Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108990568-109200600

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38004 9 108991214 to 108991570 356 - lincRNA gene predicted gene, 38004
Tssr91563 9 108991563 to 108991583 20 - TSS region transcription start site region 91563
Pfkfb4 9 108991778 to 109032228 40450 + protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Cpgi22361 9 108991832 to 108992334 502 CpG island CpG island 22361
Tssr87190 9 108991952 to 108991969 17 + TSS region transcription start site region 87190
Tssr87191 9 108991982 to 108992002 20 + TSS region transcription start site region 87191
Tssr87192 9 109007544 to 109007587 43 + TSS region transcription start site region 87192
Tssr87193 9 109007884 to 109007916 32 + TSS region transcription start site region 87193
Tssr87194 9 109017372 to 109017398 26 + TSS region transcription start site region 87194
Cpgi22362 9 109038456 to 109038909 453 CpG island CpG island 22362
Shisa5 9 109038565 to 109057777 19212 + protein coding gene shisa family member 5
Tssr87195 9 109038575 to 109038644 69 + TSS region transcription start site region 87195
Tssr91564 9 109039150 to 109039178 28 - TSS region transcription start site region 91564
Tssr87196 9 109040859 to 109040907 48 + TSS region transcription start site region 87196
Tssr91565 9 109040903 to 109040915 12 - TSS region transcription start site region 91565
Tssr87197 9 109050862 to 109050900 38 + TSS region transcription start site region 87197
Tssr87198 9 109051090 to 109051104 14 + TSS region transcription start site region 87198
Tssr87199 9 109051153 to 109051219 66 + TSS region transcription start site region 87199
Tssr87200 9 109051355 to 109051392 37 + TSS region transcription start site region 87200
Tssr91566 9 109051675 to 109051687 12 - TSS region transcription start site region 91566
Tssr91567 9 109051705 to 109051715 10 - TSS region transcription start site region 91567
Tssr87201 9 109051952 to 109051975 23 + TSS region transcription start site region 87201
Tssr87202 9 109051983 to 109051993 10 + TSS region transcription start site region 87202
Tssr87203 9 109051998 to 109052003 5 + TSS region transcription start site region 87203
Tssr91568 9 109052460 to 109052464 4 - TSS region transcription start site region 91568
Tssr91569 9 109052689 to 109052714 25 - TSS region transcription start site region 91569
Tssr87204 9 109052828 to 109052864 36 + TSS region transcription start site region 87204
Tssr87205 9 109052867 to 109052880 13 + TSS region transcription start site region 87205
Tssr87206 9 109052882 to 109052903 21 + TSS region transcription start site region 87206
Tssr91570 9 109054783 to 109054796 13 - TSS region transcription start site region 91570
Tssr87207 9 109054839 to 109054871 32 + TSS region transcription start site region 87207
Tssr87208 9 109054881 to 109054901 20 + TSS region transcription start site region 87208
Tssr87209 9 109054903 to 109054990 87 + TSS region transcription start site region 87209
Tssr87210 9 109055029 to 109055040 11 + TSS region transcription start site region 87210
Tssr87211 9 109055102 to 109055114 12 + TSS region transcription start site region 87211
Tssr87212 9 109055597 to 109055633 36 + TSS region transcription start site region 87212
Tssr87213 9 109055972 to 109055991 19 + TSS region transcription start site region 87213
Tssr87214 9 109056014 to 109056063 49 + TSS region transcription start site region 87214
Tssr87215 9 109056277 to 109056294 17 + TSS region transcription start site region 87215
Tssr87216 9 109056313 to 109056347 34 + TSS region transcription start site region 87216
Tssr87217 9 109056383 to 109056420 37 + TSS region transcription start site region 87217
Tssr87218 9 109056637 to 109056720 83 + TSS region transcription start site region 87218
Tssr87219 9 109056938 to 109056953 15 + TSS region transcription start site region 87219
Tssr87220 9 109057024 to 109057041 17 + TSS region transcription start site region 87220
Tssr87221 9 109057248 to 109057260 12 + TSS region transcription start site region 87221
Tssr87222 9 109057295 to 109057309 14 + TSS region transcription start site region 87222
Tssr91571 9 109057715 to 109057723 8 - TSS region transcription start site region 91571
Trex1 9 109057932 to 109059723 1791 - protein coding gene three prime repair exonuclease 1
Tssr91572 9 109058236 to 109058271 35 - TSS region transcription start site region 91572
Tssr91573 9 109058393 to 109058405 12 - TSS region transcription start site region 91573
Tssr91574 9 109058623 to 109058638 15 - TSS region transcription start site region 91574
Tssr91575 9 109058674 to 109058685 11 - TSS region transcription start site region 91575
Tssr91576 9 109058759 to 109058771 12 - TSS region transcription start site region 91576
Tssr91577 9 109059216 to 109059259 43 - TSS region transcription start site region 91577
Tssr91578 9 109059676 to 109059706 30 - TSS region transcription start site region 91578
Tssr91579 9 109059711 to 109059771 60 - TSS region transcription start site region 91579
Atrip 9 109059747 to 109074530 14783 - protein coding gene ATR interacting protein
Tssr91580 9 109071714 to 109071718 4 - TSS region transcription start site region 91580
Cpgi22363 9 109073674 to 109074460 786 CpG island CpG island 22363
Tssr91581 9 109074049 to 109074140 91 - TSS region transcription start site region 91581
Tma7 9 109077988 to 109082381 4393 - protein coding gene translational machinery associated 7
Cpgi22364 9 109082080 to 109082722 642 CpG island CpG island 22364
Tssr91582 9 109082372 to 109082414 42 - TSS region transcription start site region 91582
Tssr87223 9 109082485 to 109082535 50 + TSS region transcription start site region 87223
Ccdc51 9 109082493 to 109092489 9996 + protein coding gene coiled-coil domain containing 51
Gm7628 9 109093844 to 109097796 3952 - antisense lncRNA gene predicted gene 7628
Tssr3014 9 109094385 to 109094404 19 + TSS region transcription start site region 3014
Tssr87224 9 109094506 to 109094515 9 + TSS region transcription start site region 87224
Cpgi22365 9 109094537 to 109096202 1665 CpG island CpG island 22365
Tssr87225 9 109094835 to 109094850 15 + TSS region transcription start site region 87225
Tssr87226 9 109095250 to 109095271 21 + TSS region transcription start site region 87226
Plxnb1 9 109095389 to 109119917 24528 + protein coding gene plexin B1
Tssr87227 9 109095398 to 109095411 13 + TSS region transcription start site region 87227
Tssr87228 9 109095427 to 109095453 26 + TSS region transcription start site region 87228
Tssr87229 9 109095535 to 109095547 12 + TSS region transcription start site region 87229
Tssr87230 9 109095568 to 109095600 32 + TSS region transcription start site region 87230
Tssr87231 9 109095604 to 109095609 5 + TSS region transcription start site region 87231
Tssr91583 9 109095775 to 109095804 29 - TSS region transcription start site region 91583
Tssr91584 9 109095813 to 109095826 13 - TSS region transcription start site region 91584
Tssr87232 9 109096659 to 109096662 3 + TSS region transcription start site region 87232
Tssr87233 9 109102789 to 109102802 13 + TSS region transcription start site region 87233
Tssr87234 9 109103544 to 109103583 39 + TSS region transcription start site region 87234
Tssr87235 9 109105284 to 109105327 43 + TSS region transcription start site region 87235
Gm39423 9 109122637 to 109125907 3270 + lncRNA gene predicted gene, 39423
Fbxw21 9 109139454 to 109162022 22568 - protein coding gene F-box and WD-40 domain protein 21
Fbxw13 9 109179227 to 109195975 16748 - protein coding gene F-box and WD-40 domain protein 13