Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:111354004-111738940

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trank1 9 111311739 to 111395775 84036 + protein coding gene tetratricopeptide repeat and ankyrin repeat containing 1
D9Mit350 9 111360411 to 111360536 125 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 350
D9Dcr119 9 111360416 to 111360516 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 119
D9Dcr120 9 111407230 to 111407325 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 120
D9Mit185 9 111410536 to 111410667 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 185
Gm42527 9 111411434 to 111412913 1479 + unclassified gene predicted gene 42527
D9Dcr121 9 111415077 to 111415182 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 121
Cpgi22404 9 111438479 to 111438663 184 CpG island CpG island 22404
Cpgi22405 9 111438788 to 111439605 817 CpG island CpG island 22405
Tssr87511 9 111439063 to 111439097 34 + TSS region transcription start site region 87511
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Tssr87512 9 111439098 to 111439133 35 + TSS region transcription start site region 87512
Tssr91716 9 111461629 to 111461633 4 - TSS region transcription start site region 91716
Cpgi22406 9 111467575 to 111467872 297 CpG island CpG island 22406
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719