Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108517136-108829642

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22342 9 108516560 to 108518114 1554 CpG island CpG island 22342
Qrich1 9 108517087 to 108560167 43080 + protein coding gene glutamine-rich 1
Tssr87126 9 108517127 to 108517141 14 + TSS region transcription start site region 87126
Tssr87127 9 108517159 to 108517170 11 + TSS region transcription start site region 87127
Tssr87128 9 108517516 to 108517527 11 + TSS region transcription start site region 87128
Tssr87129 9 108517566 to 108517620 54 + TSS region transcription start site region 87129
Tssr87130 9 108517684 to 108517706 22 + TSS region transcription start site region 87130
Tssr87131 9 108517712 to 108517724 12 + TSS region transcription start site region 87131
Tssr87132 9 108517745 to 108517756 11 + TSS region transcription start site region 87132
Tssr91531 9 108518204 to 108518229 25 - TSS region transcription start site region 91531
Tssr87133 9 108524655 to 108524659 4 + TSS region transcription start site region 87133
Gm38366 9 108530832 to 108532765 1933 + unclassified gene predicted gene, 38366
Tssr87134 9 108533585 to 108533609 24 + TSS region transcription start site region 87134
Tssr87135 9 108534192 to 108534246 54 + TSS region transcription start site region 87135
Gm37678 9 108544214 to 108545359 1145 + unclassified gene predicted gene, 37678
Tssr87136 9 108548426 to 108548430 4 + TSS region transcription start site region 87136
D630038D15Rik 9 108550612 to 108551474 862 unclassified gene RIKEN cDNA D630038D15 gene
Tssr87137 9 108559753 to 108559815 62 + TSS region transcription start site region 87137
Tssr87138 9 108559857 to 108559862 5 + TSS region transcription start site region 87138
Tssr87139 9 108560012 to 108560044 32 + TSS region transcription start site region 87139
Cpgi22343 9 108560149 to 108560911 762 CpG island CpG island 22343
Impdh2 9 108560291 to 108565577 5286 + protein coding gene inosine monophosphate dehydrogenase 2
Tssr87140 9 108560422 to 108560451 29 + TSS region transcription start site region 87140
Ndufaf3 9 108565865 to 108567342 1477 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 3
Cpgi22344 9 108566445 to 108568176 1731 CpG island CpG island 22344
Tssr91532 9 108566866 to 108566877 11 - TSS region transcription start site region 91532
Tssr91533 9 108566894 to 108566905 11 - TSS region transcription start site region 91533
Tssr91534 9 108566927 to 108566978 51 - TSS region transcription start site region 91534
Tssr91535 9 108567277 to 108567302 25 - TSS region transcription start site region 91535
Tssr91536 9 108567314 to 108567333 19 - TSS region transcription start site region 91536
Tssr91537 9 108567336 to 108567359 23 - TSS region transcription start site region 91537
Tssr91538 9 108567362 to 108567449 87 - TSS region transcription start site region 91538
Tssr87141 9 108567484 to 108567497 13 + TSS region transcription start site region 87141
Tssr87142 9 108567526 to 108567540 14 + TSS region transcription start site region 87142
4833445I07Rik 9 108567533 to 108569174 1641 + lincRNA gene RIKEN cDNA 4833445I07 gene
Tssr91539 9 108567580 to 108567595 15 - TSS region transcription start site region 91539
Tssr87143 9 108568018 to 108568059 41 + TSS region transcription start site region 87143
Gm24083 9 108568295 to 108568414 119 - miRNA gene predicted gene, 24083
Mir191 9 108568319 to 108568392 73 + miRNA gene microRNA 191
Cpgi22345 9 108568701 to 108568885 184 CpG island CpG island 22345
Mir425 9 108568777 to 108568861 84 + miRNA gene microRNA 425
Cpgi22346 9 108569744 to 108570986 1242 CpG island CpG island 22346
Tssr87144 9 108569885 to 108569943 58 + TSS region transcription start site region 87144
Dalrd3 9 108569886 to 108572774 2888 + protein coding gene DALR anticodon binding domain containing 3
Tssr87145 9 108569951 to 108569960 9 + TSS region transcription start site region 87145
Wdr6 9 108572313 to 108578670 6357 - protein coding gene WD repeat domain 6
Cpgi22347 9 108578190 to 108579297 1107 CpG island CpG island 22347
Tssr91540 9 108578594 to 108578656 62 - TSS region transcription start site region 91540
Tssr91541 9 108578657 to 108578675 18 - TSS region transcription start site region 91541
Tssr91542 9 108578677 to 108578691 14 - TSS region transcription start site region 91542
Tssr91543 9 108578701 to 108578721 20 - TSS region transcription start site region 91543
P4htm 9 108578862 to 108597667 18805 - protein coding gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
Gm38163 9 108584756 to 108585361 605 - sense intronic lncRNA gene predicted gene, 38163
Gm49209 9 108587052 to 108589545 2493 + pseudogene predicted gene, 49209
Cpgi22348 9 108596915 to 108597860 945 CpG island CpG island 22348
Tssr91544 9 108597558 to 108597604 46 - TSS region transcription start site region 91544
Arih2 9 108602942 to 108649386 46444 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 2
D9Dcr112 9 108623129 to 108623234 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 112
Tssr91545 9 108636457 to 108636494 37 - TSS region transcription start site region 91545
8030474H12Rik 9 108639116 to 108641365 2249 unclassified gene RIKEN cDNA 8030474H12 gene
Hbbcq5 9 108641084 to 108641186 102 QTL hemoglobin concentration QTL 5
Hctq7 9 108641084 to 108641186 102 QTL hematocrit QTL 7
Rbc9 9 108641084 to 108641186 102 QTL red blood cell count 9
Skmw11 9 108641084 to 108641186 102 QTL skeletal muscle weight 11
D9Mit212 9 108641084 to 108641186 102 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 212
Mchcq2 9 108641084 to 108641186 102 QTL mean corpuscular hemoglobin concentration QTL 2
Mchq18 9 108641084 to 108641186 102 QTL mean corpuscular hemoglobin QTL 18
D9Mit116 9 108641085 to 108641214 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 116
cir 9 108641085 to 111021636 2380551 heritable phenotypic marker circling
D9Dcr113 9 108641087 to 108641194 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 113
Msam3 9 108641186 to 85897510 -22743676 QTL muscle, skeletal, activity measure 3
Tssr3012 9 108648313 to 108648334 21 + TSS region transcription start site region 3012
Cpgi22349 9 108648459 to 108649645 1186 CpG island CpG island 22349
Tssr91546 9 108648615 to 108648624 9 - TSS region transcription start site region 91546
Tssr87146 9 108648720 to 108648733 13 + TSS region transcription start site region 87146
Tssr91547 9 108648763 to 108648771 8 - TSS region transcription start site region 91547
Tssr91548 9 108649061 to 108649073 12 - TSS region transcription start site region 91548
Tssr91549 9 108649291 to 108649306 15 - TSS region transcription start site region 91549
Tssr91550 9 108649309 to 108649323 14 - TSS region transcription start site region 91550
Tssr91551 9 108649349 to 108649407 58 - TSS region transcription start site region 91551
Tssr87147 9 108649434 to 108649502 68 + TSS region transcription start site region 87147
Tssr91552 9 108649564 to 108649569 5 - TSS region transcription start site region 91552
Tssr91553 9 108649600 to 108649609 9 - TSS region transcription start site region 91553
Tssr91554 9 108649660 to 108649671 11 - TSS region transcription start site region 91554
Tssr87148 9 108649814 to 108649818 4 + TSS region transcription start site region 87148
Tssr87149 9 108650113 to 108650120 7 + TSS region transcription start site region 87149
Tssr87150 9 108650134 to 108650145 11 + TSS region transcription start site region 87150
Gm26298 9 108653608 to 108653728 120 - miRNA gene predicted gene, 26298
Tssr91555 9 108654699 to 108654736 37 - TSS region transcription start site region 91555
Tssr91556 9 108655867 to 108655872 5 - TSS region transcription start site region 91556
Cpgi22350 9 108662021 to 108662372 351 CpG island CpG island 22350
Tssr87151 9 108662084 to 108662093 9 + TSS region transcription start site region 87151
Slc25a20 9 108662098 to 108684641 22543 + protein coding gene solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
Tssr87152 9 108662099 to 108662219 120 + TSS region transcription start site region 87152
Tssr87153 9 108682412 to 108682420 8 + TSS region transcription start site region 87153
Gmmq7 9 108683173 to 108683173 0 QTL gastrocnemius muscle mass QTL 7
Tammq7 9 108683173 to 108683173 0 QTL tibialis anterior muscle mass QTL 7
Edlmmq9 9 108683173 to 108683173 0 QTL extensor digitorum longus muscle mass QTL 9
Tssr87154 9 108689335 to 108689353 18 + TSS region transcription start site region 87154
Cpgi22351 9 108691683 to 108693140 1457 CpG island CpG island 22351
Tssr87155 9 108692116 to 108692193 77 + TSS region transcription start site region 87155
Prkar2a 9 108692143 to 108749512 57369 + protein coding gene protein kinase, cAMP dependent regulatory, type II alpha
Tssr87156 9 108692202 to 108692212 10 + TSS region transcription start site region 87156
Tssr87157 9 108692290 to 108692312 22 + TSS region transcription start site region 87157
Gm24259 9 108738752 to 108738858 106 - snRNA gene predicted gene, 24259
Tssr87158 9 108739706 to 108739710 4 + TSS region transcription start site region 87158
Cpgi22352 9 108783512 to 108784434 922 CpG island CpG island 22352
Tssr87159 9 108783790 to 108783844 54 + TSS region transcription start site region 87159
Ip6k2 9 108783796 to 108806337 22541 + protein coding gene inositol hexaphosphate kinase 2
Tssr87160 9 108786088 to 108786092 4 + TSS region transcription start site region 87160
Gm23034 9 108795242 to 108795388 146 - snoRNA gene predicted gene, 23034
Tssr87161 9 108795971 to 108795994 23 + TSS region transcription start site region 87161
Cpgi22353 9 108807901 to 108809066 1165 CpG island CpG island 22353
Tssr87162 9 108808340 to 108808351 11 + TSS region transcription start site region 87162
Nckipsd 9 108808346 to 108818453 10107 + protein coding gene NCK interacting protein with SH3 domain
Tssr87163 9 108808356 to 108808441 85 + TSS region transcription start site region 87163
Gm35025 9 108823938 to 108825098 1160 - lncRNA gene predicted gene, 35025
Cpgi22354 9 108824175 to 108824670 495 CpG island CpG island 22354
Tssr91557 9 108824814 to 108824855 41 - TSS region transcription start site region 91557
Cpgi22355 9 108824852 to 108825449 597 CpG island CpG island 22355
Gm37714 9 108825349 to 108825690 341 + unclassified gene predicted gene, 37714
Cpgi22356 9 108825751 to 108828234 2483 CpG island CpG island 22356
Tssr87164 9 108826026 to 108826074 48 + TSS region transcription start site region 87164
Celsr3 9 108826320 to 108852969 26649 + protein coding gene cadherin, EGF LAG seven-pass G-type receptor 3