Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:111419474-112139569

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22404 9 111438479 to 111438663 184 CpG island CpG island 22404
Cpgi22405 9 111438788 to 111439605 817 CpG island CpG island 22405
Tssr87511 9 111439063 to 111439097 34 + TSS region transcription start site region 87511
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Tssr87512 9 111439098 to 111439133 35 + TSS region transcription start site region 87512
Tssr91716 9 111461629 to 111461633 4 - TSS region transcription start site region 91716
Cpgi22406 9 111467575 to 111467872 297 CpG island CpG island 22406
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719
D9Dcr122 9 111779474 to 111779569 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 122
Tssr87514 9 111885290 to 111885293 3 + TSS region transcription start site region 87514
4930545L08Rik 9 111912311 to 111918666 6355 - lincRNA gene RIKEN cDNA 4930545L08 gene
Gm39430 9 111975467 to 111978001 2534 - lncRNA gene predicted gene, 39430
Tssr91720 9 111977877 to 111977904 27 - TSS region transcription start site region 91720
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91721 9 112073868 to 112073879 11 - TSS region transcription start site region 91721
Tssr91722 9 112077912 to 112077952 40 - TSS region transcription start site region 91722
Tssr91723 9 112087747 to 112087765 18 - TSS region transcription start site region 91723
Tssr91724 9 112092634 to 112092649 15 - TSS region transcription start site region 91724
Tssr91725 9 112095126 to 112095139 13 - TSS region transcription start site region 91725
Tssr91726 9 112097666 to 112097715 49 - TSS region transcription start site region 91726
Tssr91727 9 112097745 to 112097755 10 - TSS region transcription start site region 91727
Tssr91728 9 112097821 to 112097836 15 - TSS region transcription start site region 91728
Tssr91729 9 112097969 to 112097978 9 - TSS region transcription start site region 91729
Tssr91730 9 112098003 to 112098012 9 - TSS region transcription start site region 91730
Tssr91731 9 112098071 to 112098085 14 - TSS region transcription start site region 91731
Tssr91732 9 112099201 to 112099225 24 - TSS region transcription start site region 91732
Tssr91733 9 112099235 to 112099249 14 - TSS region transcription start site region 91733
Tssr91734 9 112099278 to 112099289 11 - TSS region transcription start site region 91734
Tssr91735 9 112099326 to 112099338 12 - TSS region transcription start site region 91735
Tssr91736 9 112099457 to 112099468 11 - TSS region transcription start site region 91736
Tssr91737 9 112099991 to 112100006 15 - TSS region transcription start site region 91737
Tssr91738 9 112101686 to 112101689 3 - TSS region transcription start site region 91738
Tssr91739 9 112104962 to 112104966 4 - TSS region transcription start site region 91739
Tssr91740 9 112108042 to 112108056 14 - TSS region transcription start site region 91740
Tssr91741 9 112108136 to 112108154 18 - TSS region transcription start site region 91741
Tssr91742 9 112113767 to 112113804 37 - TSS region transcription start site region 91742
Tssr91743 9 112113864 to 112113871 7 - TSS region transcription start site region 91743
Tssr91744 9 112113952 to 112113964 12 - TSS region transcription start site region 91744
Mir128-2 9 112118636 to 112118711 75 - miRNA gene microRNA 128-2
Tssr91745 9 112118640 to 112118643 3 - TSS region transcription start site region 91745
Tssr91746 9 112120174 to 112120188 14 - TSS region transcription start site region 91746
Tssr91747 9 112120583 to 112120589 6 - TSS region transcription start site region 91747
Tssr91748 9 112121333 to 112121346 13 - TSS region transcription start site region 91748
Tssr91749 9 112121373 to 112121384 11 - TSS region transcription start site region 91749
Tssr91750 9 112124353 to 112124381 28 - TSS region transcription start site region 91750
Tssr91751 9 112124412 to 112124424 12 - TSS region transcription start site region 91751
Tssr91752 9 112124762 to 112124772 10 - TSS region transcription start site region 91752
Tssr91753 9 112124824 to 112124833 9 - TSS region transcription start site region 91753
Tssr91754 9 112126805 to 112126808 3 - TSS region transcription start site region 91754
Tssr91755 9 112139066 to 112139077 11 - TSS region transcription start site region 91755
Tssr91756 9 112139344 to 112139365 21 - TSS region transcription start site region 91756
Tssr91757 9 112139427 to 112139438 11 - TSS region transcription start site region 91757