Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108068998-108309727

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf123 9 108051672 to 108080309 28637 - protein coding gene ring finger protein 123
Tssr91484 9 108072062 to 108072066 4 - TSS region transcription start site region 91484
D9Dcr106 9 108078300 to 108078401 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 106
Cpgi22320 9 108078764 to 108079722 958 CpG island CpG island 22320
Tssr91485 9 108079255 to 108079273 18 - TSS region transcription start site region 91485
Tssr91486 9 108079279 to 108079341 62 - TSS region transcription start site region 91486
Tssr91487 9 108079699 to 108079710 11 - TSS region transcription start site region 91487
Tssr91488 9 108079714 to 108079765 51 - TSS region transcription start site region 91488
Tssr91489 9 108080274 to 108080306 32 - TSS region transcription start site region 91489
Tssr87062 9 108080423 to 108080430 7 + TSS region transcription start site region 87062
Mst1 9 108080436 to 108085003 4567 + protein coding gene macrophage stimulating 1 (hepatocyte growth factor-like)
Tssr87063 9 108080446 to 108080462 16 + TSS region transcription start site region 87063
Tssr87064 9 108080467 to 108080478 11 + TSS region transcription start site region 87064
Mir7088 9 108081498 to 108081583 85 + miRNA gene microRNA 7088
Cpgi22321 9 108082017 to 108083097 1080 CpG island CpG island 22321
Tssr91490 9 108083330 to 108083370 40 - TSS region transcription start site region 91490
Apeh 9 108085414 to 108094554 9140 - protein coding gene acylpeptide hydrolase
Cpgi22322 9 108094080 to 108095248 1168 CpG island CpG island 22322
Tssr91491 9 108094459 to 108094487 28 - TSS region transcription start site region 91491
Tssr91492 9 108094527 to 108094542 15 - TSS region transcription start site region 91492
Tssr87065 9 108094657 to 108094696 39 + TSS region transcription start site region 87065
Gm46132 9 108094933 to 108096273 1340 + lncRNA gene predicted gene, 46132
Tssr87066 9 108095192 to 108095213 21 + TSS region transcription start site region 87066
Tssr87067 9 108095237 to 108095251 14 + TSS region transcription start site region 87067
Bsn 9 108096022 to 108190384 94362 - protein coding gene bassoon
Tssr91493 9 108101930 to 108101934 4 - TSS region transcription start site region 91493
Gm47303 9 108103129 to 108103246 117 - miRNA gene predicted gene, 47303
Tssr91494 9 108104861 to 108104872 11 - TSS region transcription start site region 91494
Tssr91495 9 108104874 to 108104902 28 - TSS region transcription start site region 91495
F630040L22Rik 9 108104964 to 108118342 13378 unclassified gene RIKEN cDNA F630040L22 gene
Cpgi22323 9 108105224 to 108105686 462 CpG island CpG island 22323
Cpgi22324 9 108106103 to 108106819 716 CpG island CpG island 22324
Cpgi22325 9 108110452 to 108111491 1039 CpG island CpG island 22325
Tssr91496 9 108110776 to 108110790 14 - TSS region transcription start site region 91496
Tssr91497 9 108110816 to 108110868 52 - TSS region transcription start site region 91497
Tssr87068 9 108110970 to 108110989 19 + TSS region transcription start site region 87068
Tssr91498 9 108111279 to 108111293 14 - TSS region transcription start site region 91498
Cpgi22326 9 108114857 to 108115710 853 CpG island CpG island 22326
Tssr91499 9 108126542 to 108126559 17 - TSS region transcription start site region 91499
4930447F24Rik 9 108133718 to 108138567 4849 + lncRNA gene RIKEN cDNA 4930447F24 gene
Tssr91500 9 108135396 to 108135409 13 - TSS region transcription start site region 91500
Cpgi22327 9 108137627 to 108137847 220 CpG island CpG island 22327
Tssr91501 9 108139365 to 108139377 12 - TSS region transcription start site region 91501
Tssr91502 9 108139452 to 108139455 3 - TSS region transcription start site region 91502
Tssr87069 9 108145977 to 108145996 19 + TSS region transcription start site region 87069
D9Dcr107 9 108146410 to 108146504 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 107
D9Dcr108 9 108156038 to 108156145 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 108
Cpgi22328 9 108160245 to 108160412 167 CpG island CpG island 22328
Gm37201 9 108160279 to 108160801 522 + pseudogene predicted gene, 37201
Tssr91503 9 108161484 to 108161485 1 - TSS region transcription start site region 91503
Cpgi22329 9 108183737 to 108184005 268 CpG island CpG island 22329
Gm37247 9 108188998 to 108189727 729 - unclassified gene predicted gene, 37247
Cpgi22330 9 108189564 to 108190829 1265 CpG island CpG island 22330
Tssr91504 9 108190352 to 108190420 68 - TSS region transcription start site region 91504
Tssr91505 9 108190421 to 108190430 9 - TSS region transcription start site region 91505
Tssr91506 9 108190466 to 108190483 17 - TSS region transcription start site region 91506
Gm37230 9 108190531 to 108191348 817 - unclassified gene predicted gene, 37230
Dag1 9 108204861 to 108263958 59097 - protein coding gene dystroglycan 1
Tssr91507 9 108208464 to 108208478 14 - TSS region transcription start site region 91507
Tssr91508 9 108208789 to 108208803 14 - TSS region transcription start site region 91508
Tssr91509 9 108209087 to 108209103 16 - TSS region transcription start site region 91509
Tssr91510 9 108209509 to 108209532 23 - TSS region transcription start site region 91510
D9Mit359 9 108223644 to 108223764 120 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 359
Cpgi22331 9 108263137 to 108264440 1303 CpG island CpG island 22331
Tssr91511 9 108263706 to 108263819 113 - TSS region transcription start site region 91511
Tssr91512 9 108263887 to 108263965 78 - TSS region transcription start site region 91512
Tssr87070 9 108264068 to 108264086 18 + TSS region transcription start site region 87070
Tssr91513 9 108275071 to 108275082 11 - TSS region transcription start site region 91513
Tssr91514 9 108275087 to 108275134 47 - TSS region transcription start site region 91514
D9Dcr110 9 108282001 to 108282096 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 110
Cpgi22332 9 108290306 to 108290732 426 CpG island CpG island 22332
Tssr87071 9 108290433 to 108290497 64 + TSS region transcription start site region 87071
Nicn1 9 108290457 to 108296496 6039 + protein coding gene nicolin 1
Tssr87072 9 108296691 to 108296702 11 + TSS region transcription start site region 87072
Tssr87073 9 108296709 to 108296752 43 + TSS region transcription start site region 87073
Tssr87074 9 108296853 to 108296871 18 + TSS region transcription start site region 87074
Tssr87075 9 108296874 to 108296937 63 + TSS region transcription start site region 87075
Amt 9 108296922 to 108302302 5380 + protein coding gene aminomethyltransferase
Tcta 9 108302958 to 108306160 3202 - protein coding gene T cell leukemia translocation altered gene
Cpgi22333 9 108305649 to 108307202 1553 CpG island CpG island 22333
Tssr91515 9 108305941 to 108305958 17 - TSS region transcription start site region 91515
Tssr91516 9 108305963 to 108305997 34 - TSS region transcription start site region 91516
Tssr91517 9 108306157 to 108306161 4 - TSS region transcription start site region 91517
Rhoa 9 108306160 to 108337943 31783 + protein coding gene ras homolog family member A
Tssr87076 9 108306256 to 108306267 11 + TSS region transcription start site region 87076
Tssr87077 9 108306269 to 108306276 7 + TSS region transcription start site region 87077
Tssr87078 9 108306288 to 108306300 12 + TSS region transcription start site region 87078
Tssr87079 9 108306310 to 108306315 5 + TSS region transcription start site region 87079
Tssr87080 9 108306323 to 108306456 133 + TSS region transcription start site region 87080
Tssr87081 9 108306471 to 108306484 13 + TSS region transcription start site region 87081
Tssr87082 9 108306822 to 108306847 25 + TSS region transcription start site region 87082
Tssr87083 9 108306860 to 108306915 55 + TSS region transcription start site region 87083