Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107693559-107952822

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema3f 9 107681500 to 107710475 28975 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Cpgi22308 9 107708913 to 107710831 1918 CpG island CpG island 22308
Tssr91467 9 107709643 to 107709681 38 - TSS region transcription start site region 91467
Tssr91468 9 107709896 to 107709994 98 - TSS region transcription start site region 91468
Tssr87025 9 107729518 to 107729527 9 + TSS region transcription start site region 87025
Gm34605 9 107729972 to 107736933 6961 + lncRNA gene predicted gene, 34605
Rbm5 9 107740495 to 107771009 30514 - protein coding gene RNA binding motif protein 5
Tssr91469 9 107757532 to 107757535 3 - TSS region transcription start site region 91469
Gm37850 9 107762808 to 107763587 779 + antisense lncRNA gene predicted gene, 37850
Tssr91470 9 107769622 to 107769626 4 - TSS region transcription start site region 91470
Cpgi22309 9 107770308 to 107771264 956 CpG island CpG island 22309
Tssr91471 9 107770951 to 107771007 56 - TSS region transcription start site region 91471
Rbm6 9 107773559 to 107872822 99263 - protein coding gene RNA binding motif protein 6
Tssr91472 9 107815960 to 107815965 5 - TSS region transcription start site region 91472
Tssr91473 9 107818064 to 107818080 16 - TSS region transcription start site region 91473
Gm37436 9 107818928 to 107820012 1084 - unclassified gene predicted gene, 37436
D9Ertd292e 9 107841883 to 107842127 244 DNA segment DNA segment, Chr 9, ERATO Doi 292, expressed
Cpgi22310 9 107872090 to 107873164 1074 CpG island CpG island 22310
Tssr91474 9 107872403 to 107872422 19 - TSS region transcription start site region 91474
4930506F14Rik 9 107872460 to 107873238 778 unclassified gene RIKEN cDNA 4930506F14 gene
Tssr91475 9 107872687 to 107872747 60 - TSS region transcription start site region 91475
Tssr91476 9 107872748 to 107872781 33 - TSS region transcription start site region 91476
Tssr91477 9 107872783 to 107872811 28 - TSS region transcription start site region 91477
Tssr91478 9 107872825 to 107872844 19 - TSS region transcription start site region 91478
Tssr87026 9 107872960 to 107872999 39 + TSS region transcription start site region 87026
Cpgi22311 9 107887901 to 107888448 547 CpG island CpG island 22311
Tssr87027 9 107888136 to 107888211 75 + TSS region transcription start site region 87027
Mon1a 9 107888151 to 107903139 14988 + protein coding gene MON1 homolog A, secretory traffciking associated
D9Dcr103 9 107891731 to 107891832 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 103
Cpgi22312 9 107901132 to 107901935 803 CpG island CpG island 22312
Gm23856 9 107905228 to 107905326 98 + snRNA gene predicted gene, 23856
Cpgi22313 9 107906800 to 107907427 627 CpG island CpG island 22313
Tssr87028 9 107906866 to 107906918 52 + TSS region transcription start site region 87028
Mst1r 9 107906873 to 107920383 13510 + protein coding gene macrophage stimulating 1 receptor (c-met-related tyrosine kinase)
Tssr87029 9 107912568 to 107912574 6 + TSS region transcription start site region 87029
Tssr87030 9 107914975 to 107915008 33 + TSS region transcription start site region 87030
Ltw3 9 107920383 to 86581363 -21339020 heritable phenotypic marker liver 20-30 thousand Mol. Wt. protein 3
Tssr87031 9 107928438 to 107928439 1 + TSS region transcription start site region 87031
Tssr87032 9 107928440 to 107928483 43 + TSS region transcription start site region 87032
Actl11 9 107928469 to 107932461 3992 + protein coding gene actin-like 11
Tssr87033 9 107928622 to 107928663 41 + TSS region transcription start site region 87033
Tssr87034 9 107928715 to 107928726 11 + TSS region transcription start site region 87034
Gm37974 9 107935077 to 107936394 1317 - antisense lncRNA gene predicted gene, 37974
Cpgi22314 9 107935522 to 107936723 1201 CpG island CpG island 22314
0710008F09Rik 9 107935673 to 107936144 471 unclassified gene RIKEN cDNA 0710008F09 gene
Tssr87035 9 107935876 to 107935938 62 + TSS region transcription start site region 87035
Camkv 9 107935920 to 107949691 13771 + protein coding gene CaM kinase-like vesicle-associated
Cpgi22315 9 107950703 to 107951374 671 CpG island CpG island 22315
Tssr87036 9 107950952 to 107950991 39 + TSS region transcription start site region 87036
Traip 9 107950963 to 107972268 21305 + protein coding gene TRAF-interacting protein