Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107650649-108962202

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486 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc38a3 9 107651154 to 107668968 17814 - protein coding gene solute carrier family 38, member 3
Tssr91428 9 107651663 to 107651684 21 - TSS region transcription start site region 91428
Tssr91429 9 107651699 to 107651709 10 - TSS region transcription start site region 91429
Tssr87020 9 107652137 to 107652156 19 + TSS region transcription start site region 87020
Tssr91430 9 107652223 to 107652234 11 - TSS region transcription start site region 91430
Tssr91431 9 107655051 to 107655070 19 - TSS region transcription start site region 91431
Tssr91432 9 107655095 to 107655116 21 - TSS region transcription start site region 91432
Tssr91433 9 107655121 to 107655130 9 - TSS region transcription start site region 91433
Tssr91434 9 107655154 to 107655170 16 - TSS region transcription start site region 91434
Tssr91435 9 107655300 to 107655343 43 - TSS region transcription start site region 91435
Tssr91436 9 107655350 to 107655385 35 - TSS region transcription start site region 91436
Tssr91437 9 107655664 to 107655679 15 - TSS region transcription start site region 91437
Tssr87021 9 107655934 to 107655945 11 + TSS region transcription start site region 87021
Tssr91438 9 107656129 to 107656143 14 - TSS region transcription start site region 91438
Tssr91439 9 107656149 to 107656165 16 - TSS region transcription start site region 91439
Tssr91440 9 107656173 to 107656184 11 - TSS region transcription start site region 91440
Tssr91441 9 107656621 to 107656639 18 - TSS region transcription start site region 91441
Tssr91442 9 107656675 to 107656692 17 - TSS region transcription start site region 91442
Tssr91443 9 107657846 to 107657860 14 - TSS region transcription start site region 91443
Tssr91444 9 107657871 to 107657886 15 - TSS region transcription start site region 91444
Tssr91445 9 107657895 to 107657906 11 - TSS region transcription start site region 91445
Tssr91446 9 107658671 to 107658683 12 - TSS region transcription start site region 91446
Tssr91447 9 107658968 to 107658985 17 - TSS region transcription start site region 91447
Tssr91448 9 107662019 to 107662030 11 - TSS region transcription start site region 91448
Tssr91449 9 107664198 to 107664210 12 - TSS region transcription start site region 91449
Tssr91450 9 107664333 to 107664351 18 - TSS region transcription start site region 91450
Cpgi22304 9 107666507 to 107667499 992 CpG island CpG island 22304
Tssr91451 9 107667256 to 107667264 8 - TSS region transcription start site region 91451
Tssr91452 9 107667375 to 107667390 15 - TSS region transcription start site region 91452
Tssr91453 9 107668967 to 107668995 28 - TSS region transcription start site region 91453
Tssr91454 9 107668999 to 107669020 21 - TSS region transcription start site region 91454
D9Dcr102 9 107669556 to 107669647 91 DNA segment DNA segment, Chr 9, Derry C. Roopenian 102
Gnat1 9 107674474 to 107679592 5118 - protein coding gene guanine nucleotide binding protein, alpha transducing 1
Tssr87022 9 107674857 to 107674878 21 + TSS region transcription start site region 87022
Tssr91455 9 107674931 to 107674937 6 - TSS region transcription start site region 91455
Tssr91456 9 107675189 to 107675196 7 - TSS region transcription start site region 91456
Tssr91457 9 107675290 to 107675297 7 - TSS region transcription start site region 91457
Tssr91458 9 107675445 to 107675454 9 - TSS region transcription start site region 91458
Tssr91459 9 107675561 to 107675567 6 - TSS region transcription start site region 91459
Tssr91460 9 107675652 to 107675673 21 - TSS region transcription start site region 91460
Cpgi22305 9 107675757 to 107677507 1750 CpG island CpG island 22305
Tssr87023 9 107675780 to 107675794 14 + TSS region transcription start site region 87023
Tssr91461 9 107675992 to 107676000 8 - TSS region transcription start site region 91461
Tssr87024 9 107676042 to 107676051 9 + TSS region transcription start site region 87024
Tssr91462 9 107676073 to 107676078 5 - TSS region transcription start site region 91462
Tssr91463 9 107676402 to 107676413 11 - TSS region transcription start site region 91463
Tssr91464 9 107676432 to 107676448 16 - TSS region transcription start site region 91464
Tssr91465 9 107676596 to 107676615 19 - TSS region transcription start site region 91465
Tssr91466 9 107679624 to 107679640 16 - TSS region transcription start site region 91466
A930036K24Rik 9 107680082 to 107681281 1199 + unclassified gene RIKEN cDNA A930036K24 gene
Sema3f 9 107681500 to 107710475 28975 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Cpgi22306 9 107685335 to 107685596 261 CpG island CpG island 22306
Cpgi22307 9 107690499 to 107690650 151 CpG island CpG island 22307
Cpgi22308 9 107708913 to 107710831 1918 CpG island CpG island 22308
Tssr91467 9 107709643 to 107709681 38 - TSS region transcription start site region 91467
Tssr91468 9 107709896 to 107709994 98 - TSS region transcription start site region 91468
Tssr87025 9 107729518 to 107729527 9 + TSS region transcription start site region 87025
Gm34605 9 107729972 to 107736933 6961 + lncRNA gene predicted gene, 34605
Rbm5 9 107740495 to 107771009 30514 - protein coding gene RNA binding motif protein 5
Tssr91469 9 107757532 to 107757535 3 - TSS region transcription start site region 91469
Gm37850 9 107762808 to 107763587 779 + antisense lncRNA gene predicted gene, 37850
Tssr91470 9 107769622 to 107769626 4 - TSS region transcription start site region 91470
Cpgi22309 9 107770308 to 107771264 956 CpG island CpG island 22309
Tssr91471 9 107770951 to 107771007 56 - TSS region transcription start site region 91471
Rbm6 9 107773559 to 107872822 99263 - protein coding gene RNA binding motif protein 6
Tssr91472 9 107815960 to 107815965 5 - TSS region transcription start site region 91472
Tssr91473 9 107818064 to 107818080 16 - TSS region transcription start site region 91473
Gm37436 9 107818928 to 107820012 1084 - unclassified gene predicted gene, 37436
D9Ertd292e 9 107841883 to 107842127 244 DNA segment DNA segment, Chr 9, ERATO Doi 292, expressed
Cpgi22310 9 107872090 to 107873164 1074 CpG island CpG island 22310
Tssr91474 9 107872403 to 107872422 19 - TSS region transcription start site region 91474
4930506F14Rik 9 107872460 to 107873238 778 unclassified gene RIKEN cDNA 4930506F14 gene
Tssr91475 9 107872687 to 107872747 60 - TSS region transcription start site region 91475
Tssr91476 9 107872748 to 107872781 33 - TSS region transcription start site region 91476
Tssr91477 9 107872783 to 107872811 28 - TSS region transcription start site region 91477
Tssr91478 9 107872825 to 107872844 19 - TSS region transcription start site region 91478
Tssr87026 9 107872960 to 107872999 39 + TSS region transcription start site region 87026
Cpgi22311 9 107887901 to 107888448 547 CpG island CpG island 22311
Tssr87027 9 107888136 to 107888211 75 + TSS region transcription start site region 87027
Mon1a 9 107888151 to 107903139 14988 + protein coding gene MON1 homolog A, secretory traffciking associated
D9Dcr103 9 107891731 to 107891832 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 103
Cpgi22312 9 107901132 to 107901935 803 CpG island CpG island 22312
Gm23856 9 107905228 to 107905326 98 + snRNA gene predicted gene, 23856
Cpgi22313 9 107906800 to 107907427 627 CpG island CpG island 22313
Tssr87028 9 107906866 to 107906918 52 + TSS region transcription start site region 87028
Mst1r 9 107906873 to 107920383 13510 + protein coding gene macrophage stimulating 1 receptor (c-met-related tyrosine kinase)
Tssr87029 9 107912568 to 107912574 6 + TSS region transcription start site region 87029
Tssr87030 9 107914975 to 107915008 33 + TSS region transcription start site region 87030
Ltw3 9 107920383 to 86581363 -21339020 heritable phenotypic marker liver 20-30 thousand Mol. Wt. protein 3
Tssr87031 9 107928438 to 107928439 1 + TSS region transcription start site region 87031
Tssr87032 9 107928440 to 107928483 43 + TSS region transcription start site region 87032
Actl11 9 107928469 to 107932461 3992 + protein coding gene actin-like 11
Tssr87033 9 107928622 to 107928663 41 + TSS region transcription start site region 87033
Tssr87034 9 107928715 to 107928726 11 + TSS region transcription start site region 87034
Gm37974 9 107935077 to 107936394 1317 - antisense lncRNA gene predicted gene, 37974
Cpgi22314 9 107935522 to 107936723 1201 CpG island CpG island 22314
0710008F09Rik 9 107935673 to 107936144 471 unclassified gene RIKEN cDNA 0710008F09 gene
Tssr87035 9 107935876 to 107935938 62 + TSS region transcription start site region 87035
Camkv 9 107935920 to 107949691 13771 + protein coding gene CaM kinase-like vesicle-associated
Cpgi22315 9 107950703 to 107951374 671 CpG island CpG island 22315
Tssr87036 9 107950952 to 107950991 39 + TSS region transcription start site region 87036
Traip 9 107950963 to 107972268 21305 + protein coding gene TRAF-interacting protein
Tssr87037 9 107961504 to 107961507 3 + TSS region transcription start site region 87037
Tssr87038 9 107972100 to 107972114 14 + TSS region transcription start site region 87038
Tssr87039 9 107975496 to 107975510 14 + TSS region transcription start site region 87039
Tssr87040 9 107975529 to 107975601 72 + TSS region transcription start site region 87040
Uba7 9 107975567 to 107984056 8489 + protein coding gene ubiquitin-like modifier activating enzyme 7
Tssr87041 9 107975610 to 107975621 11 + TSS region transcription start site region 87041
Tssr87042 9 107975622 to 107975631 9 + TSS region transcription start site region 87042
Tssr87043 9 107975643 to 107975648 5 + TSS region transcription start site region 87043
Tssr87044 9 107975652 to 107975660 8 + TSS region transcription start site region 87044
Tssr87045 9 107976903 to 107976914 11 + TSS region transcription start site region 87045
Tssr87046 9 107982969 to 107982989 20 + TSS region transcription start site region 87046
Tssr87047 9 107982991 to 107983037 46 + TSS region transcription start site region 87047
Tssr87048 9 107983039 to 107983066 27 + TSS region transcription start site region 87048
Gm20661 9 107983058 to 107995007 11949 + protein coding gene predicted gene 20661
Inka1 9 107984223 to 107985879 1656 - protein coding gene inka box actin regulator 1
Cpgi22316 9 107985212 to 107986566 1354 CpG island CpG island 22316
Tssr91479 9 107985863 to 107985893 30 - TSS region transcription start site region 91479
Tssr91480 9 107985907 to 107985924 17 - TSS region transcription start site region 91480
Gm24944 9 107987369 to 107987496 127 + snoRNA gene predicted gene, 24944
4921523L03Rik 9 107991684 to 107995656 3972 - antisense lncRNA gene RIKEN cDNA 4921523L03 gene
Tssr87049 9 107992451 to 107992462 11 + TSS region transcription start site region 87049
Tssr87050 9 107992463 to 107992522 59 + TSS region transcription start site region 87050
Cdhr4 9 107992497 to 107999684 7187 + protein coding gene cadherin-related family member 4
Cpgi22317 9 107995645 to 107995925 280 CpG island CpG island 22317
Tssr87051 9 107995728 to 107995738 10 + TSS region transcription start site region 87051
Tssr87052 9 107995739 to 107995790 51 + TSS region transcription start site region 87052
Gm20662 9 107996349 to 108045270 48921 + protein coding gene predicted gene 20662
Tssr87053 9 107997987 to 107997999 12 + TSS region transcription start site region 87053
Tssr87054 9 107998006 to 107998026 20 + TSS region transcription start site region 87054
4930535L15Rik 9 107998116 to 108002404 4288 - antisense lncRNA gene RIKEN cDNA 4930535L15 gene
D9Dcr104 9 108000878 to 108000980 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 104
Cpgi22318 9 108002024 to 108003368 1344 CpG island CpG island 22318
Tssr87055 9 108002058 to 108002065 7 + TSS region transcription start site region 87055
Tssr91481 9 108002384 to 108002437 53 - TSS region transcription start site region 91481
Tssr87056 9 108002615 to 108002680 65 + TSS region transcription start site region 87056
Ip6k1 9 108002648 to 108048782 46134 + protein coding gene inositol hexaphosphate kinase 1
Gm38134 9 108010976 to 108016608 5632 - antisense lncRNA gene predicted gene, 38134
Tssr87057 9 108023926 to 108023952 26 + TSS region transcription start site region 87057
Tssr87058 9 108045389 to 108045402 13 + TSS region transcription start site region 87058
Cpgi22319 9 108048595 to 108049784 1189 CpG island CpG island 22319
Tssr87059 9 108049254 to 108049339 85 + TSS region transcription start site region 87059
Gmppb 9 108049267 to 108051936 2669 + protein coding gene GDP-mannose pyrophosphorylase B
Tssr87060 9 108049859 to 108049894 35 + TSS region transcription start site region 87060
Rnf123 9 108051672 to 108080309 28637 - protein coding gene ring finger protein 123
Gm20529 9 108051675 to 108058592 6917 + unclassified non-coding RNA gene predicted gene 20529
Tssr87061 9 108053154 to 108053165 11 + TSS region transcription start site region 87061
Amigo3 9 108053159 to 108055701 2542 + protein coding gene adhesion molecule with Ig like domain 3
Tssr91482 9 108057293 to 108057308 15 - TSS region transcription start site region 91482
D9Dcr105 9 108059509 to 108059604 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 105
Tssr91483 9 108061988 to 108062007 19 - TSS region transcription start site region 91483
Tssr91484 9 108072062 to 108072066 4 - TSS region transcription start site region 91484
D9Dcr106 9 108078300 to 108078401 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 106
Cpgi22320 9 108078764 to 108079722 958 CpG island CpG island 22320
Tssr91485 9 108079255 to 108079273 18 - TSS region transcription start site region 91485
Tssr91486 9 108079279 to 108079341 62 - TSS region transcription start site region 91486
Tssr91487 9 108079699 to 108079710 11 - TSS region transcription start site region 91487
Tssr91488 9 108079714 to 108079765 51 - TSS region transcription start site region 91488
Tssr91489 9 108080274 to 108080306 32 - TSS region transcription start site region 91489
Tssr87062 9 108080423 to 108080430 7 + TSS region transcription start site region 87062
Mst1 9 108080436 to 108085003 4567 + protein coding gene macrophage stimulating 1 (hepatocyte growth factor-like)
Tssr87063 9 108080446 to 108080462 16 + TSS region transcription start site region 87063
Tssr87064 9 108080467 to 108080478 11 + TSS region transcription start site region 87064
Mir7088 9 108081498 to 108081583 85 + miRNA gene microRNA 7088
Cpgi22321 9 108082017 to 108083097 1080 CpG island CpG island 22321
Tssr91490 9 108083330 to 108083370 40 - TSS region transcription start site region 91490
Apeh 9 108085414 to 108094554 9140 - protein coding gene acylpeptide hydrolase
Cpgi22322 9 108094080 to 108095248 1168 CpG island CpG island 22322
Tssr91491 9 108094459 to 108094487 28 - TSS region transcription start site region 91491
Tssr91492 9 108094527 to 108094542 15 - TSS region transcription start site region 91492
Tssr87065 9 108094657 to 108094696 39 + TSS region transcription start site region 87065
Gm46132 9 108094933 to 108096273 1340 + lncRNA gene predicted gene, 46132
Tssr87066 9 108095192 to 108095213 21 + TSS region transcription start site region 87066
Tssr87067 9 108095237 to 108095251 14 + TSS region transcription start site region 87067
Bsn 9 108096022 to 108190384 94362 - protein coding gene bassoon
Tssr91493 9 108101930 to 108101934 4 - TSS region transcription start site region 91493
Gm47303 9 108103129 to 108103246 117 - miRNA gene predicted gene, 47303
Tssr91494 9 108104861 to 108104872 11 - TSS region transcription start site region 91494
Tssr91495 9 108104874 to 108104902 28 - TSS region transcription start site region 91495
F630040L22Rik 9 108104964 to 108118342 13378 unclassified gene RIKEN cDNA F630040L22 gene
Cpgi22323 9 108105224 to 108105686 462 CpG island CpG island 22323
Cpgi22324 9 108106103 to 108106819 716 CpG island CpG island 22324
Cpgi22325 9 108110452 to 108111491 1039 CpG island CpG island 22325
Tssr91496 9 108110776 to 108110790 14 - TSS region transcription start site region 91496
Tssr91497 9 108110816 to 108110868 52 - TSS region transcription start site region 91497
Tssr87068 9 108110970 to 108110989 19 + TSS region transcription start site region 87068
Tssr91498 9 108111279 to 108111293 14 - TSS region transcription start site region 91498
Cpgi22326 9 108114857 to 108115710 853 CpG island CpG island 22326
Tssr91499 9 108126542 to 108126559 17 - TSS region transcription start site region 91499
4930447F24Rik 9 108133718 to 108138567 4849 + lncRNA gene RIKEN cDNA 4930447F24 gene
Tssr91500 9 108135396 to 108135409 13 - TSS region transcription start site region 91500
Cpgi22327 9 108137627 to 108137847 220 CpG island CpG island 22327
Tssr91501 9 108139365 to 108139377 12 - TSS region transcription start site region 91501
Tssr91502 9 108139452 to 108139455 3 - TSS region transcription start site region 91502
Tssr87069 9 108145977 to 108145996 19 + TSS region transcription start site region 87069
D9Dcr107 9 108146410 to 108146504 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 107
D9Dcr108 9 108156038 to 108156145 107 DNA segment DNA segment, Chr 9, Derry C. Roopenian 108
Cpgi22328 9 108160245 to 108160412 167 CpG island CpG island 22328
Gm37201 9 108160279 to 108160801 522 + pseudogene predicted gene, 37201