Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107954922-109985003

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577 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Traip 9 107950963 to 107972268 21305 + protein coding gene TRAF-interacting protein
Tssr87037 9 107961504 to 107961507 3 + TSS region transcription start site region 87037
Tssr87038 9 107972100 to 107972114 14 + TSS region transcription start site region 87038
Tssr87039 9 107975496 to 107975510 14 + TSS region transcription start site region 87039
Tssr87040 9 107975529 to 107975601 72 + TSS region transcription start site region 87040
Uba7 9 107975567 to 107984056 8489 + protein coding gene ubiquitin-like modifier activating enzyme 7
Tssr87041 9 107975610 to 107975621 11 + TSS region transcription start site region 87041
Tssr87042 9 107975622 to 107975631 9 + TSS region transcription start site region 87042
Tssr87043 9 107975643 to 107975648 5 + TSS region transcription start site region 87043
Tssr87044 9 107975652 to 107975660 8 + TSS region transcription start site region 87044
Tssr87045 9 107976903 to 107976914 11 + TSS region transcription start site region 87045
Tssr87046 9 107982969 to 107982989 20 + TSS region transcription start site region 87046
Tssr87047 9 107982991 to 107983037 46 + TSS region transcription start site region 87047
Tssr87048 9 107983039 to 107983066 27 + TSS region transcription start site region 87048
Gm20661 9 107983058 to 107995007 11949 + protein coding gene predicted gene 20661
Inka1 9 107984223 to 107985879 1656 - protein coding gene inka box actin regulator 1
Cpgi22316 9 107985212 to 107986566 1354 CpG island CpG island 22316
Tssr91479 9 107985863 to 107985893 30 - TSS region transcription start site region 91479
Tssr91480 9 107985907 to 107985924 17 - TSS region transcription start site region 91480
Gm24944 9 107987369 to 107987496 127 + snoRNA gene predicted gene, 24944
4921523L03Rik 9 107991684 to 107995656 3972 - antisense lncRNA gene RIKEN cDNA 4921523L03 gene
Tssr87049 9 107992451 to 107992462 11 + TSS region transcription start site region 87049
Tssr87050 9 107992463 to 107992522 59 + TSS region transcription start site region 87050
Cdhr4 9 107992497 to 107999684 7187 + protein coding gene cadherin-related family member 4
Cpgi22317 9 107995645 to 107995925 280 CpG island CpG island 22317
Tssr87051 9 107995728 to 107995738 10 + TSS region transcription start site region 87051
Tssr87052 9 107995739 to 107995790 51 + TSS region transcription start site region 87052
Gm20662 9 107996349 to 108045270 48921 + protein coding gene predicted gene 20662
Tssr87053 9 107997987 to 107997999 12 + TSS region transcription start site region 87053
Tssr87054 9 107998006 to 107998026 20 + TSS region transcription start site region 87054
4930535L15Rik 9 107998116 to 108002404 4288 - antisense lncRNA gene RIKEN cDNA 4930535L15 gene
D9Dcr104 9 108000878 to 108000980 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 104
Cpgi22318 9 108002024 to 108003368 1344 CpG island CpG island 22318
Tssr87055 9 108002058 to 108002065 7 + TSS region transcription start site region 87055
Tssr91481 9 108002384 to 108002437 53 - TSS region transcription start site region 91481
Tssr87056 9 108002615 to 108002680 65 + TSS region transcription start site region 87056
Ip6k1 9 108002648 to 108048782 46134 + protein coding gene inositol hexaphosphate kinase 1
Gm38134 9 108010976 to 108016608 5632 - antisense lncRNA gene predicted gene, 38134
Tssr87057 9 108023926 to 108023952 26 + TSS region transcription start site region 87057
Tssr87058 9 108045389 to 108045402 13 + TSS region transcription start site region 87058
Cpgi22319 9 108048595 to 108049784 1189 CpG island CpG island 22319
Tssr87059 9 108049254 to 108049339 85 + TSS region transcription start site region 87059
Gmppb 9 108049267 to 108051936 2669 + protein coding gene GDP-mannose pyrophosphorylase B
Tssr87060 9 108049859 to 108049894 35 + TSS region transcription start site region 87060
Rnf123 9 108051672 to 108080309 28637 - protein coding gene ring finger protein 123
Gm20529 9 108051675 to 108058592 6917 + unclassified non-coding RNA gene predicted gene 20529
Tssr87061 9 108053154 to 108053165 11 + TSS region transcription start site region 87061
Amigo3 9 108053159 to 108055701 2542 + protein coding gene adhesion molecule with Ig like domain 3
Tssr91482 9 108057293 to 108057308 15 - TSS region transcription start site region 91482
D9Dcr105 9 108059509 to 108059604 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 105
Tssr91483 9 108061988 to 108062007 19 - TSS region transcription start site region 91483
Tssr91484 9 108072062 to 108072066 4 - TSS region transcription start site region 91484
D9Dcr106 9 108078300 to 108078401 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 106
Cpgi22320 9 108078764 to 108079722 958 CpG island CpG island 22320
Tssr91485 9 108079255 to 108079273 18 - TSS region transcription start site region 91485
Tssr91486 9 108079279 to 108079341 62 - TSS region transcription start site region 91486
Tssr91487 9 108079699 to 108079710 11 - TSS region transcription start site region 91487
Tssr91488 9 108079714 to 108079765 51 - TSS region transcription start site region 91488
Tssr91489 9 108080274 to 108080306 32 - TSS region transcription start site region 91489
Tssr87062 9 108080423 to 108080430 7 + TSS region transcription start site region 87062
Mst1 9 108080436 to 108085003 4567 + protein coding gene macrophage stimulating 1 (hepatocyte growth factor-like)
Tssr87063 9 108080446 to 108080462 16 + TSS region transcription start site region 87063
Tssr87064 9 108080467 to 108080478 11 + TSS region transcription start site region 87064
Mir7088 9 108081498 to 108081583 85 + miRNA gene microRNA 7088
Cpgi22321 9 108082017 to 108083097 1080 CpG island CpG island 22321
Tssr91490 9 108083330 to 108083370 40 - TSS region transcription start site region 91490
Apeh 9 108085414 to 108094554 9140 - protein coding gene acylpeptide hydrolase
Cpgi22322 9 108094080 to 108095248 1168 CpG island CpG island 22322
Tssr91491 9 108094459 to 108094487 28 - TSS region transcription start site region 91491
Tssr91492 9 108094527 to 108094542 15 - TSS region transcription start site region 91492
Tssr87065 9 108094657 to 108094696 39 + TSS region transcription start site region 87065
Gm46132 9 108094933 to 108096273 1340 + lncRNA gene predicted gene, 46132
Tssr87066 9 108095192 to 108095213 21 + TSS region transcription start site region 87066
Tssr87067 9 108095237 to 108095251 14 + TSS region transcription start site region 87067
Bsn 9 108096022 to 108190384 94362 - protein coding gene bassoon
Tssr91493 9 108101930 to 108101934 4 - TSS region transcription start site region 91493
Gm47303 9 108103129 to 108103246 117 - miRNA gene predicted gene, 47303
Tssr91494 9 108104861 to 108104872 11 - TSS region transcription start site region 91494
Tssr91495 9 108104874 to 108104902 28 - TSS region transcription start site region 91495
F630040L22Rik 9 108104964 to 108118342 13378 unclassified gene RIKEN cDNA F630040L22 gene
Cpgi22323 9 108105224 to 108105686 462 CpG island CpG island 22323
Cpgi22324 9 108106103 to 108106819 716 CpG island CpG island 22324
Cpgi22325 9 108110452 to 108111491 1039 CpG island CpG island 22325
Tssr91496 9 108110776 to 108110790 14 - TSS region transcription start site region 91496
Tssr91497 9 108110816 to 108110868 52 - TSS region transcription start site region 91497
Tssr87068 9 108110970 to 108110989 19 + TSS region transcription start site region 87068
Tssr91498 9 108111279 to 108111293 14 - TSS region transcription start site region 91498
Cpgi22326 9 108114857 to 108115710 853 CpG island CpG island 22326
Tssr91499 9 108126542 to 108126559 17 - TSS region transcription start site region 91499
4930447F24Rik 9 108133718 to 108138567 4849 + lncRNA gene RIKEN cDNA 4930447F24 gene
Tssr91500 9 108135396 to 108135409 13 - TSS region transcription start site region 91500
Cpgi22327 9 108137627 to 108137847 220 CpG island CpG island 22327
Tssr91501 9 108139365 to 108139377 12 - TSS region transcription start site region 91501
Tssr91502 9 108139452 to 108139455 3 - TSS region transcription start site region 91502
Tssr87069 9 108145977 to 108145996 19 + TSS region transcription start site region 87069
D9Dcr107 9 108146410 to 108146504 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 107
D9Dcr108 9 108156038 to 108156145 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 108
Cpgi22328 9 108160245 to 108160412 167 CpG island CpG island 22328
Gm37201 9 108160279 to 108160801 522 + pseudogene predicted gene, 37201
Tssr91503 9 108161484 to 108161485 1 - TSS region transcription start site region 91503
Cpgi22329 9 108183737 to 108184005 268 CpG island CpG island 22329
Gm37247 9 108188998 to 108189727 729 - unclassified gene predicted gene, 37247
Cpgi22330 9 108189564 to 108190829 1265 CpG island CpG island 22330
Tssr91504 9 108190352 to 108190420 68 - TSS region transcription start site region 91504
Tssr91505 9 108190421 to 108190430 9 - TSS region transcription start site region 91505
Tssr91506 9 108190466 to 108190483 17 - TSS region transcription start site region 91506
Gm37230 9 108190531 to 108191348 817 - unclassified gene predicted gene, 37230
Dag1 9 108204861 to 108263958 59097 - protein coding gene dystroglycan 1
Tssr91507 9 108208464 to 108208478 14 - TSS region transcription start site region 91507
Tssr91508 9 108208789 to 108208803 14 - TSS region transcription start site region 91508
Tssr91509 9 108209087 to 108209103 16 - TSS region transcription start site region 91509
Tssr91510 9 108209509 to 108209532 23 - TSS region transcription start site region 91510
D9Mit359 9 108223644 to 108223764 120 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 359
Cpgi22331 9 108263137 to 108264440 1303 CpG island CpG island 22331
Tssr91511 9 108263706 to 108263819 113 - TSS region transcription start site region 91511
Tssr91512 9 108263887 to 108263965 78 - TSS region transcription start site region 91512
Tssr87070 9 108264068 to 108264086 18 + TSS region transcription start site region 87070
Tssr91513 9 108275071 to 108275082 11 - TSS region transcription start site region 91513
Tssr91514 9 108275087 to 108275134 47 - TSS region transcription start site region 91514
D9Dcr110 9 108282001 to 108282096 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 110
Cpgi22332 9 108290306 to 108290732 426 CpG island CpG island 22332
Tssr87071 9 108290433 to 108290497 64 + TSS region transcription start site region 87071
Nicn1 9 108290457 to 108296496 6039 + protein coding gene nicolin 1
Tssr87072 9 108296691 to 108296702 11 + TSS region transcription start site region 87072
Tssr87073 9 108296709 to 108296752 43 + TSS region transcription start site region 87073
Tssr87074 9 108296853 to 108296871 18 + TSS region transcription start site region 87074
Tssr87075 9 108296874 to 108296937 63 + TSS region transcription start site region 87075
Amt 9 108296922 to 108302302 5380 + protein coding gene aminomethyltransferase
Tcta 9 108302958 to 108306160 3202 - protein coding gene T cell leukemia translocation altered gene
Cpgi22333 9 108305649 to 108307202 1553 CpG island CpG island 22333
Tssr91515 9 108305941 to 108305958 17 - TSS region transcription start site region 91515
Tssr91516 9 108305963 to 108305997 34 - TSS region transcription start site region 91516
Tssr91517 9 108306157 to 108306161 4 - TSS region transcription start site region 91517
Rhoa 9 108306160 to 108337943 31783 + protein coding gene ras homolog family member A
Tssr87076 9 108306256 to 108306267 11 + TSS region transcription start site region 87076
Tssr87077 9 108306269 to 108306276 7 + TSS region transcription start site region 87077
Tssr87078 9 108306288 to 108306300 12 + TSS region transcription start site region 87078
Tssr87079 9 108306310 to 108306315 5 + TSS region transcription start site region 87079
Tssr87080 9 108306323 to 108306456 133 + TSS region transcription start site region 87080
Tssr87081 9 108306471 to 108306484 13 + TSS region transcription start site region 87081
Tssr87082 9 108306822 to 108306847 25 + TSS region transcription start site region 87082
Tssr87083 9 108306860 to 108306915 55 + TSS region transcription start site region 87083
Tssr87084 9 108320714 to 108320718 4 + TSS region transcription start site region 87084
Tssr91518 9 108326712 to 108326721 9 - TSS region transcription start site region 91518
Tssr87085 9 108327667 to 108327693 26 + TSS region transcription start site region 87085
Gm37568 9 108331246 to 108331609 363 + pseudogene predicted gene, 37568
Tssr87086 9 108336788 to 108336831 43 + TSS region transcription start site region 87086
Gm37401 9 108337089 to 108338273 1184 - antisense lncRNA gene predicted gene, 37401
Tssr87087 9 108337278 to 108337299 21 + TSS region transcription start site region 87087
Tssr87088 9 108337451 to 108337481 30 + TSS region transcription start site region 87088
Tssr87089 9 108337535 to 108337541 6 + TSS region transcription start site region 87089
Tssr87090 9 108339048 to 108339070 22 + TSS region transcription start site region 87090
Tssr87091 9 108339073 to 108339098 25 + TSS region transcription start site region 87091
Gpx1 9 108339080 to 108340342 1262 + protein coding gene glutathione peroxidase 1
Cpgi22334 9 108339094 to 108340175 1081 CpG island CpG island 22334
Tssr87092 9 108339221 to 108339232 11 + TSS region transcription start site region 87092
Tssr87093 9 108339243 to 108339247 4 + TSS region transcription start site region 87093
Tssr87094 9 108339267 to 108339284 17 + TSS region transcription start site region 87094
Tssr87095 9 108339288 to 108339299 11 + TSS region transcription start site region 87095
Tssr87096 9 108339308 to 108339310 2 + TSS region transcription start site region 87096
Tssr3010 9 108339742 to 108339750 8 + TSS region transcription start site region 3010
Tssr87097 9 108339776 to 108339920 144 + TSS region transcription start site region 87097
Tssr91519 9 108339876 to 108339893 17 - TSS region transcription start site region 91519
Tssr91520 9 108339921 to 108339984 63 - TSS region transcription start site region 91520
Tssr87098 9 108339928 to 108339987 59 + TSS region transcription start site region 87098
Tssr91521 9 108340068 to 108340080 12 - TSS region transcription start site region 91521
Tssr91522 9 108340126 to 108340156 30 - TSS region transcription start site region 91522
Tssr87099 9 108340298 to 108340316 18 + TSS region transcription start site region 87099
Tssr91523 9 108340319 to 108340341 22 - TSS region transcription start site region 91523
Cpgi22335 9 108347355 to 108348350 995 CpG island CpG island 22335
Tssr91524 9 108347721 to 108347745 24 - TSS region transcription start site region 91524
Tssr87100 9 108347827 to 108347926 99 + TSS region transcription start site region 87100
Usp4 9 108347853 to 108392545 44692 + protein coding gene ubiquitin specific peptidase 4 (proto-oncogene)
Tssr87101 9 108347932 to 108347947 15 + TSS region transcription start site region 87101
Tssr87102 9 108347958 to 108347969 11 + TSS region transcription start site region 87102
Rps2-ps11 9 108358202 to 108359069 867 - pseudogene ribosomal protein S2, pseudogene 11
Tssr91525 9 108359092 to 108359099 7 - TSS region transcription start site region 91525
Tssr87103 9 108374365 to 108374367 2 + TSS region transcription start site region 87103
Gm37963 9 108389082 to 108390205 1123 + sense intronic lncRNA gene predicted gene, 37963
Tssr3011 9 108392793 to 108392812 19 + TSS region transcription start site region 3011
1700102P08Rik 9 108392805 to 108410934 18129 + protein coding gene RIKEN cDNA 1700102P08 gene
Tssr87104 9 108392820 to 108392843 23 + TSS region transcription start site region 87104
Cpgi22336 9 108392858 to 108393189 331 CpG island CpG island 22336
Tssr87105 9 108392895 to 108392902 7 + TSS region transcription start site region 87105
Tssr87106 9 108392908 to 108392918 10 + TSS region transcription start site region 87106
Tssr87107 9 108393134 to 108393143 9 + TSS region transcription start site region 87107
Tssr87108 9 108397928 to 108397934 6 + TSS region transcription start site region 87108
Ccdc36 9 108403611 to 108428484 24873 - protein coding gene coiled-coil domain containing 36
Lvic6 9 108413879 to 108414013 134 QTL liver iron content 6
D9Mit184 9 108413879 to 108414013 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 184
Splic3 9 108413879 to 108414013 134 QTL spleen iron content 3
Splic1 9 108413879 to 108414013 134 QTL spleen iron content 1
Gm25456 9 108430044 to 108430152 108 - snoRNA gene predicted gene, 25456
Cpgi22337 9 108431609 to 108431991 382 CpG island CpG island 22337
Tssr91526 9 108431810 to 108431845 35 - TSS region transcription start site region 91526
Tssr87109 9 108436463 to 108436470 7 + TSS region transcription start site region 87109
Tssr87110 9 108436474 to 108436504 30 + TSS region transcription start site region 87110
BC048562 9 108436482 to 108446083 9601 + protein coding gene cDNA sequence BC048562
Klhdc8b 9 108447636 to 108461581 13945 - protein coding gene kelch domain containing 8B
Cpgi22338 9 108452235 to 108452835 600 CpG island CpG island 22338