Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:110948898-112279015

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293 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
cir 9 108641085 to 111021636 2380551 heritable phenotypic marker circling
Lrrc2 9 110951545 to 110984066 32521 + protein coding gene leucine rich repeat containing 2
Tssr87439 9 110951727 to 110951745 18 + TSS region transcription start site region 87439
Tssr87440 9 110953153 to 110953176 23 + TSS region transcription start site region 87440
Tssr87441 9 110953437 to 110953439 2 + TSS region transcription start site region 87441
Tssr87442 9 110953693 to 110953702 9 + TSS region transcription start site region 87442
Cpgi22398 9 110953694 to 110954489 795 CpG island CpG island 22398
Tssr87443 9 110953726 to 110953756 30 + TSS region transcription start site region 87443
Tssr87444 9 110953758 to 110953787 29 + TSS region transcription start site region 87444
Tssr87445 9 110953789 to 110953807 18 + TSS region transcription start site region 87445
Tssr87446 9 110953808 to 110953863 55 + TSS region transcription start site region 87446
Tssr87447 9 110960452 to 110960477 25 + TSS region transcription start site region 87447
Tssr87448 9 110960826 to 110960838 12 + TSS region transcription start site region 87448
Tssr87449 9 110960843 to 110960874 31 + TSS region transcription start site region 87449
Tssr87450 9 110960889 to 110960896 7 + TSS region transcription start site region 87450
Tssr87451 9 110960927 to 110960941 14 + TSS region transcription start site region 87451
Tssr87452 9 110965256 to 110965278 22 + TSS region transcription start site region 87452
Gm43535 9 110974432 to 110974595 163 + unclassified gene predicted gene 43535
Rtp3 9 110984938 to 110990583 5645 - protein coding gene receptor transporter protein 3
1700061E17Rik 9 110986201 to 110987804 1603 + antisense lncRNA gene RIKEN cDNA 1700061E17 gene
Gm10030 9 110989499 to 111008029 18530 + unclassified non-coding RNA gene predicted gene 10030
Tssr91670 9 110989712 to 110989728 16 - TSS region transcription start site region 91670
Tssr91671 9 110989735 to 110989748 13 - TSS region transcription start site region 91671
Tssr91672 9 110990330 to 110990344 14 - TSS region transcription start site region 91672
Tssr91673 9 110990451 to 110990466 15 - TSS region transcription start site region 91673
Tssr91674 9 110990570 to 110990599 29 - TSS region transcription start site region 91674
Tssr87453 9 110992772 to 110992794 22 + TSS region transcription start site region 87453
Tssr87454 9 110992815 to 110992820 5 + TSS region transcription start site region 87454
Tssr91675 9 111001891 to 111001897 6 - TSS region transcription start site region 91675
Tssr87455 9 111009121 to 111009129 8 + TSS region transcription start site region 87455
Tssr91676 9 111017160 to 111017167 7 - TSS region transcription start site region 91676
Tssr87456 9 111019284 to 111019298 14 + TSS region transcription start site region 87456
Ltf 9 111019292 to 111042766 23474 + protein coding gene lactotransferrin
Tssr87457 9 111020943 to 111020960 17 + TSS region transcription start site region 87457
D9Mit38 9 111021446 to 111021636 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 38
Tssr87458 9 111021972 to 111021991 19 + TSS region transcription start site region 87458
Tssr87459 9 111022390 to 111022401 11 + TSS region transcription start site region 87459
Tssr3037 9 111023549 to 111023592 43 + TSS region transcription start site region 3037
Tssr87460 9 111024382 to 111024392 10 + TSS region transcription start site region 87460
Tssr3038 9 111024467 to 111024486 19 + TSS region transcription start site region 3038
Tssr87461 9 111025035 to 111025048 13 + TSS region transcription start site region 87461
Tssr87462 9 111025120 to 111025131 11 + TSS region transcription start site region 87462
Tssr3039 9 111026060 to 111026082 22 - TSS region transcription start site region 3039
Tssr87463 9 111027330 to 111027339 9 + TSS region transcription start site region 87463
Tssr87464 9 111027358 to 111027372 14 + TSS region transcription start site region 87464
Tssr87465 9 111029594 to 111029604 10 + TSS region transcription start site region 87465
Tssr91677 9 111031095 to 111031104 9 - TSS region transcription start site region 91677
Tssr87466 9 111032982 to 111032991 9 + TSS region transcription start site region 87466
Tssr87467 9 111035737 to 111035750 13 + TSS region transcription start site region 87467
Tssr87468 9 111038729 to 111038736 7 + TSS region transcription start site region 87468
Tssr87469 9 111038742 to 111038750 8 + TSS region transcription start site region 87469
Tssr87470 9 111038889 to 111038901 12 + TSS region transcription start site region 87470
Tssr91678 9 111042310 to 111042323 13 - TSS region transcription start site region 91678
Gm43814 9 111052781 to 111053193 412 - unclassified gene predicted gene 43814
Tssr91679 9 111053619 to 111053639 20 - TSS region transcription start site region 91679
Tssr91680 9 111053653 to 111053674 21 - TSS region transcription start site region 91680
Tssr91681 9 111053833 to 111053848 15 - TSS region transcription start site region 91681
Tssr91682 9 111053877 to 111053889 12 - TSS region transcription start site region 91682
Tssr91683 9 111053934 to 111053957 23 - TSS region transcription start site region 91683
Ccrl2 9 111054834 to 111057518 2684 - protein coding gene chemokine (C-C motif) receptor-like 2
Tssr91684 9 111055004 to 111055016 12 - TSS region transcription start site region 91684
Tssr91685 9 111055137 to 111055154 17 - TSS region transcription start site region 91685
Tssr91686 9 111055253 to 111055265 12 - TSS region transcription start site region 91686
Tssr91687 9 111055432 to 111055441 9 - TSS region transcription start site region 91687
Tssr91688 9 111055547 to 111055559 12 - TSS region transcription start site region 91688
Tssr91689 9 111055653 to 111055665 12 - TSS region transcription start site region 91689
Tssr91690 9 111055673 to 111055687 14 - TSS region transcription start site region 91690
Tssr91691 9 111055709 to 111055729 20 - TSS region transcription start site region 91691
Tssr91692 9 111055936 to 111055956 20 - TSS region transcription start site region 91692
Tssr91693 9 111055958 to 111055980 22 - TSS region transcription start site region 91693
Tssr91694 9 111055986 to 111056018 32 - TSS region transcription start site region 91694
Tssr91695 9 111056069 to 111056099 30 - TSS region transcription start site region 91695
Tssr91696 9 111056266 to 111056287 21 - TSS region transcription start site region 91696
Tssr91697 9 111056296 to 111056338 42 - TSS region transcription start site region 91697
Tssr91698 9 111056367 to 111056397 30 - TSS region transcription start site region 91698
Tssr91699 9 111056412 to 111056470 58 - TSS region transcription start site region 91699
Tssr91700 9 111056484 to 111056499 15 - TSS region transcription start site region 91700
Tssr91701 9 111056584 to 111056607 23 - TSS region transcription start site region 91701
Tssr91702 9 111056840 to 111056893 53 - TSS region transcription start site region 91702
Tssr91703 9 111056900 to 111056915 15 - TSS region transcription start site region 91703
Tssr91704 9 111057190 to 111057233 43 - TSS region transcription start site region 91704
Tssr91705 9 111057235 to 111057252 17 - TSS region transcription start site region 91705
Tssr87471 9 111057354 to 111057376 22 + TSS region transcription start site region 87471
Tssr91706 9 111057422 to 111057435 13 - TSS region transcription start site region 91706
Tssr91707 9 111057456 to 111057485 29 - TSS region transcription start site region 91707
Tssr91708 9 111057489 to 111057506 17 - TSS region transcription start site region 91708
Tssr91709 9 111057508 to 111057523 15 - TSS region transcription start site region 91709
Tssr87472 9 111058107 to 111058116 9 + TSS region transcription start site region 87472
Tssr87473 9 111058126 to 111058185 59 + TSS region transcription start site region 87473
Tssr87474 9 111058190 to 111058202 12 + TSS region transcription start site region 87474
Tssr87475 9 111058231 to 111058240 9 + TSS region transcription start site region 87475
Tssr87476 9 111059592 to 111059609 17 + TSS region transcription start site region 87476
Tssr91710 9 111062820 to 111062829 9 - TSS region transcription start site region 91710
Rp31-ps19 9 111071181 to 111071533 352 - pseudogene ribosomal protein L31, pseudogene 19
Cpgi22399 9 111071423 to 111071700 277 CpG island CpG island 22399
Gm26409 9 111075394 to 111075456 62 + snRNA gene predicted gene, 26409
Tssr3040 9 111090615 to 111090627 12 + TSS region transcription start site region 3040
Tssr91711 9 111095817 to 111095828 11 - TSS region transcription start site region 91711
Lrrfip2 9 111117592 to 111225668 108076 + protein coding gene leucine rich repeat (in FLII) interacting protein 2
Cpgi22400 9 111117765 to 111118813 1048 CpG island CpG island 22400
Tssr87477 9 111118070 to 111118183 113 + TSS region transcription start site region 87477
Tssr87478 9 111118206 to 111118217 11 + TSS region transcription start site region 87478
Tssr87479 9 111118242 to 111118264 22 + TSS region transcription start site region 87479
Tssr87480 9 111118291 to 111118312 21 + TSS region transcription start site region 87480
Tssr91712 9 111119256 to 111119271 15 - TSS region transcription start site region 91712
Tssr91713 9 111119286 to 111119301 15 - TSS region transcription start site region 91713
Tssr87481 9 111119423 to 111119447 24 + TSS region transcription start site region 87481
D9Dcr118 9 111122971 to 111123067 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 118
Tssr87482 9 111125341 to 111125344 3 + TSS region transcription start site region 87482
Tssr87483 9 111146695 to 111146724 29 + TSS region transcription start site region 87483
Tssr87484 9 111148033 to 111148039 6 + TSS region transcription start site region 87484
Tssr87485 9 111152095 to 111152096 1 + TSS region transcription start site region 87485
Tssr87486 9 111168741 to 111168751 10 + TSS region transcription start site region 87486
Tssr87487 9 111174210 to 111174219 9 + TSS region transcription start site region 87487
Tssr87488 9 111182300 to 111182306 6 + TSS region transcription start site region 87488
Tssr87489 9 111182320 to 111182336 16 + TSS region transcription start site region 87489
Tssr87490 9 111185185 to 111185197 12 + TSS region transcription start site region 87490
Tssr87491 9 111205742 to 111205749 7 + TSS region transcription start site region 87491
Tssr87492 9 111205763 to 111205780 17 + TSS region transcription start site region 87492
Tssr87493 9 111211412 to 111211416 4 + TSS region transcription start site region 87493
Tssr3041 9 111216718 to 111216722 4 + TSS region transcription start site region 3041
Tssr87494 9 111224579 to 111224585 6 + TSS region transcription start site region 87494
Mlh1 9 111228228 to 111271786 43558 - protein coding gene mutL homolog 1
Gm24860 9 111244592 to 111244867 275 - unclassified non-coding RNA gene predicted gene, 24860
Cpgi22401 9 111271016 to 111272743 1727 CpG island CpG island 22401
Tssr91714 9 111271522 to 111271562 40 - TSS region transcription start site region 91714
Tssr91715 9 111271568 to 111271591 23 - TSS region transcription start site region 91715
Tssr87495 9 111271812 to 111271823 11 + TSS region transcription start site region 87495
Tssr87496 9 111271832 to 111271914 82 + TSS region transcription start site region 87496
Tssr87497 9 111271920 to 111271943 23 + TSS region transcription start site region 87497
Epm2aip1 9 111271929 to 111279093 7164 + protein coding gene EPM2A (laforin) interacting protein 1
Tssr87498 9 111271950 to 111271963 13 + TSS region transcription start site region 87498
Tssr87499 9 111275749 to 111275770 21 + TSS region transcription start site region 87499
Tssr87500 9 111289898 to 111289907 9 + TSS region transcription start site region 87500
Cpgi22402 9 111289930 to 111290319 389 CpG island CpG island 22402
Gm40580 9 111292394 to 111293173 779 - lncRNA gene predicted gene, 40580
Cpgi22403 9 111311096 to 111313067 1971 CpG island CpG island 22403
Tssr87501 9 111311539 to 111311551 12 + TSS region transcription start site region 87501
Tssr87502 9 111311567 to 111311586 19 + TSS region transcription start site region 87502
Tssr87503 9 111311674 to 111311758 84 + TSS region transcription start site region 87503
Trank1 9 111311739 to 111395775 84036 + protein coding gene tetratricopeptide repeat and ankyrin repeat containing 1
Tssr87504 9 111311770 to 111311796 26 + TSS region transcription start site region 87504
Tssr87505 9 111311804 to 111311840 36 + TSS region transcription start site region 87505
Tssr87506 9 111312108 to 111312121 13 + TSS region transcription start site region 87506
Tssr87507 9 111351851 to 111351870 19 + TSS region transcription start site region 87507
Tssr87508 9 111351872 to 111351897 25 + TSS region transcription start site region 87508
Tssr87509 9 111351909 to 111351922 13 + TSS region transcription start site region 87509
Tssr87510 9 111351961 to 111351970 9 + TSS region transcription start site region 87510
D9Mit350 9 111360411 to 111360536 125 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 350
D9Dcr119 9 111360416 to 111360516 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 119
D9Dcr120 9 111407230 to 111407325 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 120
D9Mit185 9 111410536 to 111410667 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 185
Gm42527 9 111411434 to 111412913 1479 + unclassified gene predicted gene 42527
D9Dcr121 9 111415077 to 111415182 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 121
Cpgi22404 9 111438479 to 111438663 184 CpG island CpG island 22404
Cpgi22405 9 111438788 to 111439605 817 CpG island CpG island 22405
Tssr87511 9 111439063 to 111439097 34 + TSS region transcription start site region 87511
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Tssr87512 9 111439098 to 111439133 35 + TSS region transcription start site region 87512
Tssr91716 9 111461629 to 111461633 4 - TSS region transcription start site region 91716
Cpgi22406 9 111467575 to 111467872 297 CpG island CpG island 22406
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719
D9Dcr122 9 111779474 to 111779569 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 122
Tssr87514 9 111885290 to 111885293 3 + TSS region transcription start site region 87514
4930545L08Rik 9 111912311 to 111918666 6355 - lincRNA gene RIKEN cDNA 4930545L08 gene
Gm39430 9 111975467 to 111978001 2534 - lncRNA gene predicted gene, 39430
Tssr91720 9 111977877 to 111977904 27 - TSS region transcription start site region 91720
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91721 9 112073868 to 112073879 11 - TSS region transcription start site region 91721
Tssr91722 9 112077912 to 112077952 40 - TSS region transcription start site region 91722
Tssr91723 9 112087747 to 112087765 18 - TSS region transcription start site region 91723
Tssr91724 9 112092634 to 112092649 15 - TSS region transcription start site region 91724
Tssr91725 9 112095126 to 112095139 13 - TSS region transcription start site region 91725
Tssr91726 9 112097666 to 112097715 49 - TSS region transcription start site region 91726
Tssr91727 9 112097745 to 112097755 10 - TSS region transcription start site region 91727
Tssr91728 9 112097821 to 112097836 15 - TSS region transcription start site region 91728
Tssr91729 9 112097969 to 112097978 9 - TSS region transcription start site region 91729
Tssr91730 9 112098003 to 112098012 9 - TSS region transcription start site region 91730
Tssr91731 9 112098071 to 112098085 14 - TSS region transcription start site region 91731
Tssr91732 9 112099201 to 112099225 24 - TSS region transcription start site region 91732
Tssr91733 9 112099235 to 112099249 14 - TSS region transcription start site region 91733
Tssr91734 9 112099278 to 112099289 11 - TSS region transcription start site region 91734
Tssr91735 9 112099326 to 112099338 12 - TSS region transcription start site region 91735
Tssr91736 9 112099457 to 112099468 11 - TSS region transcription start site region 91736
Tssr91737 9 112099991 to 112100006 15 - TSS region transcription start site region 91737
Tssr91738 9 112101686 to 112101689 3 - TSS region transcription start site region 91738