Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107682403-108062422

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema3f 9 107681500 to 107710475 28975 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Cpgi22306 9 107685335 to 107685596 261 CpG island CpG island 22306
Cpgi22307 9 107690499 to 107690650 151 CpG island CpG island 22307
Cpgi22308 9 107708913 to 107710831 1918 CpG island CpG island 22308
Tssr91467 9 107709643 to 107709681 38 - TSS region transcription start site region 91467
Tssr91468 9 107709896 to 107709994 98 - TSS region transcription start site region 91468
Tssr87025 9 107729518 to 107729527 9 + TSS region transcription start site region 87025
Gm34605 9 107729972 to 107736933 6961 + lncRNA gene predicted gene, 34605
Rbm5 9 107740495 to 107771009 30514 - protein coding gene RNA binding motif protein 5
Tssr91469 9 107757532 to 107757535 3 - TSS region transcription start site region 91469
Gm37850 9 107762808 to 107763587 779 + antisense lncRNA gene predicted gene, 37850
Tssr91470 9 107769622 to 107769626 4 - TSS region transcription start site region 91470
Cpgi22309 9 107770308 to 107771264 956 CpG island CpG island 22309
Tssr91471 9 107770951 to 107771007 56 - TSS region transcription start site region 91471
Rbm6 9 107773559 to 107872822 99263 - protein coding gene RNA binding motif protein 6
Tssr91472 9 107815960 to 107815965 5 - TSS region transcription start site region 91472
Tssr91473 9 107818064 to 107818080 16 - TSS region transcription start site region 91473
Gm37436 9 107818928 to 107820012 1084 - unclassified gene predicted gene, 37436
D9Ertd292e 9 107841883 to 107842127 244 DNA segment DNA segment, Chr 9, ERATO Doi 292, expressed
Cpgi22310 9 107872090 to 107873164 1074 CpG island CpG island 22310
Tssr91474 9 107872403 to 107872422 19 - TSS region transcription start site region 91474
4930506F14Rik 9 107872460 to 107873238 778 unclassified gene RIKEN cDNA 4930506F14 gene
Tssr91475 9 107872687 to 107872747 60 - TSS region transcription start site region 91475
Tssr91476 9 107872748 to 107872781 33 - TSS region transcription start site region 91476
Tssr91477 9 107872783 to 107872811 28 - TSS region transcription start site region 91477
Tssr91478 9 107872825 to 107872844 19 - TSS region transcription start site region 91478
Tssr87026 9 107872960 to 107872999 39 + TSS region transcription start site region 87026
Cpgi22311 9 107887901 to 107888448 547 CpG island CpG island 22311
Tssr87027 9 107888136 to 107888211 75 + TSS region transcription start site region 87027
Mon1a 9 107888151 to 107903139 14988 + protein coding gene MON1 homolog A, secretory traffciking associated
D9Dcr103 9 107891731 to 107891832 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 103
Cpgi22312 9 107901132 to 107901935 803 CpG island CpG island 22312
Gm23856 9 107905228 to 107905326 98 + snRNA gene predicted gene, 23856
Cpgi22313 9 107906800 to 107907427 627 CpG island CpG island 22313
Tssr87028 9 107906866 to 107906918 52 + TSS region transcription start site region 87028
Mst1r 9 107906873 to 107920383 13510 + protein coding gene macrophage stimulating 1 receptor (c-met-related tyrosine kinase)
Tssr87029 9 107912568 to 107912574 6 + TSS region transcription start site region 87029
Tssr87030 9 107914975 to 107915008 33 + TSS region transcription start site region 87030
Ltw3 9 107920383 to 86581363 -21339020 heritable phenotypic marker liver 20-30 thousand Mol. Wt. protein 3
Tssr87031 9 107928438 to 107928439 1 + TSS region transcription start site region 87031
Tssr87032 9 107928440 to 107928483 43 + TSS region transcription start site region 87032
Actl11 9 107928469 to 107932461 3992 + protein coding gene actin-like 11
Tssr87033 9 107928622 to 107928663 41 + TSS region transcription start site region 87033
Tssr87034 9 107928715 to 107928726 11 + TSS region transcription start site region 87034
Gm37974 9 107935077 to 107936394 1317 - antisense lncRNA gene predicted gene, 37974
Cpgi22314 9 107935522 to 107936723 1201 CpG island CpG island 22314
0710008F09Rik 9 107935673 to 107936144 471 unclassified gene RIKEN cDNA 0710008F09 gene
Tssr87035 9 107935876 to 107935938 62 + TSS region transcription start site region 87035
Camkv 9 107935920 to 107949691 13771 + protein coding gene CaM kinase-like vesicle-associated
Cpgi22315 9 107950703 to 107951374 671 CpG island CpG island 22315
Tssr87036 9 107950952 to 107950991 39 + TSS region transcription start site region 87036
Traip 9 107950963 to 107972268 21305 + protein coding gene TRAF-interacting protein
Tssr87037 9 107961504 to 107961507 3 + TSS region transcription start site region 87037
Tssr87038 9 107972100 to 107972114 14 + TSS region transcription start site region 87038
Tssr87039 9 107975496 to 107975510 14 + TSS region transcription start site region 87039
Tssr87040 9 107975529 to 107975601 72 + TSS region transcription start site region 87040
Uba7 9 107975567 to 107984056 8489 + protein coding gene ubiquitin-like modifier activating enzyme 7
Tssr87041 9 107975610 to 107975621 11 + TSS region transcription start site region 87041
Tssr87042 9 107975622 to 107975631 9 + TSS region transcription start site region 87042
Tssr87043 9 107975643 to 107975648 5 + TSS region transcription start site region 87043
Tssr87044 9 107975652 to 107975660 8 + TSS region transcription start site region 87044
Tssr87045 9 107976903 to 107976914 11 + TSS region transcription start site region 87045
Tssr87046 9 107982969 to 107982989 20 + TSS region transcription start site region 87046
Tssr87047 9 107982991 to 107983037 46 + TSS region transcription start site region 87047
Tssr87048 9 107983039 to 107983066 27 + TSS region transcription start site region 87048
Gm20661 9 107983058 to 107995007 11949 + protein coding gene predicted gene 20661
Inka1 9 107984223 to 107985879 1656 - protein coding gene inka box actin regulator 1
Cpgi22316 9 107985212 to 107986566 1354 CpG island CpG island 22316
Tssr91479 9 107985863 to 107985893 30 - TSS region transcription start site region 91479
Tssr91480 9 107985907 to 107985924 17 - TSS region transcription start site region 91480
Gm24944 9 107987369 to 107987496 127 + snoRNA gene predicted gene, 24944
4921523L03Rik 9 107991684 to 107995656 3972 - antisense lncRNA gene RIKEN cDNA 4921523L03 gene
Tssr87049 9 107992451 to 107992462 11 + TSS region transcription start site region 87049
Tssr87050 9 107992463 to 107992522 59 + TSS region transcription start site region 87050
Cdhr4 9 107992497 to 107999684 7187 + protein coding gene cadherin-related family member 4
Cpgi22317 9 107995645 to 107995925 280 CpG island CpG island 22317
Tssr87051 9 107995728 to 107995738 10 + TSS region transcription start site region 87051
Tssr87052 9 107995739 to 107995790 51 + TSS region transcription start site region 87052
Gm20662 9 107996349 to 108045270 48921 + protein coding gene predicted gene 20662
Tssr87053 9 107997987 to 107997999 12 + TSS region transcription start site region 87053
Tssr87054 9 107998006 to 107998026 20 + TSS region transcription start site region 87054
4930535L15Rik 9 107998116 to 108002404 4288 - antisense lncRNA gene RIKEN cDNA 4930535L15 gene
D9Dcr104 9 108000878 to 108000980 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 104
Cpgi22318 9 108002024 to 108003368 1344 CpG island CpG island 22318
Tssr87055 9 108002058 to 108002065 7 + TSS region transcription start site region 87055
Tssr91481 9 108002384 to 108002437 53 - TSS region transcription start site region 91481
Tssr87056 9 108002615 to 108002680 65 + TSS region transcription start site region 87056
Ip6k1 9 108002648 to 108048782 46134 + protein coding gene inositol hexaphosphate kinase 1
Gm38134 9 108010976 to 108016608 5632 - antisense lncRNA gene predicted gene, 38134
Tssr87057 9 108023926 to 108023952 26 + TSS region transcription start site region 87057
Tssr87058 9 108045389 to 108045402 13 + TSS region transcription start site region 87058
Cpgi22319 9 108048595 to 108049784 1189 CpG island CpG island 22319
Tssr87059 9 108049254 to 108049339 85 + TSS region transcription start site region 87059
Gmppb 9 108049267 to 108051936 2669 + protein coding gene GDP-mannose pyrophosphorylase B
Tssr87060 9 108049859 to 108049894 35 + TSS region transcription start site region 87060
Rnf123 9 108051672 to 108080309 28637 - protein coding gene ring finger protein 123
Gm20529 9 108051675 to 108058592 6917 + unclassified non-coding RNA gene predicted gene 20529
Tssr87061 9 108053154 to 108053165 11 + TSS region transcription start site region 87061
Amigo3 9 108053159 to 108055701 2542 + protein coding gene adhesion molecule with Ig like domain 3
Tssr91482 9 108057293 to 108057308 15 - TSS region transcription start site region 91482
D9Dcr105 9 108059509 to 108059604 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 105
Tssr91483 9 108061988 to 108062007 19 - TSS region transcription start site region 91483