Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:109693615-110003624

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxw18 9 109676734 to 109702700 25966 - protein coding gene F-box and WD-40 domain protein 18
Gm43209 9 109702934 to 109704521 1587 + unclassified gene predicted gene 43209
Fbxw26 9 109717566 to 109746089 28523 - protein coding gene F-box and WD-40 domain protein 26
Fbxw27 9 109766045 to 109790670 24625 - protein coding gene F-box and WD-40 domain protein 27
Gm40579 9 109773289 to 109776217 2928 + lncRNA gene predicted gene, 40579
Tssr87237 9 109812207 to 109812218 11 + TSS region transcription start site region 87237
Tssr87238 9 109812219 to 109812230 11 + TSS region transcription start site region 87238
Tssr87239 9 109812249 to 109812269 20 + TSS region transcription start site region 87239
Spink8 9 109812280 to 109826633 14353 + protein coding gene serine peptidase inhibitor, Kazal type 8
Tssr87240 9 109812289 to 109812300 11 + TSS region transcription start site region 87240
Tssr87241 9 109816538 to 109816549 11 + TSS region transcription start site region 87241
Tssr87242 9 109816579 to 109816587 8 + TSS region transcription start site region 87242
Tssr87243 9 109816588 to 109816615 27 + TSS region transcription start site region 87243
Tssr87244 9 109816618 to 109816639 21 + TSS region transcription start site region 87244
Tssr87245 9 109816643 to 109816669 26 + TSS region transcription start site region 87245
Tssr87246 9 109816675 to 109816699 24 + TSS region transcription start site region 87246
3000002C10Rik 9 109830153 to 109831431 1278 - pseudogene RIKEN cDNA 3000002C10 gene
Cpgi22366 9 109832612 to 109833150 538 CpG island CpG island 22366
Tssr91586 9 109832667 to 109832680 13 - TSS region transcription start site region 91586
Nme6 9 109832710 to 109842974 10264 + protein coding gene NME/NM23 nucleoside diphosphate kinase 6
Tssr91587 9 109832713 to 109832739 26 - TSS region transcription start site region 91587
Tssr87247 9 109832756 to 109832802 46 + TSS region transcription start site region 87247
Tssr87248 9 109832998 to 109833058 60 + TSS region transcription start site region 87248
Tssr87249 9 109833059 to 109833073 14 + TSS region transcription start site region 87249
Tssr87250 9 109833135 to 109833157 22 + TSS region transcription start site region 87250
Tssr87251 9 109833163 to 109833201 38 + TSS region transcription start site region 87251
Tssr87252 9 109833217 to 109833226 9 + TSS region transcription start site region 87252
Camp 9 109847377 to 109849456 2079 - protein coding gene cathelicidin antimicrobial peptide
Tssr3015 9 109847385 to 109847389 4 + TSS region transcription start site region 3015
Tssr3016 9 109848423 to 109848439 16 + TSS region transcription start site region 3016
Tssr87253 9 109848594 to 109848610 16 + TSS region transcription start site region 87253
Tssr87254 9 109848615 to 109848624 9 + TSS region transcription start site region 87254
Tssr91588 9 109848700 to 109848710 10 - TSS region transcription start site region 91588
Tssr3017 9 109849248 to 109849259 11 + TSS region transcription start site region 3017
Tssr87255 9 109849302 to 109849311 9 + TSS region transcription start site region 87255
Tssr91589 9 109849440 to 109849454 14 - TSS region transcription start site region 91589
Tssr87256 9 109861600 to 109861610 10 + TSS region transcription start site region 87256
Gm39427 9 109861619 to 109863548 1929 + lncRNA gene predicted gene, 39427
Tssr87257 9 109861633 to 109861640 7 + TSS region transcription start site region 87257
Tssr87258 9 109861646 to 109861656 10 + TSS region transcription start site region 87258
Cpgi22367 9 109875280 to 109876402 1122 CpG island CpG island 22367
Tssr87259 9 109875541 to 109875591 50 + TSS region transcription start site region 87259
Cdc25a 9 109875579 to 109893895 18316 + protein coding gene cell division cycle 25A
Tssr87260 9 109875601 to 109875614 13 + TSS region transcription start site region 87260
Tssr87261 9 109875910 to 109876000 90 + TSS region transcription start site region 87261
Mir7089 9 109889643 to 109889710 67 + miRNA gene microRNA 7089
Tssr91590 9 109892457 to 109892464 7 - TSS region transcription start site region 91590
Tssr87262 9 109896437 to 109896441 4 + TSS region transcription start site region 87262
Tssr91591 9 109902341 to 109902347 6 - TSS region transcription start site region 91591
D9Dcr115 9 109921368 to 109921463 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 115
Gm4644 9 109924351 to 109924750 399 - pseudogene predicted gene 4644
Cpgi22368 9 109931308 to 109932623 1315 CpG island CpG island 22368
Tssr87263 9 109931463 to 109931488 25 + TSS region transcription start site region 87263
Map4 9 109931489 to 110083954 152465 + protein coding gene microtubule-associated protein 4
Tssr87264 9 109931492 to 109931515 23 + TSS region transcription start site region 87264
Tssr87265 9 109931542 to 109931552 10 + TSS region transcription start site region 87265
Tssr87266 9 109931575 to 109931578 3 + TSS region transcription start site region 87266
Tssr87267 9 109931774 to 109931798 24 + TSS region transcription start site region 87267
Tssr87268 9 109931809 to 109931835 26 + TSS region transcription start site region 87268
Tssr87269 9 109931836 to 109931853 17 + TSS region transcription start site region 87269
Tssr87270 9 109931863 to 109931885 22 + TSS region transcription start site region 87270
Tssr3018 9 109931887 to 109931892 5 + TSS region transcription start site region 3018
Tssr87271 9 109931894 to 109931915 21 + TSS region transcription start site region 87271
Tssr87272 9 109937222 to 109937238 16 + TSS region transcription start site region 87272
Tssr87273 9 109945915 to 109945934 19 + TSS region transcription start site region 87273
Tssr87274 9 109945972 to 109945995 23 + TSS region transcription start site region 87274
Tssr87275 9 109948277 to 109948281 4 + TSS region transcription start site region 87275
Tssr87276 9 109958600 to 109958605 5 + TSS region transcription start site region 87276
Tssr87277 9 109968971 to 109968982 11 + TSS region transcription start site region 87277
Tssr87278 9 109969004 to 109969031 27 + TSS region transcription start site region 87278
Tssr87279 9 109969032 to 109969037 5 + TSS region transcription start site region 87279
Gm4734 9 109970433 to 109971209 776 + pseudogene predicted gene 4734
Gm43732 9 109988967 to 109991834 2867 - antisense lncRNA gene predicted gene 43732
Tssr87280 9 109999763 to 109999813 50 + TSS region transcription start site region 87280
Tssr87281 9 110003176 to 110003192 16 + TSS region transcription start site region 87281
Tssr87282 9 110003443 to 110003448 5 + TSS region transcription start site region 87282