Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:111133898-112094015

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrfip2 9 111117592 to 111225668 108076 + protein coding gene leucine rich repeat (in FLII) interacting protein 2
Tssr87483 9 111146695 to 111146724 29 + TSS region transcription start site region 87483
Tssr87484 9 111148033 to 111148039 6 + TSS region transcription start site region 87484
Tssr87485 9 111152095 to 111152096 1 + TSS region transcription start site region 87485
Tssr87486 9 111168741 to 111168751 10 + TSS region transcription start site region 87486
Tssr87487 9 111174210 to 111174219 9 + TSS region transcription start site region 87487
Tssr87488 9 111182300 to 111182306 6 + TSS region transcription start site region 87488
Tssr87489 9 111182320 to 111182336 16 + TSS region transcription start site region 87489
Tssr87490 9 111185185 to 111185197 12 + TSS region transcription start site region 87490
Tssr87491 9 111205742 to 111205749 7 + TSS region transcription start site region 87491
Tssr87492 9 111205763 to 111205780 17 + TSS region transcription start site region 87492
Tssr87493 9 111211412 to 111211416 4 + TSS region transcription start site region 87493
Tssr3041 9 111216718 to 111216722 4 + TSS region transcription start site region 3041
Tssr87494 9 111224579 to 111224585 6 + TSS region transcription start site region 87494
Mlh1 9 111228228 to 111271786 43558 - protein coding gene mutL homolog 1
Gm24860 9 111244592 to 111244867 275 - unclassified non-coding RNA gene predicted gene, 24860
Cpgi22401 9 111271016 to 111272743 1727 CpG island CpG island 22401
Tssr91714 9 111271522 to 111271562 40 - TSS region transcription start site region 91714
Tssr91715 9 111271568 to 111271591 23 - TSS region transcription start site region 91715
Tssr87495 9 111271812 to 111271823 11 + TSS region transcription start site region 87495
Tssr87496 9 111271832 to 111271914 82 + TSS region transcription start site region 87496
Tssr87497 9 111271920 to 111271943 23 + TSS region transcription start site region 87497
Epm2aip1 9 111271929 to 111279093 7164 + protein coding gene EPM2A (laforin) interacting protein 1
Tssr87498 9 111271950 to 111271963 13 + TSS region transcription start site region 87498
Tssr87499 9 111275749 to 111275770 21 + TSS region transcription start site region 87499
Tssr87500 9 111289898 to 111289907 9 + TSS region transcription start site region 87500
Cpgi22402 9 111289930 to 111290319 389 CpG island CpG island 22402
Gm40580 9 111292394 to 111293173 779 - lncRNA gene predicted gene, 40580
Cpgi22403 9 111311096 to 111313067 1971 CpG island CpG island 22403
Tssr87501 9 111311539 to 111311551 12 + TSS region transcription start site region 87501
Tssr87502 9 111311567 to 111311586 19 + TSS region transcription start site region 87502
Tssr87503 9 111311674 to 111311758 84 + TSS region transcription start site region 87503
Trank1 9 111311739 to 111395775 84036 + protein coding gene tetratricopeptide repeat and ankyrin repeat containing 1
Tssr87504 9 111311770 to 111311796 26 + TSS region transcription start site region 87504
Tssr87505 9 111311804 to 111311840 36 + TSS region transcription start site region 87505
Tssr87506 9 111312108 to 111312121 13 + TSS region transcription start site region 87506
Tssr87507 9 111351851 to 111351870 19 + TSS region transcription start site region 87507
Tssr87508 9 111351872 to 111351897 25 + TSS region transcription start site region 87508
Tssr87509 9 111351909 to 111351922 13 + TSS region transcription start site region 87509
Tssr87510 9 111351961 to 111351970 9 + TSS region transcription start site region 87510
D9Mit350 9 111360411 to 111360536 125 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 350
D9Dcr119 9 111360416 to 111360516 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 119
D9Dcr120 9 111407230 to 111407325 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 120
D9Mit185 9 111410536 to 111410667 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 185
Gm42527 9 111411434 to 111412913 1479 + unclassified gene predicted gene 42527
D9Dcr121 9 111415077 to 111415182 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 121
Cpgi22404 9 111438479 to 111438663 184 CpG island CpG island 22404
Cpgi22405 9 111438788 to 111439605 817 CpG island CpG island 22405
Tssr87511 9 111439063 to 111439097 34 + TSS region transcription start site region 87511
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Tssr87512 9 111439098 to 111439133 35 + TSS region transcription start site region 87512
Tssr91716 9 111461629 to 111461633 4 - TSS region transcription start site region 91716
Cpgi22406 9 111467575 to 111467872 297 CpG island CpG island 22406
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719
D9Dcr122 9 111779474 to 111779569 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 122
Tssr87514 9 111885290 to 111885293 3 + TSS region transcription start site region 87514
4930545L08Rik 9 111912311 to 111918666 6355 - lincRNA gene RIKEN cDNA 4930545L08 gene
Gm39430 9 111975467 to 111978001 2534 - lncRNA gene predicted gene, 39430
Tssr91720 9 111977877 to 111977904 27 - TSS region transcription start site region 91720
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91721 9 112073868 to 112073879 11 - TSS region transcription start site region 91721
Tssr91722 9 112077912 to 112077952 40 - TSS region transcription start site region 91722
Tssr91723 9 112087747 to 112087765 18 - TSS region transcription start site region 91723
Tssr91724 9 112092634 to 112092649 15 - TSS region transcription start site region 91724