Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108446560-108588114

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klhdc8b 9 108447636 to 108461581 13945 - protein coding gene kelch domain containing 8B
Cpgi22338 9 108452235 to 108452835 600 CpG island CpG island 22338
Tssr91527 9 108452379 to 108452412 33 - TSS region transcription start site region 91527
Tssr87111 9 108452493 to 108452525 32 + TSS region transcription start site region 87111
Tssr91528 9 108452750 to 108452803 53 - TSS region transcription start site region 91528
Cpgi22339 9 108460402 to 108460997 595 CpG island CpG island 22339
Ccdc71 9 108460527 to 108465938 5411 + protein coding gene coiled-coil domain containing 71
Tssr87112 9 108460529 to 108460571 42 + TSS region transcription start site region 87112
Tssr91529 9 108460913 to 108460937 24 - TSS region transcription start site region 91529
Gm37475 9 108469346 to 108470360 1014 + unclassified gene predicted gene, 37475
Tssr87113 9 108479849 to 108479916 67 + TSS region transcription start site region 87113
Lamb2 9 108479857 to 108490530 10673 + protein coding gene laminin, beta 2
Tssr87114 9 108479923 to 108479935 12 + TSS region transcription start site region 87114
Tssr87115 9 108479942 to 108479951 9 + TSS region transcription start site region 87115
Tssr87116 9 108481708 to 108481733 25 + TSS region transcription start site region 87116
Cpgi22340 9 108490070 to 108491536 1466 CpG island CpG island 22340
Tssr91530 9 108490521 to 108490547 26 - TSS region transcription start site region 91530
Usp19 9 108490607 to 108502337 11730 + protein coding gene ubiquitin specific peptidase 19
Tssr87117 9 108490686 to 108490692 6 + TSS region transcription start site region 87117
Tssr87118 9 108490695 to 108490764 69 + TSS region transcription start site region 87118
Tssr87119 9 108490834 to 108490874 40 + TSS region transcription start site region 87119
D9Dcr111 9 108493947 to 108494044 97 DNA segment DNA segment, Chr 9, Derry C. Roopenian 111
Tssr87120 9 108497916 to 108497934 18 + TSS region transcription start site region 87120
Cpgi22341 9 108507635 to 108508310 675 CpG island CpG island 22341
Qars 9 108508005 to 108515941 7936 + protein coding gene glutaminyl-tRNA synthetase
Tssr87121 9 108508050 to 108508076 26 + TSS region transcription start site region 87121
Tssr87122 9 108508295 to 108508327 32 + TSS region transcription start site region 87122
Cpgi22342 9 108516560 to 108518114 1554 CpG island CpG island 22342
Tssr87123 9 108516955 to 108516968 13 + TSS region transcription start site region 87123
Tssr87124 9 108516976 to 108517006 30 + TSS region transcription start site region 87124
Tssr87125 9 108517070 to 108517117 47 + TSS region transcription start site region 87125
Qrich1 9 108517087 to 108560167 43080 + protein coding gene glutamine-rich 1
Tssr87126 9 108517127 to 108517141 14 + TSS region transcription start site region 87126
Tssr87127 9 108517159 to 108517170 11 + TSS region transcription start site region 87127
Tssr87128 9 108517516 to 108517527 11 + TSS region transcription start site region 87128
Tssr87129 9 108517566 to 108517620 54 + TSS region transcription start site region 87129
Tssr87130 9 108517684 to 108517706 22 + TSS region transcription start site region 87130
Tssr87131 9 108517712 to 108517724 12 + TSS region transcription start site region 87131
Tssr87132 9 108517745 to 108517756 11 + TSS region transcription start site region 87132
Tssr91531 9 108518204 to 108518229 25 - TSS region transcription start site region 91531
Tssr87133 9 108524655 to 108524659 4 + TSS region transcription start site region 87133
Gm38366 9 108530832 to 108532765 1933 + unclassified gene predicted gene, 38366
Tssr87134 9 108533585 to 108533609 24 + TSS region transcription start site region 87134
Tssr87135 9 108534192 to 108534246 54 + TSS region transcription start site region 87135
Gm37678 9 108544214 to 108545359 1145 + unclassified gene predicted gene, 37678
Tssr87136 9 108548426 to 108548430 4 + TSS region transcription start site region 87136
D630038D15Rik 9 108550612 to 108551474 862 unclassified gene RIKEN cDNA D630038D15 gene
Tssr87137 9 108559753 to 108559815 62 + TSS region transcription start site region 87137
Tssr87138 9 108559857 to 108559862 5 + TSS region transcription start site region 87138
Tssr87139 9 108560012 to 108560044 32 + TSS region transcription start site region 87139
Cpgi22343 9 108560149 to 108560911 762 CpG island CpG island 22343
Impdh2 9 108560291 to 108565577 5286 + protein coding gene inosine monophosphate dehydrogenase 2
Tssr87140 9 108560422 to 108560451 29 + TSS region transcription start site region 87140
Ndufaf3 9 108565865 to 108567342 1477 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 3
Cpgi22344 9 108566445 to 108568176 1731 CpG island CpG island 22344
Tssr91532 9 108566866 to 108566877 11 - TSS region transcription start site region 91532
Tssr91533 9 108566894 to 108566905 11 - TSS region transcription start site region 91533
Tssr91534 9 108566927 to 108566978 51 - TSS region transcription start site region 91534
Tssr91535 9 108567277 to 108567302 25 - TSS region transcription start site region 91535
Tssr91536 9 108567314 to 108567333 19 - TSS region transcription start site region 91536
Tssr91537 9 108567336 to 108567359 23 - TSS region transcription start site region 91537
Tssr91538 9 108567362 to 108567449 87 - TSS region transcription start site region 91538
Tssr87141 9 108567484 to 108567497 13 + TSS region transcription start site region 87141
Tssr87142 9 108567526 to 108567540 14 + TSS region transcription start site region 87142
4833445I07Rik 9 108567533 to 108569174 1641 + lincRNA gene RIKEN cDNA 4833445I07 gene
Tssr91539 9 108567580 to 108567595 15 - TSS region transcription start site region 91539
Tssr87143 9 108568018 to 108568059 41 + TSS region transcription start site region 87143
Gm24083 9 108568295 to 108568414 119 - miRNA gene predicted gene, 24083
Mir191 9 108568319 to 108568392 73 + miRNA gene microRNA 191
Cpgi22345 9 108568701 to 108568885 184 CpG island CpG island 22345
Mir425 9 108568777 to 108568861 84 + miRNA gene microRNA 425
Cpgi22346 9 108569744 to 108570986 1242 CpG island CpG island 22346
Tssr87144 9 108569885 to 108569943 58 + TSS region transcription start site region 87144
Dalrd3 9 108569886 to 108572774 2888 + protein coding gene DALR anticodon binding domain containing 3
Tssr87145 9 108569951 to 108569960 9 + TSS region transcription start site region 87145
Wdr6 9 108572313 to 108578670 6357 - protein coding gene WD repeat domain 6
Cpgi22347 9 108578190 to 108579297 1107 CpG island CpG island 22347
Tssr91540 9 108578594 to 108578656 62 - TSS region transcription start site region 91540
Tssr91541 9 108578657 to 108578675 18 - TSS region transcription start site region 91541
Tssr91542 9 108578677 to 108578691 14 - TSS region transcription start site region 91542
Tssr91543 9 108578701 to 108578721 20 - TSS region transcription start site region 91543
P4htm 9 108578862 to 108597667 18805 - protein coding gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
Gm38163 9 108584756 to 108585361 605 - sense intronic lncRNA gene predicted gene, 38163
Gm49209 9 108587052 to 108589545 2493 + pseudogene predicted gene, 49209