Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108366609-108496991

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp4 9 108347853 to 108392545 44692 + protein coding gene ubiquitin specific peptidase 4 (proto-oncogene)
Tssr87103 9 108374365 to 108374367 2 + TSS region transcription start site region 87103
Gm37963 9 108389082 to 108390205 1123 + sense intronic lncRNA gene predicted gene, 37963
Tssr3011 9 108392793 to 108392812 19 + TSS region transcription start site region 3011
1700102P08Rik 9 108392805 to 108410934 18129 + protein coding gene RIKEN cDNA 1700102P08 gene
Tssr87104 9 108392820 to 108392843 23 + TSS region transcription start site region 87104
Cpgi22336 9 108392858 to 108393189 331 CpG island CpG island 22336
Tssr87105 9 108392895 to 108392902 7 + TSS region transcription start site region 87105
Tssr87106 9 108392908 to 108392918 10 + TSS region transcription start site region 87106
Tssr87107 9 108393134 to 108393143 9 + TSS region transcription start site region 87107
Tssr87108 9 108397928 to 108397934 6 + TSS region transcription start site region 87108
Ccdc36 9 108403611 to 108428484 24873 - protein coding gene coiled-coil domain containing 36
D9Mit184 9 108413879 to 108414013 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 184
Splic3 9 108413879 to 108414013 134 QTL spleen iron content 3
Lvic6 9 108413879 to 108414013 134 QTL liver iron content 6
Splic1 9 108413879 to 108414013 134 QTL spleen iron content 1
Gm25456 9 108430044 to 108430152 108 - snoRNA gene predicted gene, 25456
Cpgi22337 9 108431609 to 108431991 382 CpG island CpG island 22337
Tssr91526 9 108431810 to 108431845 35 - TSS region transcription start site region 91526
Tssr87109 9 108436463 to 108436470 7 + TSS region transcription start site region 87109
Tssr87110 9 108436474 to 108436504 30 + TSS region transcription start site region 87110
BC048562 9 108436482 to 108446083 9601 + protein coding gene cDNA sequence BC048562
Klhdc8b 9 108447636 to 108461581 13945 - protein coding gene kelch domain containing 8B
Cpgi22338 9 108452235 to 108452835 600 CpG island CpG island 22338
Tssr91527 9 108452379 to 108452412 33 - TSS region transcription start site region 91527
Tssr87111 9 108452493 to 108452525 32 + TSS region transcription start site region 87111
Tssr91528 9 108452750 to 108452803 53 - TSS region transcription start site region 91528
Cpgi22339 9 108460402 to 108460997 595 CpG island CpG island 22339
Ccdc71 9 108460527 to 108465938 5411 + protein coding gene coiled-coil domain containing 71
Tssr87112 9 108460529 to 108460571 42 + TSS region transcription start site region 87112
Tssr91529 9 108460913 to 108460937 24 - TSS region transcription start site region 91529
Gm37475 9 108469346 to 108470360 1014 + unclassified gene predicted gene, 37475
Tssr87113 9 108479849 to 108479916 67 + TSS region transcription start site region 87113
Lamb2 9 108479857 to 108490530 10673 + protein coding gene laminin, beta 2
Tssr87114 9 108479923 to 108479935 12 + TSS region transcription start site region 87114
Tssr87115 9 108479942 to 108479951 9 + TSS region transcription start site region 87115
Tssr87116 9 108481708 to 108481733 25 + TSS region transcription start site region 87116
Cpgi22340 9 108490070 to 108491536 1466 CpG island CpG island 22340
Tssr91530 9 108490521 to 108490547 26 - TSS region transcription start site region 91530
Usp19 9 108490607 to 108502337 11730 + protein coding gene ubiquitin specific peptidase 19
Tssr87117 9 108490686 to 108490692 6 + TSS region transcription start site region 87117
Tssr87118 9 108490695 to 108490764 69 + TSS region transcription start site region 87118
Tssr87119 9 108490834 to 108490874 40 + TSS region transcription start site region 87119
D9Dcr111 9 108493947 to 108494044 97 DNA segment DNA segment, Chr 9, Derry C. Roopenian 111