Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108629835-109559850

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217 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arih2 9 108602942 to 108649386 46444 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 2
Tssr91545 9 108636457 to 108636494 37 - TSS region transcription start site region 91545
8030474H12Rik 9 108639116 to 108641365 2249 unclassified gene RIKEN cDNA 8030474H12 gene
Skmw11 9 108641084 to 108641186 102 QTL skeletal muscle weight 11
Hctq7 9 108641084 to 108641186 102 QTL hematocrit QTL 7
Mchcq2 9 108641084 to 108641186 102 QTL mean corpuscular hemoglobin concentration QTL 2
Mchq18 9 108641084 to 108641186 102 QTL mean corpuscular hemoglobin QTL 18
Rbc9 9 108641084 to 108641186 102 QTL red blood cell count 9
Hbbcq5 9 108641084 to 108641186 102 QTL hemoglobin concentration QTL 5
D9Mit212 9 108641084 to 108641186 102 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 212
D9Mit116 9 108641085 to 108641214 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 116
cir 9 108641085 to 111021636 2380551 heritable phenotypic marker circling
D9Dcr113 9 108641087 to 108641194 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 113
Msam3 9 108641186 to 85897510 -22743676 QTL muscle, skeletal, activity measure 3
Tssr3012 9 108648313 to 108648334 21 + TSS region transcription start site region 3012
Cpgi22349 9 108648459 to 108649645 1186 CpG island CpG island 22349
Tssr91546 9 108648615 to 108648624 9 - TSS region transcription start site region 91546
Tssr87146 9 108648720 to 108648733 13 + TSS region transcription start site region 87146
Tssr91547 9 108648763 to 108648771 8 - TSS region transcription start site region 91547
Tssr91548 9 108649061 to 108649073 12 - TSS region transcription start site region 91548
Tssr91549 9 108649291 to 108649306 15 - TSS region transcription start site region 91549
Tssr91550 9 108649309 to 108649323 14 - TSS region transcription start site region 91550
Tssr91551 9 108649349 to 108649407 58 - TSS region transcription start site region 91551
Tssr87147 9 108649434 to 108649502 68 + TSS region transcription start site region 87147
Tssr91552 9 108649564 to 108649569 5 - TSS region transcription start site region 91552
Tssr91553 9 108649600 to 108649609 9 - TSS region transcription start site region 91553
Tssr91554 9 108649660 to 108649671 11 - TSS region transcription start site region 91554
Tssr87148 9 108649814 to 108649818 4 + TSS region transcription start site region 87148
Tssr87149 9 108650113 to 108650120 7 + TSS region transcription start site region 87149
Tssr87150 9 108650134 to 108650145 11 + TSS region transcription start site region 87150
Gm26298 9 108653608 to 108653728 120 - miRNA gene predicted gene, 26298
Tssr91555 9 108654699 to 108654736 37 - TSS region transcription start site region 91555
Tssr91556 9 108655867 to 108655872 5 - TSS region transcription start site region 91556
Cpgi22350 9 108662021 to 108662372 351 CpG island CpG island 22350
Tssr87151 9 108662084 to 108662093 9 + TSS region transcription start site region 87151
Slc25a20 9 108662098 to 108684641 22543 + protein coding gene solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
Tssr87152 9 108662099 to 108662219 120 + TSS region transcription start site region 87152
Tssr87153 9 108682412 to 108682420 8 + TSS region transcription start site region 87153
Edlmmq9 9 108683173 to 108683173 0 QTL extensor digitorum longus muscle mass QTL 9
Gmmq7 9 108683173 to 108683173 0 QTL gastrocnemius muscle mass QTL 7
Tammq7 9 108683173 to 108683173 0 QTL tibialis anterior muscle mass QTL 7
Tssr87154 9 108689335 to 108689353 18 + TSS region transcription start site region 87154
Cpgi22351 9 108691683 to 108693140 1457 CpG island CpG island 22351
Tssr87155 9 108692116 to 108692193 77 + TSS region transcription start site region 87155
Prkar2a 9 108692143 to 108749512 57369 + protein coding gene protein kinase, cAMP dependent regulatory, type II alpha
Tssr87156 9 108692202 to 108692212 10 + TSS region transcription start site region 87156
Tssr87157 9 108692290 to 108692312 22 + TSS region transcription start site region 87157
Gm24259 9 108738752 to 108738858 106 - snRNA gene predicted gene, 24259
Tssr87158 9 108739706 to 108739710 4 + TSS region transcription start site region 87158
Cpgi22352 9 108783512 to 108784434 922 CpG island CpG island 22352
Tssr87159 9 108783790 to 108783844 54 + TSS region transcription start site region 87159
Ip6k2 9 108783796 to 108806337 22541 + protein coding gene inositol hexaphosphate kinase 2
Tssr87160 9 108786088 to 108786092 4 + TSS region transcription start site region 87160
Gm23034 9 108795242 to 108795388 146 - snoRNA gene predicted gene, 23034
Tssr87161 9 108795971 to 108795994 23 + TSS region transcription start site region 87161
Cpgi22353 9 108807901 to 108809066 1165 CpG island CpG island 22353
Tssr87162 9 108808340 to 108808351 11 + TSS region transcription start site region 87162
Nckipsd 9 108808346 to 108818453 10107 + protein coding gene NCK interacting protein with SH3 domain
Tssr87163 9 108808356 to 108808441 85 + TSS region transcription start site region 87163
Gm35025 9 108823938 to 108825098 1160 - lncRNA gene predicted gene, 35025
Cpgi22354 9 108824175 to 108824670 495 CpG island CpG island 22354
Tssr91557 9 108824814 to 108824855 41 - TSS region transcription start site region 91557
Cpgi22355 9 108824852 to 108825449 597 CpG island CpG island 22355
Gm37714 9 108825349 to 108825690 341 + unclassified gene predicted gene, 37714
Cpgi22356 9 108825751 to 108828234 2483 CpG island CpG island 22356
Tssr87164 9 108826026 to 108826074 48 + TSS region transcription start site region 87164
Celsr3 9 108826320 to 108852969 26649 + protein coding gene cadherin, EGF LAG seven-pass G-type receptor 3
Cpgi22357 9 108831616 to 108833221 1605 CpG island CpG island 22357
Tssr3013 9 108831824 to 108831881 57 + TSS region transcription start site region 3013
Cpgi22358 9 108842914 to 108843267 353 CpG island CpG island 22358
Gm23156 9 108844478 to 108844563 85 + miRNA gene predicted gene, 23156
Cpgi22359 9 108853833 to 108854755 922 CpG island CpG island 22359
Tssr87165 9 108854024 to 108854065 41 + TSS region transcription start site region 87165
Slc26a6 9 108854043 to 108913049 59006 + protein coding gene solute carrier family 26, member 6
Tssr87166 9 108854069 to 108854084 15 + TSS region transcription start site region 87166
Tssr87167 9 108854089 to 108854110 21 + TSS region transcription start site region 87167
Tssr91558 9 108854560 to 108854571 11 - TSS region transcription start site region 91558
Tssr91559 9 108854575 to 108854600 25 - TSS region transcription start site region 91559
Tssr87168 9 108854686 to 108854706 20 + TSS region transcription start site region 87168
Tssr87169 9 108854711 to 108854738 27 + TSS region transcription start site region 87169
Tssr91560 9 108855295 to 108855312 17 - TSS region transcription start site region 91560
Tssr87170 9 108855530 to 108855537 7 + TSS region transcription start site region 87170
Tssr87171 9 108855614 to 108855648 34 + TSS region transcription start site region 87171
Tssr87172 9 108914598 to 108914611 13 + TSS region transcription start site region 87172
Tmem89 9 108914619 to 108915563 944 + protein coding gene transmembrane protein 89
Tssr87173 9 108914622 to 108914635 13 + TSS region transcription start site region 87173
Tssr87174 9 108914650 to 108914657 7 + TSS region transcription start site region 87174
Adip20d 9 108915010 to 118915010 10000000 QTL adiposity 20d
Tssr87175 9 108926604 to 108926624 20 + TSS region transcription start site region 87175
Cpgi22360 9 108936370 to 108937347 977 CpG island CpG island 22360
Uqcrc1 9 108936633 to 108949623 12990 + protein coding gene ubiquinol-cytochrome c reductase core protein 1
Tssr87176 9 108936685 to 108936715 30 + TSS region transcription start site region 87176
Tssr87177 9 108937040 to 108937060 20 + TSS region transcription start site region 87177
Tssr91561 9 108937170 to 108937182 12 - TSS region transcription start site region 91561
Tssr91562 9 108937189 to 108937218 29 - TSS region transcription start site region 91562
Tssr87178 9 108945352 to 108945414 62 + TSS region transcription start site region 87178
Gm37284 9 108950003 to 108950541 538 - unclassified gene predicted gene, 37284
Tssr87179 9 108953578 to 108953593 15 + TSS region transcription start site region 87179
Col7a1 9 108953586 to 108984875 31289 + protein coding gene collagen, type VII, alpha 1
Tssr87180 9 108953597 to 108953609 12 + TSS region transcription start site region 87180
Mir711 9 108969922 to 108970003 81 + miRNA gene microRNA 711
Tssr87181 9 108982948 to 108982968 20 + TSS region transcription start site region 87181
Tssr87182 9 108982975 to 108982996 21 + TSS region transcription start site region 87182
Tssr87183 9 108983004 to 108983026 22 + TSS region transcription start site region 87183
Tssr87184 9 108984882 to 108984899 17 + TSS region transcription start site region 87184
Tssr87185 9 108985163 to 108985181 18 + TSS region transcription start site region 87185
Ucn2 9 108986163 to 108987164 1001 + protein coding gene urocortin 2
Tssr87186 9 108987890 to 108987902 12 + TSS region transcription start site region 87186
Tssr87187 9 108988307 to 108988364 57 + TSS region transcription start site region 87187
Tssr87188 9 108989837 to 108989849 12 + TSS region transcription start site region 87188
Tssr87189 9 108989928 to 108989958 30 + TSS region transcription start site region 87189
Gm38004 9 108991214 to 108991570 356 - lincRNA gene predicted gene, 38004
Tssr91563 9 108991563 to 108991583 20 - TSS region transcription start site region 91563
Pfkfb4 9 108991778 to 109032228 40450 + protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Cpgi22361 9 108991832 to 108992334 502 CpG island CpG island 22361
Tssr87190 9 108991952 to 108991969 17 + TSS region transcription start site region 87190
Tssr87191 9 108991982 to 108992002 20 + TSS region transcription start site region 87191
Tssr87192 9 109007544 to 109007587 43 + TSS region transcription start site region 87192
Tssr87193 9 109007884 to 109007916 32 + TSS region transcription start site region 87193
Tssr87194 9 109017372 to 109017398 26 + TSS region transcription start site region 87194
Cpgi22362 9 109038456 to 109038909 453 CpG island CpG island 22362
Shisa5 9 109038565 to 109057777 19212 + protein coding gene shisa family member 5
Tssr87195 9 109038575 to 109038644 69 + TSS region transcription start site region 87195
Tssr91564 9 109039150 to 109039178 28 - TSS region transcription start site region 91564
Tssr87196 9 109040859 to 109040907 48 + TSS region transcription start site region 87196
Tssr91565 9 109040903 to 109040915 12 - TSS region transcription start site region 91565
Tssr87197 9 109050862 to 109050900 38 + TSS region transcription start site region 87197
Tssr87198 9 109051090 to 109051104 14 + TSS region transcription start site region 87198
Tssr87199 9 109051153 to 109051219 66 + TSS region transcription start site region 87199
Tssr87200 9 109051355 to 109051392 37 + TSS region transcription start site region 87200
Tssr91566 9 109051675 to 109051687 12 - TSS region transcription start site region 91566
Tssr91567 9 109051705 to 109051715 10 - TSS region transcription start site region 91567
Tssr87201 9 109051952 to 109051975 23 + TSS region transcription start site region 87201
Tssr87202 9 109051983 to 109051993 10 + TSS region transcription start site region 87202
Tssr87203 9 109051998 to 109052003 5 + TSS region transcription start site region 87203
Tssr91568 9 109052460 to 109052464 4 - TSS region transcription start site region 91568
Tssr91569 9 109052689 to 109052714 25 - TSS region transcription start site region 91569
Tssr87204 9 109052828 to 109052864 36 + TSS region transcription start site region 87204
Tssr87205 9 109052867 to 109052880 13 + TSS region transcription start site region 87205
Tssr87206 9 109052882 to 109052903 21 + TSS region transcription start site region 87206
Tssr91570 9 109054783 to 109054796 13 - TSS region transcription start site region 91570
Tssr87207 9 109054839 to 109054871 32 + TSS region transcription start site region 87207
Tssr87208 9 109054881 to 109054901 20 + TSS region transcription start site region 87208
Tssr87209 9 109054903 to 109054990 87 + TSS region transcription start site region 87209
Tssr87210 9 109055029 to 109055040 11 + TSS region transcription start site region 87210
Tssr87211 9 109055102 to 109055114 12 + TSS region transcription start site region 87211
Tssr87212 9 109055597 to 109055633 36 + TSS region transcription start site region 87212
Tssr87213 9 109055972 to 109055991 19 + TSS region transcription start site region 87213
Tssr87214 9 109056014 to 109056063 49 + TSS region transcription start site region 87214
Tssr87215 9 109056277 to 109056294 17 + TSS region transcription start site region 87215
Tssr87216 9 109056313 to 109056347 34 + TSS region transcription start site region 87216
Tssr87217 9 109056383 to 109056420 37 + TSS region transcription start site region 87217
Tssr87218 9 109056637 to 109056720 83 + TSS region transcription start site region 87218
Tssr87219 9 109056938 to 109056953 15 + TSS region transcription start site region 87219
Tssr87220 9 109057024 to 109057041 17 + TSS region transcription start site region 87220
Tssr87221 9 109057248 to 109057260 12 + TSS region transcription start site region 87221
Tssr87222 9 109057295 to 109057309 14 + TSS region transcription start site region 87222
Tssr91571 9 109057715 to 109057723 8 - TSS region transcription start site region 91571
Trex1 9 109057932 to 109059723 1791 - protein coding gene three prime repair exonuclease 1
Tssr91572 9 109058236 to 109058271 35 - TSS region transcription start site region 91572
Tssr91573 9 109058393 to 109058405 12 - TSS region transcription start site region 91573
Tssr91574 9 109058623 to 109058638 15 - TSS region transcription start site region 91574
Tssr91575 9 109058674 to 109058685 11 - TSS region transcription start site region 91575
Tssr91576 9 109058759 to 109058771 12 - TSS region transcription start site region 91576
Tssr91577 9 109059216 to 109059259 43 - TSS region transcription start site region 91577
Tssr91578 9 109059676 to 109059706 30 - TSS region transcription start site region 91578
Tssr91579 9 109059711 to 109059771 60 - TSS region transcription start site region 91579
Atrip 9 109059747 to 109074530 14783 - protein coding gene ATR interacting protein
Tssr91580 9 109071714 to 109071718 4 - TSS region transcription start site region 91580
Cpgi22363 9 109073674 to 109074460 786 CpG island CpG island 22363
Tssr91581 9 109074049 to 109074140 91 - TSS region transcription start site region 91581
Tma7 9 109077988 to 109082381 4393 - protein coding gene translational machinery associated 7
Cpgi22364 9 109082080 to 109082722 642 CpG island CpG island 22364
Tssr91582 9 109082372 to 109082414 42 - TSS region transcription start site region 91582
Tssr87223 9 109082485 to 109082535 50 + TSS region transcription start site region 87223
Ccdc51 9 109082493 to 109092489 9996 + protein coding gene coiled-coil domain containing 51
Gm7628 9 109093844 to 109097796 3952 - antisense lncRNA gene predicted gene 7628
Tssr3014 9 109094385 to 109094404 19 + TSS region transcription start site region 3014
Tssr87224 9 109094506 to 109094515 9 + TSS region transcription start site region 87224
Cpgi22365 9 109094537 to 109096202 1665 CpG island CpG island 22365
Tssr87225 9 109094835 to 109094850 15 + TSS region transcription start site region 87225
Tssr87226 9 109095250 to 109095271 21 + TSS region transcription start site region 87226
Plxnb1 9 109095389 to 109119917 24528 + protein coding gene plexin B1
Tssr87227 9 109095398 to 109095411 13 + TSS region transcription start site region 87227
Tssr87228 9 109095427 to 109095453 26 + TSS region transcription start site region 87228
Tssr87229 9 109095535 to 109095547 12 + TSS region transcription start site region 87229
Tssr87230 9 109095568 to 109095600 32 + TSS region transcription start site region 87230
Tssr87231 9 109095604 to 109095609 5 + TSS region transcription start site region 87231
Tssr91583 9 109095775 to 109095804 29 - TSS region transcription start site region 91583
Tssr91584 9 109095813 to 109095826 13 - TSS region transcription start site region 91584
Tssr87232 9 109096659 to 109096662 3 + TSS region transcription start site region 87232
Tssr87233 9 109102789 to 109102802 13 + TSS region transcription start site region 87233
Tssr87234 9 109103544 to 109103583 39 + TSS region transcription start site region 87234
Tssr87235 9 109105284 to 109105327 43 + TSS region transcription start site region 87235
Gm39423 9 109122637 to 109125907 3270 + lncRNA gene predicted gene, 39423
Fbxw21 9 109139454 to 109162022 22568 - protein coding gene F-box and WD-40 domain protein 21
Fbxw13 9 109179227 to 109195975 16748 - protein coding gene F-box and WD-40 domain protein 13
Fbxw20 9 109217432 to 109234754 17322 - protein coding gene F-box and WD-40 domain protein 20
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13
Fbxw14 9 109270975 to 109287729 16754 - protein coding gene F-box and WD-40 domain protein 14