Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:112178889-113559458

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91777 9 112179318 to 112179322 4 - TSS region transcription start site region 91777
Tssr91778 9 112185781 to 112185791 10 - TSS region transcription start site region 91778
Tssr91779 9 112185929 to 112185936 7 - TSS region transcription start site region 91779
Tssr91780 9 112185939 to 112185955 16 - TSS region transcription start site region 91780
Tssr91781 9 112185956 to 112185967 11 - TSS region transcription start site region 91781
Tssr91782 9 112187821 to 112187862 41 - TSS region transcription start site region 91782
Tssr91783 9 112187875 to 112187878 3 - TSS region transcription start site region 91783
Tssr91784 9 112187898 to 112187938 40 - TSS region transcription start site region 91784
Tssr91785 9 112199906 to 112199915 9 - TSS region transcription start site region 91785
Tssr91786 9 112200017 to 112200028 11 - TSS region transcription start site region 91786
Tssr91787 9 112200247 to 112200249 2 - TSS region transcription start site region 91787
Tssr91788 9 112211751 to 112211753 2 - TSS region transcription start site region 91788
Tssr91789 9 112216544 to 112216563 19 - TSS region transcription start site region 91789
Tssr91790 9 112217318 to 112217337 19 - TSS region transcription start site region 91790
Tssr91791 9 112217344 to 112217355 11 - TSS region transcription start site region 91791
Tssr91792 9 112227205 to 112227217 12 - TSS region transcription start site region 91792
Tssr87515 9 112227427 to 112227442 15 + TSS region transcription start site region 87515
Tssr87516 9 112227443 to 112227461 18 + TSS region transcription start site region 87516
2310075C17Rik 9 112227579 to 112228242 663 + lincRNA gene RIKEN cDNA 2310075C17 gene
Tssr91793 9 112229985 to 112229996 11 - TSS region transcription start site region 91793
Tssr91794 9 112231169 to 112231184 15 - TSS region transcription start site region 91794
Tssr91795 9 112232368 to 112232386 18 - TSS region transcription start site region 91795
Tssr91796 9 112232407 to 112232422 15 - TSS region transcription start site region 91796
Tssr91797 9 112232449 to 112232460 11 - TSS region transcription start site region 91797
Tssr91798 9 112233119 to 112233128 9 - TSS region transcription start site region 91798
Tssr91799 9 112233240 to 112233254 14 - TSS region transcription start site region 91799
Tssr91800 9 112233255 to 112233269 14 - TSS region transcription start site region 91800
Tssr91801 9 112233274 to 112233286 12 - TSS region transcription start site region 91801
Tssr91802 9 112233312 to 112233323 11 - TSS region transcription start site region 91802
Tssr91803 9 112233379 to 112233412 33 - TSS region transcription start site region 91803
Tssr91804 9 112233551 to 112233570 19 - TSS region transcription start site region 91804
Tssr87517 9 112234233 to 112234251 18 + TSS region transcription start site region 87517
Tssr87518 9 112234257 to 112234313 56 + TSS region transcription start site region 87518
2900079G21Rik 9 112234277 to 112348925 114648 + lincRNA gene RIKEN cDNA 2900079G21 gene
Cpgi22409 9 112234345 to 112235763 1418 CpG island CpG island 22409
Tssr91805 9 112234591 to 112234619 28 - TSS region transcription start site region 91805
Tssr91806 9 112234627 to 112234644 17 - TSS region transcription start site region 91806
Tssr91807 9 112234808 to 112234822 14 - TSS region transcription start site region 91807
Tssr91808 9 112234830 to 112234858 28 - TSS region transcription start site region 91808
Tssr91809 9 112234884 to 112234903 19 - TSS region transcription start site region 91809
Tssr91810 9 112234956 to 112234967 11 - TSS region transcription start site region 91810
Tssr91811 9 112235142 to 112235196 54 - TSS region transcription start site region 91811
Tssr91812 9 112235452 to 112235502 50 - TSS region transcription start site region 91812
Tssr91813 9 112235511 to 112235536 25 - TSS region transcription start site region 91813
Tssr91814 9 112235830 to 112235842 12 - TSS region transcription start site region 91814
Tssr91815 9 112235854 to 112235865 11 - TSS region transcription start site region 91815
Tssr91816 9 112235889 to 112235894 5 - TSS region transcription start site region 91816
Tssr91817 9 112235900 to 112235911 11 - TSS region transcription start site region 91817
Tssr91818 9 112235919 to 112235933 14 - TSS region transcription start site region 91818
Tssr91819 9 112235940 to 112235946 6 - TSS region transcription start site region 91819
Tssr91820 9 112235966 to 112235975 9 - TSS region transcription start site region 91820
Tssr87519 9 112256292 to 112256341 49 + TSS region transcription start site region 87519
Gm39431 9 112308195 to 112415008 106813 + lncRNA gene predicted gene, 39431
Tssr3043 9 112308224 to 112308249 25 + TSS region transcription start site region 3043
4933411E02Rik 9 112390104 to 112461630 71526 - lincRNA gene RIKEN cDNA 4933411E02 gene
Gm27847 9 112489616 to 112489722 106 + miRNA gene predicted gene, 27847
Tssr87520 9 112505005 to 112505012 7 + TSS region transcription start site region 87520
Gm24957 9 112522529 to 112522660 131 + snoRNA gene predicted gene, 24957
D9Mit149 9 112754680 to 112754828 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 149
D9Mit213 9 112797624 to 112797815 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 213
Gm19022 9 112868889 to 112869458 569 - pseudogene predicted gene, 19022
D9Mit200 9 112872783 to 112872929 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 200
Psl5 9 112872929 to 94981301 -17891628 QTL promotion susceptibility QTL 5
Gm36251 9 113070983 to 113123029 52046 - lincRNA gene predicted gene, 36251
Tssr87521 9 113122492 to 113122514 22 + TSS region transcription start site region 87521
Gm46133 9 113141241 to 113153783 12542 + lncRNA gene predicted gene, 46133
Gm4657 9 113174608 to 113189815 15207 - lincRNA gene predicted gene 4657
Tssr87522 9 113279295 to 113279300 5 + TSS region transcription start site region 87522
Gm36367 9 113295655 to 113310985 15330 + lincRNA gene predicted gene, 36367
Gm39436 9 113324251 to 113352369 28118 - lincRNA gene predicted gene, 39436
Tssr87523 9 113369003 to 113369004 1 + TSS region transcription start site region 87523
D9Dcr123 9 113374074 to 113374180 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 123
D9Mit243 9 113374087 to 113374180 93 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243
D9Mit243.2 9 113374157 to 113374294 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 243.2
Gm39437 9 113392473 to 113396139 3666 + lncRNA gene predicted gene, 39437
Gm22492 9 113403475 to 113403771 296 + unclassified non-coding RNA gene predicted gene, 22492
Gm36485 9 113406168 to 113410345 4177 - lincRNA gene predicted gene, 36485
Gm47875 9 113420111 to 113422536 2425 + lincRNA gene predicted gene, 47875
Gm39438 9 113444028 to 113456437 12409 + lncRNA gene predicted gene, 39438
Gm36540 9 113458799 to 113468592 9793 - lncRNA gene predicted gene, 36540
AU023762 9 113496746 to 113587152 90406 - lincRNA gene expressed sequence AU023762
Gm7183 9 113530229 to 113531233 1004 + pseudogene predicted gene 7183