Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 9:107979699-108179710

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89 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Uba7 9 107975567 to 107984056 8489 + protein coding gene ubiquitin-like modifier activating enzyme 7
Tssr87046 9 107982969 to 107982989 20 + TSS region transcription start site region 87046
Tssr87047 9 107982991 to 107983037 46 + TSS region transcription start site region 87047
Tssr87048 9 107983039 to 107983066 27 + TSS region transcription start site region 87048
Gm20661 9 107983058 to 107995007 11949 + protein coding gene predicted gene 20661
Inka1 9 107984223 to 107985879 1656 - protein coding gene inka box actin regulator 1
Cpgi22316 9 107985212 to 107986566 1354 CpG island CpG island 22316
Tssr91479 9 107985863 to 107985893 30 - TSS region transcription start site region 91479
Tssr91480 9 107985907 to 107985924 17 - TSS region transcription start site region 91480
Gm24944 9 107987369 to 107987496 127 + snoRNA gene predicted gene, 24944
4921523L03Rik 9 107991684 to 107995656 3972 - lncRNA gene RIKEN cDNA 4921523L03 gene
Tssr87049 9 107992451 to 107992462 11 + TSS region transcription start site region 87049
Tssr87050 9 107992463 to 107992522 59 + TSS region transcription start site region 87050
Cdhr4 9 107992497 to 107999684 7187 + protein coding gene cadherin-related family member 4
Cpgi22317 9 107995645 to 107995925 280 CpG island CpG island 22317
Tssr87051 9 107995728 to 107995738 10 + TSS region transcription start site region 87051
Tssr87052 9 107995739 to 107995790 51 + TSS region transcription start site region 87052
Gm20662 9 107996349 to 108045270 48921 + protein coding gene predicted gene 20662
Tssr87053 9 107997987 to 107997999 12 + TSS region transcription start site region 87053
Tssr87054 9 107998006 to 107998026 20 + TSS region transcription start site region 87054
4930535L15Rik 9 107998116 to 108002404 4288 - lncRNA gene RIKEN cDNA 4930535L15 gene
D9Dcr104 9 108000878 to 108000980 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 104
Cpgi22318 9 108002024 to 108003368 1344 CpG island CpG island 22318
Tssr87055 9 108002058 to 108002065 7 + TSS region transcription start site region 87055
Tssr91481 9 108002384 to 108002437 53 - TSS region transcription start site region 91481
Tssr87056 9 108002615 to 108002680 65 + TSS region transcription start site region 87056
Ip6k1 9 108002648 to 108048782 46134 + protein coding gene inositol hexaphosphate kinase 1
Gm38134 9 108010976 to 108016608 5632 - lncRNA gene predicted gene, 38134
Tssr87057 9 108023926 to 108023952 26 + TSS region transcription start site region 87057
Tssr87058 9 108045389 to 108045402 13 + TSS region transcription start site region 87058
Cpgi22319 9 108048595 to 108049784 1189 CpG island CpG island 22319
Gmppb 9 108049239 to 108051923 2684 + protein coding gene GDP-mannose pyrophosphorylase B
Tssr87059 9 108049254 to 108049339 85 + TSS region transcription start site region 87059
Tssr87060 9 108049859 to 108049894 35 + TSS region transcription start site region 87060
Rnf123 9 108051672 to 108080352 28680 - protein coding gene ring finger protein 123
Gm20529 9 108051675 to 108058592 6917 + lncRNA gene predicted gene 20529
Tssr87061 9 108053154 to 108053165 11 + TSS region transcription start site region 87061
Amigo3 9 108053159 to 108055701 2542 + protein coding gene adhesion molecule with Ig like domain 3
Tssr91482 9 108057293 to 108057308 15 - TSS region transcription start site region 91482
D9Dcr105 9 108059509 to 108059604 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 105
Tssr91483 9 108061988 to 108062007 19 - TSS region transcription start site region 91483
Tssr91484 9 108072062 to 108072066 4 - TSS region transcription start site region 91484
D9Dcr106 9 108078300 to 108078401 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 106
Cpgi22320 9 108078764 to 108079722 958 CpG island CpG island 22320
Tssr91485 9 108079255 to 108079273 18 - TSS region transcription start site region 91485
Tssr91486 9 108079279 to 108079341 62 - TSS region transcription start site region 91486
Tssr91487 9 108079699 to 108079710 11 - TSS region transcription start site region 91487
Tssr91488 9 108079714 to 108079765 51 - TSS region transcription start site region 91488
Tssr91489 9 108080274 to 108080306 32 - TSS region transcription start site region 91489
Tssr87062 9 108080423 to 108080430 7 + TSS region transcription start site region 87062
Mst1 9 108080436 to 108085003 4567 + protein coding gene macrophage stimulating 1 (hepatocyte growth factor-like)
Tssr87063 9 108080446 to 108080462 16 + TSS region transcription start site region 87063
Tssr87064 9 108080467 to 108080478 11 + TSS region transcription start site region 87064
Mir7088 9 108081498 to 108081583 85 + miRNA gene microRNA 7088
Cpgi22321 9 108082017 to 108083097 1080 CpG island CpG island 22321
Tssr91490 9 108083330 to 108083370 40 - TSS region transcription start site region 91490
Apeh 9 108085413 to 108094490 9077 - protein coding gene acylpeptide hydrolase
Cpgi22322 9 108094080 to 108095248 1168 CpG island CpG island 22322
Tssr91491 9 108094459 to 108094487 28 - TSS region transcription start site region 91491
Tssr91492 9 108094527 to 108094542 15 - TSS region transcription start site region 91492
Tssr87065 9 108094657 to 108094696 39 + TSS region transcription start site region 87065
Tssr87066 9 108095192 to 108095213 21 + TSS region transcription start site region 87066
Tssr87067 9 108095237 to 108095251 14 + TSS region transcription start site region 87067
Bsn 9 108096022 to 108190384 94362 - protein coding gene bassoon
Tssr91493 9 108101930 to 108101934 4 - TSS region transcription start site region 91493
Gm47303 9 108103129 to 108103246 117 - miRNA gene predicted gene, 47303
Tssr91494 9 108104861 to 108104872 11 - TSS region transcription start site region 91494
Tssr91495 9 108104874 to 108104902 28 - TSS region transcription start site region 91495
F630040L22Rik 9 108104964 to 108118342 13378 lncRNA gene RIKEN cDNA F630040L22 gene
Cpgi22323 9 108105224 to 108105686 462 CpG island CpG island 22323
Cpgi22324 9 108106103 to 108106819 716 CpG island CpG island 22324
Cpgi22325 9 108110452 to 108111491 1039 CpG island CpG island 22325
Tssr91496 9 108110776 to 108110790 14 - TSS region transcription start site region 91496
Tssr91497 9 108110816 to 108110868 52 - TSS region transcription start site region 91497
Tssr87068 9 108110970 to 108110989 19 + TSS region transcription start site region 87068
Tssr91498 9 108111279 to 108111293 14 - TSS region transcription start site region 91498
Cpgi22326 9 108114857 to 108115710 853 CpG island CpG island 22326
Tssr91499 9 108126542 to 108126559 17 - TSS region transcription start site region 91499
4930447F24Rik 9 108133718 to 108138567 4849 + lncRNA gene RIKEN cDNA 4930447F24 gene
Tssr91500 9 108135396 to 108135409 13 - TSS region transcription start site region 91500
Cpgi22327 9 108137627 to 108137847 220 CpG island CpG island 22327
Tssr91501 9 108139365 to 108139377 12 - TSS region transcription start site region 91501
Tssr91502 9 108139452 to 108139455 3 - TSS region transcription start site region 91502
Tssr87069 9 108145977 to 108145996 19 + TSS region transcription start site region 87069
D9Dcr107 9 108146410 to 108146504 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 107
D9Dcr108 9 108156038 to 108156145 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 108
Cpgi22328 9 108160245 to 108160412 167 CpG island CpG island 22328
Gm37201 9 108160279 to 108160801 522 + pseudogene predicted gene, 37201
Tssr91503 9 108161484 to 108161485 1 - TSS region transcription start site region 91503