Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:110527765-111708813

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318 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
cir 9 108641085 to 111021636 2380551 heritable phenotypic marker circling
Tssr87389 9 110529187 to 110529204 17 + TSS region transcription start site region 87389
Tssr3032 9 110529226 to 110529229 3 + TSS region transcription start site region 3032
Tssr87390 9 110529231 to 110529242 11 + TSS region transcription start site region 87390
Cpgi22381 9 110531834 to 110533450 1616 CpG island CpG island 22381
Tssr91630 9 110532350 to 110532362 12 - TSS region transcription start site region 91630
Tssr87391 9 110532438 to 110532467 29 + TSS region transcription start site region 87391
Tssr87392 9 110532501 to 110532600 99 + TSS region transcription start site region 87392
Setd2 9 110532597 to 110618633 86036 + protein coding gene SET domain containing 2
Tssr87393 9 110532607 to 110532640 33 + TSS region transcription start site region 87393
Tssr87394 9 110532642 to 110532692 50 + TSS region transcription start site region 87394
Tssr3033 9 110532693 to 110532728 35 + TSS region transcription start site region 3033
Tssr91631 9 110532775 to 110532778 3 - TSS region transcription start site region 91631
Tssr91632 9 110532780 to 110532801 21 - TSS region transcription start site region 91632
Tssr91633 9 110532808 to 110532826 18 - TSS region transcription start site region 91633
Tssr91634 9 110532832 to 110532846 14 - TSS region transcription start site region 91634
Tssr91635 9 110532918 to 110532939 21 - TSS region transcription start site region 91635
Tssr91636 9 110532944 to 110532958 14 - TSS region transcription start site region 91636
Gm42763 9 110543211 to 110545297 2086 + unclassified gene predicted gene 42763
Tssr87395 9 110547126 to 110547137 11 + TSS region transcription start site region 87395
Tssr87396 9 110547671 to 110547708 37 + TSS region transcription start site region 87396
Nradd 9 110621135 to 110624393 3258 - protein coding gene neurotrophin receptor associated death domain
Tssr91637 9 110624350 to 110624358 8 - TSS region transcription start site region 91637
Tssr91638 9 110624361 to 110624439 78 - TSS region transcription start site region 91638
Cpgi22382 9 110624426 to 110625452 1026 CpG island CpG island 22382
Tssr87397 9 110624514 to 110624533 19 + TSS region transcription start site region 87397
Nbeal2 9 110624789 to 110654161 29372 - protein coding gene neurobeachin-like 2
Cpgi22383 9 110631381 to 110632327 946 CpG island CpG island 22383
Cpgi22384 9 110635230 to 110635566 336 CpG island CpG island 22384
Mir8107 9 110635999 to 110636115 116 - miRNA gene microRNA 8107
Tssr91639 9 110645295 to 110645302 7 - TSS region transcription start site region 91639
Tssr91640 9 110645306 to 110645320 14 - TSS region transcription start site region 91640
Tssr91641 9 110645328 to 110645354 26 - TSS region transcription start site region 91641
Cpgi22385 9 110653285 to 110654440 1155 CpG island CpG island 22385
Tssr91642 9 110653957 to 110654005 48 - TSS region transcription start site region 91642
Tssr91643 9 110654066 to 110654081 15 - TSS region transcription start site region 91643
Tssr91644 9 110654169 to 110654212 43 - TSS region transcription start site region 91644
Tssr91645 9 110654229 to 110654254 25 - TSS region transcription start site region 91645
Gm42470 9 110655679 to 110656455 776 + lincRNA gene predicted gene 42470
Cpgi22386 9 110656327 to 110656947 620 CpG island CpG island 22386
Tssr91646 9 110656382 to 110656419 37 - TSS region transcription start site region 91646
Tssr87398 9 110656466 to 110656477 11 + TSS region transcription start site region 87398
Tssr87399 9 110656494 to 110656544 50 + TSS region transcription start site region 87399
Ccdc12 9 110656503 to 110711593 55090 + protein coding gene coiled-coil domain containing 12
Tssr87400 9 110661689 to 110661694 5 + TSS region transcription start site region 87400
Tssr87401 9 110663690 to 110663694 4 + TSS region transcription start site region 87401
Tssr87402 9 110665433 to 110665442 9 + TSS region transcription start site region 87402
Gm35715 9 110669329 to 110674954 5625 - antisense lncRNA gene predicted gene, 35715
Tssr3034 9 110680218 to 110680219 1 - TSS region transcription start site region 3034
Tssr91647 9 110684128 to 110684140 12 - TSS region transcription start site region 91647
Tssr87403 9 110689442 to 110689463 21 + TSS region transcription start site region 87403
Tssr87404 9 110709984 to 110710028 44 + TSS region transcription start site region 87404
Pth1r 9 110722085 to 110747145 25060 - protein coding gene parathyroid hormone 1 receptor
Cpgi22387 9 110726741 to 110727457 716 CpG island CpG island 22387
Tssr91648 9 110728339 to 110728343 4 - TSS region transcription start site region 91648
Cpgi22388 9 110732634 to 110733282 648 CpG island CpG island 22388
Gm35775 9 110738525 to 110741802 3277 - lncRNA gene predicted gene, 35775
Cpgi22389 9 110741918 to 110744233 2315 CpG island CpG island 22389
Tssr91649 9 110742565 to 110742576 11 - TSS region transcription start site region 91649
Tssr91650 9 110742577 to 110742591 14 - TSS region transcription start site region 91650
Tssr91651 9 110743639 to 110743646 7 - TSS region transcription start site region 91651
Tssr91652 9 110743653 to 110743673 20 - TSS region transcription start site region 91652
Tssr91653 9 110747075 to 110747121 46 - TSS region transcription start site region 91653
Tssr91654 9 110747125 to 110747132 7 - TSS region transcription start site region 91654
Tssr91655 9 110747179 to 110747191 12 - TSS region transcription start site region 91655
Tssr91656 9 110750101 to 110750120 19 - TSS region transcription start site region 91656
D9Mit37b 9 110762590 to 110762727 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 37b
D9Mit37a 9 110762590 to 110762646 56 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 37a
Bwq6 9 110762590 to 110762646 56 QTL body weight, QTL 6
Bdln5 9 110762590 to 110762646 56 QTL body length 5
Tssr87405 9 110763670 to 110763702 32 + TSS region transcription start site region 87405
Myl3 9 110763681 to 110769794 6113 + protein coding gene myosin, light polypeptide 3
Tssr3035 9 110763728 to 110763735 7 + TSS region transcription start site region 3035
Tssr87406 9 110766228 to 110766242 14 + TSS region transcription start site region 87406
Tssr87407 9 110766621 to 110766638 17 + TSS region transcription start site region 87407
Tssr87408 9 110766691 to 110766702 11 + TSS region transcription start site region 87408
Tssr87409 9 110769719 to 110769732 13 + TSS region transcription start site region 87409
Tssr87410 9 110769741 to 110769757 16 + TSS region transcription start site region 87410
Tssr87411 9 110769761 to 110769771 10 + TSS region transcription start site region 87411
9430025E04Rik 9 110780428 to 110781871 1443 unclassified gene RIKEN cDNA 9430025E04 gene
Cpgi22390 9 110780953 to 110782030 1077 CpG island CpG island 22390
Gm46141 9 110789793 to 110793587 3794 - pseudogene predicted gene, 46141
Tssr87412 9 110797243 to 110797264 21 + TSS region transcription start site region 87412
Cpgi22391 9 110798066 to 110798368 302 CpG island CpG island 22391
Tssr87413 9 110798160 to 110798177 17 + TSS region transcription start site region 87413
Prss42 9 110798166 to 110803754 5588 + protein coding gene protease, serine 42
D9Dcr117 9 110803538 to 110803642 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 117
Prss44 9 110813900 to 110817999 4099 + protein coding gene protease, serine 44
Cpgi22392 9 110813918 to 110814128 210 CpG island CpG island 22392
Tssr87414 9 110813986 to 110814030 44 + TSS region transcription start site region 87414
Prss43 9 110826690 to 110831507 4817 + protein coding gene protease, serine 43
Tssr87415 9 110827006 to 110827022 16 + TSS region transcription start site region 87415
Cpgi22393 9 110834402 to 110835069 667 CpG island CpG island 22393
Prss45 9 110834588 to 110841310 6722 + protein coding gene protease, serine 45
Tssr87416 9 110834621 to 110834637 16 + TSS region transcription start site region 87416
Tssr87417 9 110834653 to 110834663 10 + TSS region transcription start site region 87417
Tssr87418 9 110834674 to 110834681 7 + TSS region transcription start site region 87418
Tssr87419 9 110844497 to 110844513 16 + TSS region transcription start site region 87419
Prss46 9 110844506 to 110856522 12016 + protein coding gene protease, serine 46
Tssr87420 9 110844522 to 110844531 9 + TSS region transcription start site region 87420
Tssr87421 9 110849467 to 110849470 3 + TSS region transcription start site region 87421
Tssr87422 9 110849494 to 110849504 10 + TSS region transcription start site region 87422
Tssr87423 9 110849507 to 110849529 22 + TSS region transcription start site region 87423
Tssr87424 9 110849539 to 110849554 15 + TSS region transcription start site region 87424
Cpgi22394 9 110857617 to 110858431 814 CpG island CpG island 22394
Tssr87425 9 110857928 to 110857938 10 + TSS region transcription start site region 87425
Tssr87426 9 110857958 to 110857987 29 + TSS region transcription start site region 87426
Prss50 9 110857967 to 110864629 6662 + protein coding gene protease, serine 50
Tmie 9 110865707 to 110880083 14376 - protein coding gene transmembrane inner ear
Cpgi22395 9 110873573 to 110874172 599 CpG island CpG island 22395
Tssr91657 9 110873990 to 110874009 19 - TSS region transcription start site region 91657
Tssr91658 9 110874018 to 110874029 11 - TSS region transcription start site region 91658
Tssr91659 9 110874099 to 110874124 25 - TSS region transcription start site region 91659
Tssr91660 9 110878898 to 110878902 4 - TSS region transcription start site region 91660
Tssr91661 9 110879446 to 110879476 30 - TSS region transcription start site region 91661
Tssr91662 9 110879511 to 110879524 13 - TSS region transcription start site region 91662
Cpgi22396 9 110879621 to 110880917 1296 CpG island CpG island 22396
Tssr91663 9 110880052 to 110880087 35 - TSS region transcription start site region 91663
Tssr3036 9 110880107 to 110880119 12 - TSS region transcription start site region 3036
Als2cl 9 110880135 to 110900530 20395 + protein coding gene ALS2 C-terminal like
Tssr87427 9 110880157 to 110880187 30 + TSS region transcription start site region 87427
Tssr87428 9 110880192 to 110880207 15 + TSS region transcription start site region 87428
Tssr87429 9 110880249 to 110880264 15 + TSS region transcription start site region 87429
Tssr87430 9 110880286 to 110880315 29 + TSS region transcription start site region 87430
Tssr87431 9 110880321 to 110880346 25 + TSS region transcription start site region 87431
Tssr87432 9 110880350 to 110880364 14 + TSS region transcription start site region 87432
Tssr87433 9 110880401 to 110880410 9 + TSS region transcription start site region 87433
Tssr91664 9 110887955 to 110887989 34 - TSS region transcription start site region 91664
Gm43127 9 110893111 to 110895899 2788 - unclassified gene predicted gene 43127
Tssr87434 9 110895741 to 110895750 9 + TSS region transcription start site region 87434
Tssr87435 9 110895770 to 110895781 11 + TSS region transcription start site region 87435
Tssr87436 9 110896948 to 110896979 31 + TSS region transcription start site region 87436
Tssr87437 9 110907736 to 110907740 4 + TSS region transcription start site region 87437
Tssr91665 9 110909664 to 110909692 28 - TSS region transcription start site region 91665
Fam240a 9 110914739 to 110916861 2122 - protein coding gene family with sequence similarity 240 member A
Tssr91666 9 110916891 to 110916900 9 - TSS region transcription start site region 91666
Tssr91667 9 110920834 to 110920844 10 - TSS region transcription start site region 91667
Gm24269 9 110925403 to 110925479 76 + miRNA gene predicted gene, 24269
Tdgf1 9 110939608 to 110946158 6550 - protein coding gene teratocarcinoma-derived growth factor 1
Tssr91668 9 110946088 to 110946112 24 - TSS region transcription start site region 91668
Cpgi22397 9 110946522 to 110946740 218 CpG island CpG island 22397
Tssr91669 9 110947258 to 110947275 17 - TSS region transcription start site region 91669
Tssr87438 9 110948321 to 110948341 20 + TSS region transcription start site region 87438
Lrrc2 9 110951545 to 110984066 32521 + protein coding gene leucine rich repeat containing 2
Tssr87439 9 110951727 to 110951745 18 + TSS region transcription start site region 87439
Tssr87440 9 110953153 to 110953176 23 + TSS region transcription start site region 87440
Tssr87441 9 110953437 to 110953439 2 + TSS region transcription start site region 87441
Tssr87442 9 110953693 to 110953702 9 + TSS region transcription start site region 87442
Cpgi22398 9 110953694 to 110954489 795 CpG island CpG island 22398
Tssr87443 9 110953726 to 110953756 30 + TSS region transcription start site region 87443
Tssr87444 9 110953758 to 110953787 29 + TSS region transcription start site region 87444
Tssr87445 9 110953789 to 110953807 18 + TSS region transcription start site region 87445
Tssr87446 9 110953808 to 110953863 55 + TSS region transcription start site region 87446
Tssr87447 9 110960452 to 110960477 25 + TSS region transcription start site region 87447
Tssr87448 9 110960826 to 110960838 12 + TSS region transcription start site region 87448
Tssr87449 9 110960843 to 110960874 31 + TSS region transcription start site region 87449
Tssr87450 9 110960889 to 110960896 7 + TSS region transcription start site region 87450
Tssr87451 9 110960927 to 110960941 14 + TSS region transcription start site region 87451
Tssr87452 9 110965256 to 110965278 22 + TSS region transcription start site region 87452
Gm43535 9 110974432 to 110974595 163 + unclassified gene predicted gene 43535
Rtp3 9 110984938 to 110990583 5645 - protein coding gene receptor transporter protein 3
1700061E17Rik 9 110986201 to 110987804 1603 + antisense lncRNA gene RIKEN cDNA 1700061E17 gene
Gm10030 9 110989499 to 111008029 18530 + unclassified non-coding RNA gene predicted gene 10030
Tssr91670 9 110989712 to 110989728 16 - TSS region transcription start site region 91670
Tssr91671 9 110989735 to 110989748 13 - TSS region transcription start site region 91671
Tssr91672 9 110990330 to 110990344 14 - TSS region transcription start site region 91672
Tssr91673 9 110990451 to 110990466 15 - TSS region transcription start site region 91673
Tssr91674 9 110990570 to 110990599 29 - TSS region transcription start site region 91674
Tssr87453 9 110992772 to 110992794 22 + TSS region transcription start site region 87453
Tssr87454 9 110992815 to 110992820 5 + TSS region transcription start site region 87454
Tssr91675 9 111001891 to 111001897 6 - TSS region transcription start site region 91675
Tssr87455 9 111009121 to 111009129 8 + TSS region transcription start site region 87455
Tssr91676 9 111017160 to 111017167 7 - TSS region transcription start site region 91676
Tssr87456 9 111019284 to 111019298 14 + TSS region transcription start site region 87456
Ltf 9 111019292 to 111042766 23474 + protein coding gene lactotransferrin
Tssr87457 9 111020943 to 111020960 17 + TSS region transcription start site region 87457
D9Mit38 9 111021446 to 111021636 190 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 38
Tssr87458 9 111021972 to 111021991 19 + TSS region transcription start site region 87458
Tssr87459 9 111022390 to 111022401 11 + TSS region transcription start site region 87459
Tssr3037 9 111023549 to 111023592 43 + TSS region transcription start site region 3037
Tssr87460 9 111024382 to 111024392 10 + TSS region transcription start site region 87460
Tssr3038 9 111024467 to 111024486 19 + TSS region transcription start site region 3038
Tssr87461 9 111025035 to 111025048 13 + TSS region transcription start site region 87461
Tssr87462 9 111025120 to 111025131 11 + TSS region transcription start site region 87462
Tssr3039 9 111026060 to 111026082 22 - TSS region transcription start site region 3039
Tssr87463 9 111027330 to 111027339 9 + TSS region transcription start site region 87463
Tssr87464 9 111027358 to 111027372 14 + TSS region transcription start site region 87464
Tssr87465 9 111029594 to 111029604 10 + TSS region transcription start site region 87465
Tssr91677 9 111031095 to 111031104 9 - TSS region transcription start site region 91677
Tssr87466 9 111032982 to 111032991 9 + TSS region transcription start site region 87466
Tssr87467 9 111035737 to 111035750 13 + TSS region transcription start site region 87467
Tssr87468 9 111038729 to 111038736 7 + TSS region transcription start site region 87468
Tssr87469 9 111038742 to 111038750 8 + TSS region transcription start site region 87469
Tssr87470 9 111038889 to 111038901 12 + TSS region transcription start site region 87470
Tssr91678 9 111042310 to 111042323 13 - TSS region transcription start site region 91678
Gm43814 9 111052781 to 111053193 412 - unclassified gene predicted gene 43814
Tssr91679 9 111053619 to 111053639 20 - TSS region transcription start site region 91679
Tssr91680 9 111053653 to 111053674 21 - TSS region transcription start site region 91680
Tssr91681 9 111053833 to 111053848 15 - TSS region transcription start site region 91681
Tssr91682 9 111053877 to 111053889 12 - TSS region transcription start site region 91682