 9 112390104 to 112461630 71526 - lincRNA gene RIKEN cDNA 4933411E02 gene
Gm27847 9 112489616 to 112489722 106 + miRNA gene predicted gene, 27847
Tssr87520 9 112505005 to 112505012 7 + TSS region transcription start site region 87520
Gm24957 9 112522529 to 112522660 131 + snoRNA gene predicted gene, 24957
D9Mit149 9 112754680 to 112754828 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 149
D9Mit213 9 112797624 to 112797815 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 213
Gm19022 9 112868889 to 112869458 569 - pseudogene predicted gene, 19022
D9Mit200 9 112872783 to 112872929 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 200
Psl5 9 112872929 to 94981301 -17891628 QTL promotion susceptibility QTL 5
Gm36251 9 113070983 to 113123029 52046 - lincRNA gene predicted gene, 36251
Tssr87521 9 113122492 to 113122514 22 + TSS region transcription start site region 87521
Gm46133 9 113141241 to 113153783 12542 + lncRNA gene predicted gene, 46133
Gm4657 9 113174608 to 113189815 15207 - lincRNA gene predicted gene 4657
Tssr87522 9 113279295 to 113279300 5 + TSS region transcription start site region 87522
Gm36367 9 113295655 to 113310985 15330 + lincRNA gene predicted gene, 36367
Gm39436 9 113324251 to 113352369 28118 - lincRNA gene predicted gene, 39436
Tssr87523 9 113369003 to 113369004 1 + TSS region transcription start site region 87523
D9Dcr123 9 113374074 to 113374180 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 123
D9Mit243 9 113374087 to 113374180 93 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243
D9Mit243.2 9 113374157 to 113374294 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243.2
Gm39437 9 113392473 to 113396139 3666 + lncRNA gene predicted gene, 39437
Gm22492 9 113403475 to 113403771 296 + unclassified non-coding RNA gene predicted gene, 22492
Gm36485 9 113406168 to 113410345 4177 - lincRNA gene predicted gene, 36485
Gm47875 9 113420111 to 113422536 2425 + lincRNA gene predicted gene, 47875
Gm39438 9 113444028 to 113456437 12409 + lncRNA gene predicted gene, 39438
Gm36540 9 113458799 to 113468592 9793 - lncRNA gene predicted gene, 36540
AU023762 9 113496746 to 113587152 90406 - lincRNA gene expressed sequence AU023762
Gm7183 9 113530229 to 113531233 1004 + pseudogene predicted gene 7183
D9Mit349 9 113559647 to 113559820 173 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 349
Gm36592 9 113614998 to 113622104 7106 - lncRNA gene predicted gene, 36592
Gm36686 9 113626508 to 113629024 2516 + lncRNA gene predicted gene, 36686
Gm36745 9 113636528 to 113642054 5526 - lincRNA gene predicted gene, 36745
D9Mit20 9 113645179 to 113645290 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 20
Pdcd6ip 9 113651744 to 113708259 56515 - protein coding gene programmed cell death 6 interacting protein
Tssr91821 9 113653574 to 113653599 25 - TSS region transcription start site region 91821
Tssr91822 9 113662356 to 113662386 30 - TSS region transcription start site region 91822
Tssr91823 9 113662500 to 113662520 20 - TSS region transcription start site region 91823
Tssr91824 9 113668048 to 113668070 22 - TSS region transcription start site region 91824
Tssr91825 9 113671795 to 113671816 21 - TSS region transcription start site region 91825
Cpgi22410 9 113707655 to 113708528 873 CpG island CpG island 22410
Tssr91826 9 113707677 to 113707701 24 - TSS region transcription start site region 91826
Tssr91827 9 113708181 to 113708197 16 - TSS region transcription start site region 91827
Tssr91828 9 113708209 to 113708258 49 - TSS region transcription start site region 91828
4933411B09Rik 9 113708852 to 113710291 1439 unclassified gene RIKEN cDNA 4933411B09 gene
Gm38623 9 113719250 to 113741054 21804 + lncRNA gene predicted gene, 38623
Tssr87524 9 113726414 to 113726420 6 + TSS region transcription start site region 87524
Cpgi22411 9 113740983 to 113742605 1622 CpG island CpG island 22411
Tssr87525 9 113741439 to 113741483 44 + TSS region transcription start site region 87525
Clasp2 9 113741473 to 113919682 178209 + protein coding gene CLIP associating protein 2
Tssr3044 9 113741519 to 113741524 5 + TSS region transcription start site region 3044
Tssr87526 9 113756340 to 113756353 13 + TSS region transcription start site region 87526
Tssr87527 9 113756391 to 113756447 56 + TSS region transcription start site region 87527
Tssr87528 9 113756724 to 113756751 27 + TSS region transcription start site region 87528
Tssr87529 9 113756825 to 113756844 19 + TSS region transcription start site region 87529
Gm25059 9 113776182 to 113776298 116 - snoRNA gene predicted gene, 25059
Tssr87530 9 113792735 to 113792752 17 + TSS region transcription start site region 87530
Tssr87531 9 113792831 to 113792842 11 + TSS region transcription start site region 87531
Tssr87532 9 113792981 to 113792992 11 + TSS region transcription start site region 87532
Tssr87533 9 113793028 to 113793069 41 + TSS region transcription start site region 87533
Tssr3045 9 113793294 to 113793301 7 + TSS region transcription start site region 3045
Tssr87534 9 113793316 to 113793340 24 + TSS region transcription start site region 87534
Tssr87535 9 113793347 to 113793358 11 + TSS region transcription start site region 87535
Tssr87536 9 113803381 to 113803403 22 + TSS region transcription start site region 87536
Tssr87537 9 113812547 to 113812621 74 + TSS region transcription start site region 87537
D9Mit246 9 113903371 to 113903508 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 246
Cnes5 9 113917590 to 113917590 0 QTL C. neoformans susceptibility locus 5
Tssr87538 9 113919357 to 113919361 4 + TSS region transcription start site region 87538
Gm39439 9 113920602 to 113930840 10238 - lncRNA gene predicted gene, 39439
Cpgi22412 9 113930612 to 113932076 1464 CpG island CpG island 22412
Ubp1 9 113930934 to 113977202 46268 + protein coding gene upstream binding protein 1
Tssr87539 9 113930964 to 113930987 23 + TSS region transcription start site region 87539
Tssr87540 9 113930990 to 113931066 76 + TSS region transcription start site region 87540
Tssr87541 9 113931138 to 113931188 50 + TSS region transcription start site region 87541
Tssr87542 9 113931308 to 113931317 9 + TSS region transcription start site region 87542
Tssr91829 9 113955906 to 113955929 23 - TSS region transcription start site region 91829
Tssr87543 9 113955971 to 113955983 12 + TSS region transcription start site region 87543
Tssr87544 9 113955984 to 113956011 27 + TSS region transcription start site region 87544
Tssr87545 9 113956020 to 113956027 7 + TSS region transcription start site region 87545
Tssr87546 9 113956043 to 113956048 5 + TSS region transcription start site region 87546
Tssr87547 9 113956222 to 113956233 11 + TSS region transcription start site region 87547
Tssr87548 9 113956682 to 113956687 5 + TSS region transcription start site region 87548
Fbxl2 9 113958557 to 114026787 68230 - protein coding gene F-box and leucine-rich repeat protein 2
Tssr87549 9 113958697 to 113958712 15 + TSS region transcription start site region 87549
Tssr87550 9 113969209 to 113969216 7 + TSS region transcription start site region 87550
Tssr87551 9 113969221 to 113969229 8 + TSS region transcription start site region 87551
Tssr87552 9 113969236 to 113969252 16 + TSS region transcription start site region 87552
Gm47950 9 113969984 to 113970998 1014 - antisense lncRNA gene predicted gene, 47950
Tssr87553 9 113976287 to 113976314 27 + TSS region transcription start site region 87553
Gm36035 9 114004771 to 114005261 490 - pseudogene predicted gene, 36035
Cpgi22413 9 114010054 to 114010230 176 CpG island CpG island 22413
Cpgi22414 9 114011340 to 114011504 164 CpG island CpG island 22414
Cpgi22415 9 114026210 to 114026998 788 CpG island CpG island 22415
Tssr91830 9 114026711 to 114026764 53 - TSS region transcription start site region 91830
Gm36883 9 114050649 to 114057041 6392 - lncRNA gene predicted gene, 36883
Cpgi22416 9 114057125 to 114058143 1018 CpG island CpG island 22416
Susd5 9 114057354 to 114098733 41379 + protein coding gene sushi domain containing 5
Tssr87554 9 114057428 to 114057449 21 + TSS region transcription start site region 87554
Tssr87555 9 114057458 to 114057479 21 + TSS region transcription start site region 87555
Cpgi22417 9 114073828 to 114074056 228 CpG island CpG island 22417
Cpgi22418 9 114096540 to 114096954 414 CpG island CpG island 22418
Tssr3046 9 114118085 to 114118089 4 + TSS region transcription start site region 3046
Gm29825 9 114118088 to 114192640 74552 + lincRNA gene predicted gene, 29825
4921528I07Rik 9 114237697 to 114317028 79331 - unclassified non-coding RNA gene RIKEN cDNA 4921528I07 gene
Bcl2a1c 9 114330135 to 114330578 443 + protein coding gene B cell leukemia/lymphoma 2 related protein A1c
4930525D18Rik 9 114341111 to 114364627 23516 - lncRNA gene RIKEN cDNA 4930525D18 gene
Tssr3047 9 114363955 to 114364002 47 - TSS region transcription start site region 3047
Tssr91831 9 114365661 to 114365686 25 - TSS region transcription start site region 91831
4933421H06Rik 9 114366495 to 114368229 1734 unclassified gene RIKEN cDNA 4933421H06 gene
Cpgi22419 9 114367861 to 114368695 834 CpG island CpG island 22419
Tssr91832 9 114368221 to 114368245 24 - TSS region transcription start site region 91832
4930520O04Rik 9 114368324 to 114377238 8914 + lncRNA gene RIKEN cDNA 4930520O04 gene
Tssr87556 9 114368468 to 114368476 8 + TSS region transcription start site region 87556
Crtap 9 114375134 to 114390675 15541 - protein coding gene cartilage associated protein
Cpgi22420 9 114384668 to 114385018 350 CpG island CpG island 22420
Cpgi22421 9 114389729 to 114391103 1374 CpG island CpG island 22421
Tssr87557 9 114390153 to 114390167 14 + TSS region transcription start site region 87557
Tssr91833 9 114390633 to 114390687 54 - TSS region transcription start site region 91833
Cpgi22422 9 114400878 to 114402032 1154 CpG island CpG island 22422
Glb1 9 114401078 to 114474379 73301 + protein coding gene galactosidase, beta 1
Tssr87558 9 114401092 to 114401133 41 + TSS region transcription start site region 87558
Tmppe 9 114401105 to 114407276 6171 + protein coding gene transmembrane protein with metallophosphoesterase domain
Tssr87559 9 114401139 to 114401155 16 + TSS region transcription start site region 87559
Tssr87560 9 114401447 to 114401474 27 + TSS region transcription start site region 87560
Tssr87561 9 114401477 to 114401495 18 + TSS region transcription start site region 87561
Tssr87562 9 114401501 to 114401515 14 + TSS region transcription start site region 87562
Tssr87563 9 114411011 to 114411015 4 + TSS region transcription start site region 87563
Tssr91834 9 114417599 to 114417642 43 - TSS region transcription start site region 91834
Tssr87564 9 114418443 to 114418479 36 + TSS region transcription start site region 87564
Tssr87565 9 114422128 to 114422131 3 + TSS region transcription start site region 87565
Mdq9 9 114428637 to 114428637 0 QTL mammary ductal QTL 9
Tssr87566 9 114440854 to 114440865 11 + TSS region transcription start site region 87566
Gm30254 9 114450679 to 114461047 10368 - lncRNA gene predicted gene, 30254
Tssr91835 9 114461725 to 114461739 14 - TSS region transcription start site region 91835
El1 9 114474379 to 75775364 -38699015 QTL epilepsy 1
El7 9 114474379 to 75775364 -38699015 QTL epilepsy 7
Ccr4 9 114490316 to 114504916 14600 - protein coding gene chemokine (C-C motif) receptor 4
Tssr91836 9 114496537 to 114496551 14 - TSS region transcription start site region 91836
Tssr91837 9 114496571 to 114496581 10 - TSS region transcription start site region 91837
Tssr91838 9 114496596 to 114496605 9 - TSS region transcription start site region 91838
Tssr91839 9 114496609 to 114496620 11 - TSS region transcription start site region 91839
Tssr91840 9 114497337 to 114497351 14 - TSS region transcription start site region 91840
Tssr91841 9 114501213 to 114501254 41 - TSS region transcription start site region 91841
Trim71 9 114511268 to 114564369 53101 - protein coding gene tripartite motif-containing 71
Tssr91842 9 114512439 to 114512443 4 - TSS region transcription start site region 91842
C130032M10Rik 9 114515697 to 114516424 727 + protein coding gene RIKEN cDNA C130032M10 gene
Tssr87567 9 114515713 to 114515750 37 + TSS region transcription start site region 87567
Tssr91843 9 114520614 to 114520620 6 - TSS region transcription start site region 91843
Cpgi22423 9 114560941 to 114561701 760 CpG island CpG island 22423
Cpgi22424 9 114562125 to 114564585 2460 CpG island CpG island 22424
Tssr91844 9 114563242 to 114563253 11 - TSS region transcription start site region 91844
Tssr91845 9 114563269 to 114563283 14 - TSS region transcription start site region 91845
Tssr91846 9 114563287 to 114563303 16 - TSS region transcription start site region 91846
Tssr91847 9 114564086 to 114564103 17 - TSS region transcription start site region 91847
Tssr91848 9 114564197 to 114564209 12 - TSS region transcription start site region 91848
Tssr91849 9 114564288 to 114564295 7 - TSS region transcription start site region 91849
Tssr91850 9 114564315 to 114564334 19 - TSS region transcription start site region 91850
Tssr91851 9 114564338 to 114564349 11 - TSS region transcription start site region 91851