Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:110152638-110692645

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarcc1 9 110132024 to 110240178 108154 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Tssr87331 9 110197720 to 110197725 5 + TSS region transcription start site region 87331
Tssr91598 9 110210113 to 110210118 5 - TSS region transcription start site region 91598
Rn4.5s-ps2 9 110241766 to 110241856 90 + pseudogene 4.5s RNA, pseudogene 2
Cspg5 9 110243783 to 110262576 18793 + protein coding gene chondroitin sulfate proteoglycan 5
Cpgi22373 9 110244595 to 110246578 1983 CpG island CpG island 22373
Tssr87332 9 110244920 to 110244944 24 + TSS region transcription start site region 87332
Tssr87333 9 110244949 to 110244964 15 + TSS region transcription start site region 87333
Tssr87334 9 110245109 to 110245190 81 + TSS region transcription start site region 87334
Tssr87335 9 110245382 to 110245417 35 + TSS region transcription start site region 87335
Tssr87336 9 110245421 to 110245491 70 + TSS region transcription start site region 87336
Tssr87337 9 110245506 to 110245518 12 + TSS region transcription start site region 87337
Tssr87338 9 110246215 to 110246236 21 + TSS region transcription start site region 87338
Tssr87339 9 110247260 to 110247272 12 + TSS region transcription start site region 87339
Gm43622 9 110252126 to 110254144 2018 - unclassified gene predicted gene 43622
Gm39429 9 110266638 to 110282667 16029 - lncRNA gene predicted gene, 39429
Tssr87340 9 110281259 to 110281266 7 + TSS region transcription start site region 87340
Tssr87341 9 110281280 to 110281338 58 + TSS region transcription start site region 87341
Mir6236 9 110281287 to 110281409 122 + miRNA gene microRNA 6236
Tssr87342 9 110281342 to 110281352 10 + TSS region transcription start site region 87342
Tssr91599 9 110282653 to 110282678 25 - TSS region transcription start site region 91599
Gm42775 9 110288952 to 110293937 4985 - lincRNA gene predicted gene 42775
Cpgi22374 9 110304896 to 110305624 728 CpG island CpG island 22374
Tssr91600 9 110305057 to 110305120 63 - TSS region transcription start site region 91600
Tssr87343 9 110305185 to 110305229 44 + TSS region transcription start site region 87343
Elp6 9 110305192 to 110322102 16910 + protein coding gene elongator acetyltransferase complex subunit 6
Gm35575 9 110307523 to 110308152 629 - pseudogene predicted gene, 35575
Tssr91601 9 110307716 to 110307725 9 - TSS region transcription start site region 91601
Gm42638 9 110327978 to 110330564 2586 - unclassified gene predicted gene 42638
Tssr87344 9 110329157 to 110329189 32 + TSS region transcription start site region 87344
Cpgi22375 9 110329634 to 110329971 337 CpG island CpG island 22375
Tssr91602 9 110330542 to 110330561 19 - TSS region transcription start site region 91602
Cpgi22376 9 110333116 to 110334115 999 CpG island CpG island 22376
Tssr87345 9 110333276 to 110333322 46 + TSS region transcription start site region 87345
Scap 9 110333288 to 110384949 51661 + protein coding gene SREBF chaperone
Tssr87346 9 110333340 to 110333389 49 + TSS region transcription start site region 87346
Tssr87347 9 110333402 to 110333435 33 + TSS region transcription start site region 87347
Tssr87348 9 110344071 to 110344077 6 + TSS region transcription start site region 87348
Tssr87349 9 110344163 to 110344180 17 + TSS region transcription start site region 87349
Tssr87350 9 110344185 to 110344204 19 + TSS region transcription start site region 87350
Tssr87351 9 110344209 to 110344229 20 + TSS region transcription start site region 87351
Tssr87352 9 110344251 to 110344262 11 + TSS region transcription start site region 87352
Tssr87353 9 110362433 to 110362470 37 + TSS region transcription start site region 87353
5830462I19Rik 9 110372048 to 110375430 3382 - unclassified gene RIKEN cDNA 5830462I19 gene
Cpgi22377 9 110380191 to 110381488 1297 CpG island CpG island 22377
Tssr87354 9 110380941 to 110380949 8 + TSS region transcription start site region 87354
Ptpn23 9 110385084 to 110408210 23126 - protein coding gene protein tyrosine phosphatase, non-receptor type 23
Tssr91603 9 110387585 to 110387596 11 - TSS region transcription start site region 91603
Tssr91604 9 110387641 to 110387661 20 - TSS region transcription start site region 91604
Tssr91605 9 110387708 to 110387729 21 - TSS region transcription start site region 91605
Tssr91606 9 110388084 to 110388102 18 - TSS region transcription start site region 91606
Tssr91607 9 110388203 to 110388222 19 - TSS region transcription start site region 91607
Tssr91608 9 110388227 to 110388243 16 - TSS region transcription start site region 91608
Tssr91609 9 110388351 to 110388363 12 - TSS region transcription start site region 91609
D9Mit292 9 110406012 to 110406136 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 292
Cpgi22378 9 110407591 to 110408695 1104 CpG island CpG island 22378
Tssr91610 9 110408131 to 110408155 24 - TSS region transcription start site region 91610
Tssr91611 9 110408160 to 110408204 44 - TSS region transcription start site region 91611
Tssr91612 9 110408208 to 110408217 9 - TSS region transcription start site region 91612
Tssr91613 9 110408223 to 110408234 11 - TSS region transcription start site region 91613
Tssr87355 9 110415495 to 110415499 4 + TSS region transcription start site region 87355
Tssr87356 9 110415509 to 110415532 23 + TSS region transcription start site region 87356
Tssr87357 9 110415547 to 110415558 11 + TSS region transcription start site region 87357
Tssr3019 9 110415604 to 110415609 5 + TSS region transcription start site region 3019
Tssr87358 9 110415834 to 110415871 37 + TSS region transcription start site region 87358
Tssr87359 9 110417749 to 110417753 4 + TSS region transcription start site region 87359
Tssr87360 9 110419806 to 110419809 3 + TSS region transcription start site region 87360
Ngp 9 110419808 to 110423012 3204 + protein coding gene neutrophilic granule protein
Tssr87361 9 110419841 to 110419862 21 + TSS region transcription start site region 87361
Tssr91614 9 110419954 to 110419963 9 - TSS region transcription start site region 91614
Tssr91615 9 110419968 to 110419997 29 - TSS region transcription start site region 91615
Tssr87362 9 110420111 to 110420117 6 + TSS region transcription start site region 87362
Tssr87363 9 110420805 to 110420833 28 + TSS region transcription start site region 87363
Tssr87364 9 110420834 to 110420884 50 + TSS region transcription start site region 87364
Tssr91616 9 110420861 to 110420874 13 - TSS region transcription start site region 91616
Tssr91617 9 110420876 to 110420899 23 - TSS region transcription start site region 91617
Tssr3020 9 110420885 to 110420889 4 + TSS region transcription start site region 3020
Tssr91618 9 110420908 to 110420919 11 - TSS region transcription start site region 91618
Tssr87365 9 110420911 to 110420918 7 + TSS region transcription start site region 87365
Tssr3021 9 110421289 to 110421296 7 - TSS region transcription start site region 3021
Tssr87366 9 110421693 to 110421707 14 + TSS region transcription start site region 87366
Tssr87367 9 110421710 to 110421745 35 + TSS region transcription start site region 87367
Tssr3022 9 110421732 to 110421743 11 - TSS region transcription start site region 3022
Tssr87368 9 110422266 to 110422278 12 + TSS region transcription start site region 87368
Tssr87369 9 110422291 to 110422296 5 + TSS region transcription start site region 87369
Tssr91619 9 110422305 to 110422330 25 - TSS region transcription start site region 91619
Tssr87370 9 110422324 to 110422346 22 + TSS region transcription start site region 87370
Tssr87371 9 110422363 to 110422374 11 + TSS region transcription start site region 87371
Tssr3023 9 110422368 to 110422382 14 - TSS region transcription start site region 3023
Tssr3024 9 110422391 to 110422400 9 - TSS region transcription start site region 3024
Tssr91620 9 110422409 to 110422434 25 - TSS region transcription start site region 91620
Tssr87372 9 110422419 to 110422444 25 + TSS region transcription start site region 87372
Tssr87373 9 110422449 to 110422484 35 + TSS region transcription start site region 87373
Tssr3025 9 110422470 to 110422489 19 - TSS region transcription start site region 3025
Tssr87374 9 110422490 to 110422506 16 + TSS region transcription start site region 87374
Tssr91621 9 110422504 to 110422513 9 - TSS region transcription start site region 91621
Tssr87375 9 110422508 to 110422529 21 + TSS region transcription start site region 87375
Tssr3026 9 110422526 to 110422538 12 - TSS region transcription start site region 3026
Tssr87376 9 110422530 to 110422535 5 + TSS region transcription start site region 87376
Tssr87377 9 110422538 to 110422549 11 + TSS region transcription start site region 87377
Tssr91622 9 110422546 to 110422575 29 - TSS region transcription start site region 91622
Tssr87378 9 110422588 to 110422600 12 + TSS region transcription start site region 87378
Tssr3027 9 110422609 to 110422635 26 - TSS region transcription start site region 3027
Tssr87379 9 110422638 to 110422645 7 + TSS region transcription start site region 87379
Tssr3028 9 110422687 to 110422701 14 - TSS region transcription start site region 3028
Tssr3029 9 110422702 to 110422717 15 - TSS region transcription start site region 3029
Tssr3030 9 110422723 to 110422728 5 - TSS region transcription start site region 3030
Tssr87380 9 110422851 to 110422862 11 + TSS region transcription start site region 87380
Tssr3031 9 110422896 to 110422920 24 - TSS region transcription start site region 3031
Tssr91623 9 110423008 to 110423010 2 - TSS region transcription start site region 91623
Klhl18 9 110425926 to 110476694 50768 - protein coding gene kelch-like 18
Tssr91624 9 110459235 to 110459246 11 - TSS region transcription start site region 91624
Tssr91625 9 110461055 to 110461087 32 - TSS region transcription start site region 91625
Tssr91626 9 110462422 to 110462431 9 - TSS region transcription start site region 91626
Tssr91627 9 110462436 to 110462453 17 - TSS region transcription start site region 91627
Cpgi22379 9 110476298 to 110477175 877 CpG island CpG island 22379
Tssr91628 9 110476604 to 110476627 23 - TSS region transcription start site region 91628
Tssr91629 9 110476637 to 110476648 11 - TSS region transcription start site region 91629
Tssr87381 9 110476952 to 110476980 28 + TSS region transcription start site region 87381
Kif9 9 110476958 to 110525179 48221 + protein coding gene kinesin family member 9
Tssr87382 9 110476985 to 110476999 14 + TSS region transcription start site region 87382
Tssr87383 9 110477016 to 110477025 9 + TSS region transcription start site region 87383
Tssr87384 9 110477034 to 110477045 11 + TSS region transcription start site region 87384
Tssr87385 9 110477067 to 110477073 6 + TSS region transcription start site region 87385
Tssr87386 9 110477080 to 110477097 17 + TSS region transcription start site region 87386
Cpgi22380 9 110478210 to 110478404 194 CpG island CpG island 22380
Tssr87387 9 110509950 to 110509970 20 + TSS region transcription start site region 87387
Tssr87388 9 110510241 to 110510251 10 + TSS region transcription start site region 87388
Tssr87389 9 110529187 to 110529204 17 + TSS region transcription start site region 87389
Tssr3032 9 110529226 to 110529229 3 + TSS region transcription start site region 3032
Tssr87390 9 110529231 to 110529242 11 + TSS region transcription start site region 87390
Cpgi22381 9 110531834 to 110533450 1616 CpG island CpG island 22381
Tssr91630 9 110532350 to 110532362 12 - TSS region transcription start site region 91630
Tssr87391 9 110532438 to 110532467 29 + TSS region transcription start site region 87391
Tssr87392 9 110532501 to 110532600 99 + TSS region transcription start site region 87392
Setd2 9 110532597 to 110618633 86036 + protein coding gene SET domain containing 2
Tssr87393 9 110532607 to 110532640 33 + TSS region transcription start site region 87393
Tssr87394 9 110532642 to 110532692 50 + TSS region transcription start site region 87394
Tssr3033 9 110532693 to 110532728 35 + TSS region transcription start site region 3033
Tssr91631 9 110532775 to 110532778 3 - TSS region transcription start site region 91631
Tssr91632 9 110532780 to 110532801 21 - TSS region transcription start site region 91632
Tssr91633 9 110532808 to 110532826 18 - TSS region transcription start site region 91633
Tssr91634 9 110532832 to 110532846 14 - TSS region transcription start site region 91634
Tssr91635 9 110532918 to 110532939 21 - TSS region transcription start site region 91635
Tssr91636 9 110532944 to 110532958 14 - TSS region transcription start site region 91636
Gm42763 9 110543211 to 110545297 2086 + unclassified gene predicted gene 42763
Tssr87395 9 110547126 to 110547137 11 + TSS region transcription start site region 87395
Tssr87396 9 110547671 to 110547708 37 + TSS region transcription start site region 87396
Nradd 9 110621135 to 110624393 3258 - protein coding gene neurotrophin receptor associated death domain
Tssr91637 9 110624350 to 110624358 8 - TSS region transcription start site region 91637
Tssr91638 9 110624361 to 110624439 78 - TSS region transcription start site region 91638
Cpgi22382 9 110624426 to 110625452 1026 CpG island CpG island 22382
Tssr87397 9 110624514 to 110624533 19 + TSS region transcription start site region 87397
Nbeal2 9 110624789 to 110654161 29372 - protein coding gene neurobeachin-like 2
Cpgi22383 9 110631381 to 110632327 946 CpG island CpG island 22383
Cpgi22384 9 110635230 to 110635566 336 CpG island CpG island 22384
Mir8107 9 110635999 to 110636115 116 - miRNA gene microRNA 8107
Tssr91639 9 110645295 to 110645302 7 - TSS region transcription start site region 91639
Tssr91640 9 110645306 to 110645320 14 - TSS region transcription start site region 91640
Tssr91641 9 110645328 to 110645354 26 - TSS region transcription start site region 91641
Cpgi22385 9 110653285 to 110654440 1155 CpG island CpG island 22385
Tssr91642 9 110653957 to 110654005 48 - TSS region transcription start site region 91642
Tssr91643 9 110654066 to 110654081 15 - TSS region transcription start site region 91643
Tssr91644 9 110654169 to 110654212 43 - TSS region transcription start site region 91644
Tssr91645 9 110654229 to 110654254 25 - TSS region transcription start site region 91645
Gm42470 9 110655679 to 110656455 776 + lincRNA gene predicted gene 42470
Cpgi22386 9 110656327 to 110656947 620 CpG island CpG island 22386
Tssr91646 9 110656382 to 110656419 37 - TSS region transcription start site region 91646
Tssr87398 9 110656466 to 110656477 11 + TSS region transcription start site region 87398
Tssr87399 9 110656494 to 110656544 50 + TSS region transcription start site region 87399
Ccdc12 9 110656503 to 110711593 55090 + protein coding gene coiled-coil domain containing 12
Tssr87400 9 110661689 to 110661694 5 + TSS region transcription start site region 87400
Tssr87401 9 110663690 to 110663694 4 + TSS region transcription start site region 87401
Tssr87402 9 110665433 to 110665442 9 + TSS region transcription start site region 87402
Gm35715 9 110669329 to 110674954 5625 - antisense lncRNA gene predicted gene, 35715
Tssr3034 9 110680218 to 110680219 1 - TSS region transcription start site region 3034
Tssr91647 9 110684128 to 110684140 12 - TSS region transcription start site region 91647
Tssr87403 9 110689442 to 110689463 21 + TSS region transcription start site region 87403