Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:111469474-112089569

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25 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719
D9Dcr122 9 111779474 to 111779569 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 122
Tssr87514 9 111885290 to 111885293 3 + TSS region transcription start site region 87514
4930545L08Rik 9 111912311 to 111918666 6355 - lincRNA gene RIKEN cDNA 4930545L08 gene
Gm39430 9 111975467 to 111978001 2534 - lncRNA gene predicted gene, 39430
Tssr91720 9 111977877 to 111977904 27 - TSS region transcription start site region 91720
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91721 9 112073868 to 112073879 11 - TSS region transcription start site region 91721
Tssr91722 9 112077912 to 112077952 40 - TSS region transcription start site region 91722
Tssr91723 9 112087747 to 112087765 18 - TSS region transcription start site region 91723