Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108227278-108447299

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dag1 9 108204861 to 108263958 59097 - protein coding gene dystroglycan 1
Cpgi22331 9 108263137 to 108264440 1303 CpG island CpG island 22331
Tssr91511 9 108263706 to 108263819 113 - TSS region transcription start site region 91511
Tssr91512 9 108263887 to 108263965 78 - TSS region transcription start site region 91512
Tssr87070 9 108264068 to 108264086 18 + TSS region transcription start site region 87070
Tssr91513 9 108275071 to 108275082 11 - TSS region transcription start site region 91513
Tssr91514 9 108275087 to 108275134 47 - TSS region transcription start site region 91514
D9Dcr110 9 108282001 to 108282096 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 110
Cpgi22332 9 108290306 to 108290732 426 CpG island CpG island 22332
Tssr87071 9 108290433 to 108290497 64 + TSS region transcription start site region 87071
Nicn1 9 108290457 to 108296496 6039 + protein coding gene nicolin 1
Tssr87072 9 108296691 to 108296702 11 + TSS region transcription start site region 87072
Tssr87073 9 108296709 to 108296752 43 + TSS region transcription start site region 87073
Tssr87074 9 108296853 to 108296871 18 + TSS region transcription start site region 87074
Tssr87075 9 108296874 to 108296937 63 + TSS region transcription start site region 87075
Amt 9 108296922 to 108302302 5380 + protein coding gene aminomethyltransferase
Tcta 9 108302958 to 108306160 3202 - protein coding gene T cell leukemia translocation altered gene
Cpgi22333 9 108305649 to 108307202 1553 CpG island CpG island 22333
Tssr91515 9 108305941 to 108305958 17 - TSS region transcription start site region 91515
Tssr91516 9 108305963 to 108305997 34 - TSS region transcription start site region 91516
Tssr91517 9 108306157 to 108306161 4 - TSS region transcription start site region 91517
Rhoa 9 108306160 to 108337943 31783 + protein coding gene ras homolog family member A
Tssr87076 9 108306256 to 108306267 11 + TSS region transcription start site region 87076
Tssr87077 9 108306269 to 108306276 7 + TSS region transcription start site region 87077
Tssr87078 9 108306288 to 108306300 12 + TSS region transcription start site region 87078
Tssr87079 9 108306310 to 108306315 5 + TSS region transcription start site region 87079
Tssr87080 9 108306323 to 108306456 133 + TSS region transcription start site region 87080
Tssr87081 9 108306471 to 108306484 13 + TSS region transcription start site region 87081
Tssr87082 9 108306822 to 108306847 25 + TSS region transcription start site region 87082
Tssr87083 9 108306860 to 108306915 55 + TSS region transcription start site region 87083
Tssr87084 9 108320714 to 108320718 4 + TSS region transcription start site region 87084
Tssr91518 9 108326712 to 108326721 9 - TSS region transcription start site region 91518
Tssr87085 9 108327667 to 108327693 26 + TSS region transcription start site region 87085
Gm37568 9 108331246 to 108331609 363 + pseudogene predicted gene, 37568
Tssr87086 9 108336788 to 108336831 43 + TSS region transcription start site region 87086
Gm37401 9 108337089 to 108338273 1184 - antisense lncRNA gene predicted gene, 37401
Tssr87087 9 108337278 to 108337299 21 + TSS region transcription start site region 87087
Tssr87088 9 108337451 to 108337481 30 + TSS region transcription start site region 87088
Tssr87089 9 108337535 to 108337541 6 + TSS region transcription start site region 87089
Tssr87090 9 108339048 to 108339070 22 + TSS region transcription start site region 87090
Tssr87091 9 108339073 to 108339098 25 + TSS region transcription start site region 87091
Gpx1 9 108339080 to 108340342 1262 + protein coding gene glutathione peroxidase 1
Cpgi22334 9 108339094 to 108340175 1081 CpG island CpG island 22334
Tssr87092 9 108339221 to 108339232 11 + TSS region transcription start site region 87092
Tssr87093 9 108339243 to 108339247 4 + TSS region transcription start site region 87093
Tssr87094 9 108339267 to 108339284 17 + TSS region transcription start site region 87094
Tssr87095 9 108339288 to 108339299 11 + TSS region transcription start site region 87095
Tssr87096 9 108339308 to 108339310 2 + TSS region transcription start site region 87096
Tssr3010 9 108339742 to 108339750 8 + TSS region transcription start site region 3010
Tssr87097 9 108339776 to 108339920 144 + TSS region transcription start site region 87097
Tssr91519 9 108339876 to 108339893 17 - TSS region transcription start site region 91519
Tssr91520 9 108339921 to 108339984 63 - TSS region transcription start site region 91520
Tssr87098 9 108339928 to 108339987 59 + TSS region transcription start site region 87098
Tssr91521 9 108340068 to 108340080 12 - TSS region transcription start site region 91521
Tssr91522 9 108340126 to 108340156 30 - TSS region transcription start site region 91522
Tssr87099 9 108340298 to 108340316 18 + TSS region transcription start site region 87099
Tssr91523 9 108340319 to 108340341 22 - TSS region transcription start site region 91523
Cpgi22335 9 108347355 to 108348350 995 CpG island CpG island 22335
Tssr91524 9 108347721 to 108347745 24 - TSS region transcription start site region 91524
Tssr87100 9 108347827 to 108347926 99 + TSS region transcription start site region 87100
Usp4 9 108347853 to 108392545 44692 + protein coding gene ubiquitin specific peptidase 4 (proto-oncogene)
Tssr87101 9 108347932 to 108347947 15 + TSS region transcription start site region 87101
Tssr87102 9 108347958 to 108347969 11 + TSS region transcription start site region 87102
Rps2-ps11 9 108358202 to 108359069 867 - pseudogene ribosomal protein S2, pseudogene 11
Tssr91525 9 108359092 to 108359099 7 - TSS region transcription start site region 91525
Tssr87103 9 108374365 to 108374367 2 + TSS region transcription start site region 87103
Gm37963 9 108389082 to 108390205 1123 + sense intronic lncRNA gene predicted gene, 37963
Tssr3011 9 108392793 to 108392812 19 + TSS region transcription start site region 3011
1700102P08Rik 9 108392805 to 108410934 18129 + protein coding gene RIKEN cDNA 1700102P08 gene
Tssr87104 9 108392820 to 108392843 23 + TSS region transcription start site region 87104
Cpgi22336 9 108392858 to 108393189 331 CpG island CpG island 22336
Tssr87105 9 108392895 to 108392902 7 + TSS region transcription start site region 87105
Tssr87106 9 108392908 to 108392918 10 + TSS region transcription start site region 87106
Tssr87107 9 108393134 to 108393143 9 + TSS region transcription start site region 87107
Tssr87108 9 108397928 to 108397934 6 + TSS region transcription start site region 87108
Ccdc36 9 108403611 to 108428484 24873 - protein coding gene coiled-coil domain containing 36
Lvic6 9 108413879 to 108414013 134 QTL liver iron content 6
Splic3 9 108413879 to 108414013 134 QTL spleen iron content 3
Splic1 9 108413879 to 108414013 134 QTL spleen iron content 1
D9Mit184 9 108413879 to 108414013 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 184
Gm25456 9 108430044 to 108430152 108 - snoRNA gene predicted gene, 25456
Cpgi22337 9 108431609 to 108431991 382 CpG island CpG island 22337
Tssr91526 9 108431810 to 108431845 35 - TSS region transcription start site region 91526
Tssr87109 9 108436463 to 108436470 7 + TSS region transcription start site region 87109
Tssr87110 9 108436474 to 108436504 30 + TSS region transcription start site region 87110
BC048562 9 108436482 to 108446083 9601 + protein coding gene cDNA sequence BC048562