Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108971778-109052228

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col7a1 9 108953586 to 108984875 31289 + protein coding gene collagen, type VII, alpha 1
Tssr87181 9 108982948 to 108982968 20 + TSS region transcription start site region 87181
Tssr87182 9 108982975 to 108982996 21 + TSS region transcription start site region 87182
Tssr87183 9 108983004 to 108983026 22 + TSS region transcription start site region 87183
Tssr87184 9 108984882 to 108984899 17 + TSS region transcription start site region 87184
Tssr87185 9 108985163 to 108985181 18 + TSS region transcription start site region 87185
Ucn2 9 108986163 to 108987164 1001 + protein coding gene urocortin 2
Tssr87186 9 108987890 to 108987902 12 + TSS region transcription start site region 87186
Tssr87187 9 108988307 to 108988364 57 + TSS region transcription start site region 87187
Tssr87188 9 108989837 to 108989849 12 + TSS region transcription start site region 87188
Tssr87189 9 108989928 to 108989958 30 + TSS region transcription start site region 87189
Gm38004 9 108991214 to 108991570 356 - lincRNA gene predicted gene, 38004
Tssr91563 9 108991563 to 108991583 20 - TSS region transcription start site region 91563
Pfkfb4 9 108991778 to 109032228 40450 + protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Cpgi22361 9 108991832 to 108992334 502 CpG island CpG island 22361
Tssr87190 9 108991952 to 108991969 17 + TSS region transcription start site region 87190
Tssr87191 9 108991982 to 108992002 20 + TSS region transcription start site region 87191
Tssr87192 9 109007544 to 109007587 43 + TSS region transcription start site region 87192
Tssr87193 9 109007884 to 109007916 32 + TSS region transcription start site region 87193
Tssr87194 9 109017372 to 109017398 26 + TSS region transcription start site region 87194
Cpgi22362 9 109038456 to 109038909 453 CpG island CpG island 22362
Shisa5 9 109038565 to 109057777 19212 + protein coding gene shisa family member 5
Tssr87195 9 109038575 to 109038644 69 + TSS region transcription start site region 87195
Tssr91564 9 109039150 to 109039178 28 - TSS region transcription start site region 91564
Tssr87196 9 109040859 to 109040907 48 + TSS region transcription start site region 87196
Tssr91565 9 109040903 to 109040915 12 - TSS region transcription start site region 91565
Tssr87197 9 109050862 to 109050900 38 + TSS region transcription start site region 87197
Tssr87198 9 109051090 to 109051104 14 + TSS region transcription start site region 87198
Tssr87199 9 109051153 to 109051219 66 + TSS region transcription start site region 87199
Tssr87200 9 109051355 to 109051392 37 + TSS region transcription start site region 87200
Tssr91566 9 109051675 to 109051687 12 - TSS region transcription start site region 91566
Tssr91567 9 109051705 to 109051715 10 - TSS region transcription start site region 91567
Tssr87201 9 109051952 to 109051975 23 + TSS region transcription start site region 87201
Tssr87202 9 109051983 to 109051993 10 + TSS region transcription start site region 87202
Tssr87203 9 109051998 to 109052003 5 + TSS region transcription start site region 87203